Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1410 and GFF1411 are separated by 26 nucleotides GFF1411 and GFF1412 are separated by 37 nucleotides GFF1412 and GFF1413 are separated by 50 nucleotides GFF1413 and GFF1414 are separated by 26 nucleotides
GFF1410 - Flagellar basal-body rod protein FlgG, at 272,194 to 272,976
GFF1410
GFF1411 - Flagellar basal-body rod protein FlgF, at 273,003 to 273,740
GFF1411
GFF1412 - Flagellar hook protein FlgE, at 273,778 to 274,992
GFF1412
GFF1413 - Flagellar basal-body rod modification protein FlgD, at 275,043 to 275,705
GFF1413
GFF1414 - Flagellar basal-body rod protein FlgC, at 275,732 to 276,136
GFF1414
Position (kb) 273
274
275 Strain fitness (log2 ratio) -2
-1
0
1 at 272.840 kb on + strand, within GFF1410 at 272.840 kb on + strand, within GFF1410 at 272.841 kb on - strand, within GFF1410 at 273.445 kb on + strand, within GFF1411 at 273.445 kb on + strand, within GFF1411 at 273.445 kb on + strand, within GFF1411 at 273.482 kb on - strand, within GFF1411 at 273.692 kb on - strand at 273.724 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 274.079 kb on + strand, within GFF1412 at 274.079 kb on + strand, within GFF1412 at 274.079 kb on + strand, within GFF1412 at 274.080 kb on - strand, within GFF1412 at 274.181 kb on + strand, within GFF1412 at 274.181 kb on + strand, within GFF1412 at 274.352 kb on + strand, within GFF1412 at 274.424 kb on + strand, within GFF1412 at 274.445 kb on + strand, within GFF1412 at 274.865 kb on + strand, within GFF1412 at 274.866 kb on - strand, within GFF1412 at 275.069 kb on - strand at 275.101 kb on + strand at 275.102 kb on - strand at 275.102 kb on - strand at 275.102 kb on - strand at 275.102 kb on - strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.803 kb on - strand, within GFF1414
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 272,840 + GFF1410 0.83 -0.9 272,840 + GFF1410 0.83 +0.5 272,841 - GFF1410 0.83 +0.3 273,445 + GFF1411 0.60 -0.0 273,445 + GFF1411 0.60 -1.0 273,445 + GFF1411 0.60 -0.3 273,482 - GFF1411 0.65 +0.9 273,692 - -0.0 273,724 + -1.3 273,845 + +0.5 273,845 + -0.2 273,845 + -0.5 274,079 + GFF1412 0.25 -0.4 274,079 + GFF1412 0.25 +0.8 274,079 + GFF1412 0.25 -0.1 274,080 - GFF1412 0.25 +0.0 274,181 + GFF1412 0.33 -0.9 274,181 + GFF1412 0.33 +0.1 274,352 + GFF1412 0.47 -0.2 274,424 + GFF1412 0.53 +0.0 274,445 + GFF1412 0.55 +0.7 274,865 + GFF1412 0.89 -0.0 274,866 - GFF1412 0.90 -0.4 275,069 - +0.3 275,101 + +1.2 275,102 - +0.2 275,102 - -0.1 275,102 - -0.4 275,102 - -0.1 275,701 + -0.2 275,701 + -0.2 275,701 + +0.1 275,701 + -0.1 275,701 + -1.8 275,701 + -0.1 275,701 + +1.0 275,702 - -0.3 275,702 - +0.2 275,702 - -0.1 275,702 - +0.1 275,702 - +0.2 275,803 - GFF1414 0.18 -0.7
Or see this region's nucleotide sequence