Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1327 and GFF1328 are separated by 190 nucleotides GFF1328 and GFF1329 are separated by 52 nucleotides GFF1329 and GFF1330 are separated by 74 nucleotides
GFF1327 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 175,668 to 180,446
GFF1327
GFF1328 - Transposase and inactivated derivatives, at 180,637 to 181,338
GFF1328
GFF1329 - FIG00761799: membrane protein, at 181,391 to 182,518
GFF1329
GFF1330 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), at 182,593 to 183,762
GFF1330
Position (kb) 181
182
183 Strain fitness (log2 ratio) -1
0
1
2 at 180.400 kb on + strand at 180.400 kb on + strand at 180.401 kb on - strand at 180.401 kb on - strand at 180.474 kb on + strand at 180.474 kb on + strand at 180.474 kb on + strand at 180.475 kb on - strand at 180.499 kb on + strand at 180.500 kb on - strand at 180.500 kb on - strand at 180.500 kb on - strand at 180.500 kb on - strand at 180.500 kb on - strand at 180.500 kb on - strand at 180.818 kb on + strand, within GFF1328 at 180.818 kb on + strand, within GFF1328 at 180.905 kb on + strand, within GFF1328 at 180.905 kb on + strand, within GFF1328 at 180.905 kb on + strand, within GFF1328 at 180.906 kb on - strand, within GFF1328 at 180.906 kb on - strand, within GFF1328 at 180.980 kb on + strand, within GFF1328 at 180.980 kb on + strand, within GFF1328 at 180.980 kb on + strand, within GFF1328 at 180.980 kb on + strand, within GFF1328 at 180.980 kb on + strand, within GFF1328 at 180.980 kb on + strand, within GFF1328 at 180.980 kb on + strand, within GFF1328 at 180.980 kb on + strand, within GFF1328 at 180.981 kb on - strand, within GFF1328 at 180.981 kb on - strand, within GFF1328 at 180.981 kb on - strand, within GFF1328 at 180.981 kb on - strand, within GFF1328 at 181.001 kb on + strand, within GFF1328 at 181.001 kb on + strand, within GFF1328 at 181.002 kb on - strand, within GFF1328 at 181.031 kb on + strand, within GFF1328 at 181.032 kb on - strand, within GFF1328 at 181.065 kb on - strand, within GFF1328 at 181.079 kb on + strand, within GFF1328 at 181.079 kb on + strand, within GFF1328 at 181.080 kb on - strand, within GFF1328 at 181.080 kb on - strand, within GFF1328 at 181.089 kb on - strand, within GFF1328 at 181.178 kb on + strand, within GFF1328 at 181.178 kb on + strand, within GFF1328 at 181.178 kb on + strand, within GFF1328 at 181.178 kb on + strand, within GFF1328 at 181.178 kb on + strand, within GFF1328 at 181.179 kb on - strand, within GFF1328 at 181.179 kb on - strand, within GFF1328 at 181.304 kb on + strand at 181.304 kb on + strand at 181.305 kb on - strand at 181.305 kb on - strand at 181.393 kb on - strand at 181.393 kb on - strand at 181.671 kb on + strand, within GFF1329 at 181.671 kb on + strand, within GFF1329 at 181.671 kb on + strand, within GFF1329 at 181.671 kb on + strand, within GFF1329 at 181.671 kb on + strand, within GFF1329 at 181.672 kb on - strand, within GFF1329 at 181.734 kb on + strand, within GFF1329 at 181.734 kb on + strand, within GFF1329 at 181.734 kb on + strand, within GFF1329 at 181.735 kb on - strand, within GFF1329 at 181.872 kb on + strand, within GFF1329 at 181.873 kb on + strand, within GFF1329 at 181.873 kb on - strand, within GFF1329 at 181.873 kb on - strand, within GFF1329 at 181.873 kb on - strand, within GFF1329 at 181.873 kb on - strand, within GFF1329 at 181.918 kb on - strand, within GFF1329 at 182.152 kb on + strand, within GFF1329 at 182.153 kb on - strand, within GFF1329 at 182.166 kb on + strand, within GFF1329 at 182.166 kb on + strand, within GFF1329 at 182.166 kb on + strand, within GFF1329 at 182.166 kb on + strand, within GFF1329 at 182.166 kb on + strand, within GFF1329 at 182.166 kb on + strand, within GFF1329 at 182.166 kb on + strand, within GFF1329 at 182.166 kb on + strand, within GFF1329 at 182.167 kb on - strand, within GFF1329 at 182.167 kb on - strand, within