Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1175 and GFF1176 are separated by 42 nucleotides GFF1176 and GFF1177 are separated by 3 nucleotides GFF1177 and GFF1178 are separated by 10 nucleotides GFF1178 and GFF1179 are separated by 34 nucleotides GFF1179 and GFF1180 are separated by 116 nucleotides
GFF1175 - ortholog of Bordetella pertussis (BX470248) BP2475, at 33,222 to 33,866
GFF1175
GFF1176 - hypothetical protein, at 33,909 to 34,301
GFF1176
GFF1177 - Hemoglobin-like protein HbO, at 34,305 to 34,721
GFF1177
GFF1178 - ABC transporter, permease protein, putative, at 34,732 to 37,275
GFF1178
GFF1179 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 37,310 to 37,942