GFF1329 at 182.167 kb on - strand, within GFF1329 at 182.167 kb on - strand, within GFF1329 at 182.167 kb on - strand, within GFF1329 at 182.167 kb on - strand, within GFF1329 at 182.167 kb on - strand, within GFF1329 at 182.167 kb on - strand, within GFF1329 at 182.533 kb on + strand at 182.616 kb on - strand at 182.666 kb on + strand at 182.666 kb on + strand at 182.667 kb on - strand at 182.738 kb on + strand, within GFF1330 at 182.738 kb on + strand, within GFF1330 at 182.738 kb on + strand, within GFF1330 at 182.738 kb on + strand, within GFF1330 at 182.739 kb on - strand, within GFF1330 at 182.957 kb on + strand, within GFF1330 at 182.957 kb on + strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 183.047 kb on + strand, within GFF1330 at 183.131 kb on + strand, within GFF1330 at 183.132 kb on - strand, within GFF1330 at 183.132 kb on - strand, within GFF1330
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 180,400 + +0.7 180,400 + +0.5 180,401 - +0.2 180,401 - +1.0 180,474 + -0.1 180,474 + -0.0 180,474 + +0.6 180,475 - -0.3 180,499 + -0.3 180,500 - -0.4 180,500 - -0.1 180,500 - -0.2 180,500 - -0.3 180,500 - -0.0 180,500 - -0.4 180,818 + GFF1328 0.26 +0.3 180,818 + GFF1328 0.26 -0.3 180,905 + GFF1328 0.38 -0.1 180,905 + GFF1328 0.38 -0.9 180,905 + GFF1328 0.38 -0.4 180,906 - GFF1328 0.38 -0.3 180,906 - GFF1328 0.38 -0.6 180,980 + GFF1328 0.49 +0.2 180,980 + GFF1328 0.49 +0.7 180,980 + GFF1328 0.49 +1.2 180,980 + GFF1328 0.49 -1.0 180,980 + GFF1328 0.49 +0.7 180,980 + GFF1328 0.49 +0.1 180,980 + GFF1328 0.49 -0.0 180,980 + GFF1328 0.49 +0.5 180,981 - GFF1328 0.49 +0.0 180,981 - GFF1328 0.49 -0.5 180,981 - GFF1328 0.49 +0.5 180,981 - GFF1328 0.49 +0.6 181,001 + GFF1328 0.52 -0.7 181,001 + GFF1328 0.52 +0.1 181,002 - GFF1328 0.52 -0.1 181,031 + GFF1328 0.56 -0.6 181,032 - GFF1328 0.56 +0.2 181,065 - GFF1328 0.61 +0.7 181,079 + GFF1328 0.63 +0.0 181,079 + GFF1328 0.63 +0.2 181,080 - GFF1328 0.63 -0.6 181,080 - GFF1328 0.63 -0.4 181,089 - GFF1328 0.64 -0.4 181,178 + GFF1328 0.77 +0.2 181,178 + GFF1328 0.77 +0.1 181,178 + GFF1328 0.77 +0.7 181,178 + GFF1328 0.77 -1.3 181,178 + GFF1328 0.77 +0.3 181,179 - GFF1328 0.77 -0.7 181,179 - GFF1328 0.77 -0.1 181,304 + +0.4 181,304 + -0.1 181,305 - +1.3 181,305 - +0.5 181,393 - +0.3 181,393 - -0.2 181,671 + GFF1329 0.25 -0.9 181,671 + GFF1329 0.25 -0.3 181,671 + GFF1329 0.25 -0.2 181,671 + GFF1329 0.25 +0.1 181,671 + GFF1329 0.25 -0.2 181,672 - GFF1329 0.25 -1.3 181,734 + GFF1329 0.30 -0.3 181,734 + GFF1329 0.30 -0.5 181,734 + GFF1329 0.30 -0.4 181,735 - GFF1329 0.30 -0.7 181,872 + GFF1329 0.43 -0.9 181,873 + GFF1329 0.43 -0.5 181,873 - GFF1329 0.43 -0.0 181,873 - GFF1329 0.43 +0.4 181,873 - GFF1329 0.43 -0.9 181,873 - GFF1329 0.43 -0.3 181,918 - GFF1329 0.47 -0.1 182,152 + GFF1329 0.67 -0.5 182,153 - GFF1329 0.68 -0.8 182,166 + GFF1329 0.69 -0.4 182,166 + GFF1329 0.69 -0.5 182,166 + GFF1329 0.69 -0.8 182,166 + GFF1329 0.69 -0.4 182,166 + GFF1329 0.69 -1.1 182,166 + GFF1329 0.69 -0.8 182,166 + GFF1329 0.69 -0.3 182,166 + GFF1329 0.69 -0.5 182,167 - GFF1329 0.69 +0.2 182,167 - GFF1329 0.69 -1.3 182,167 - GFF1329 0.69 -0.3 182,167 - GFF1329 0.69 -0.6 182,167 - GFF1329 0.69 -0.2 182,167 - GFF1329 0.69 -0.1 182,167 - GFF1329 0.69 -0.1 182,167 - GFF1329 0.69 +0.7 182,533 + -0.8 182,616 - +0.7 182,666 + +0.1 182,666 + -0.8 182,667 - -0.4 182,738 + GFF1330 0.12 +1.0 182,738 + GFF1330 0.12 +1.9 182,738 + GFF1330 0.12 +0.7 182,738 + GFF1330 0.12 +0.8 182,739 - GFF1330 0.12 +0.3 182,957 + GFF1330 0.31 -0.2 182,957 + GFF1330 0.31 +0.0 182,958 - GFF1330 0.31 +0.1 182,958 - GFF1330 0.31 +0.2 182,958 - GFF1330 0.31 -0.3 182,958 - GFF1330 0.31 -1.0 182,958 - GFF1330 0.31 -0.3 182,958 - GFF1330 0.31 -0.1 182,958 - GFF1330 0.31 +0.3 182,958 - GFF1330 0.31 -0.9 183,047 + GFF1330 0.39 +0.2 183,131 + GFF1330 0.46 -0.3 183,132 - GFF1330 0.46 +0.2 183,132 - GFF1330 0.46 -0.2
Or see this region's nucleotide sequence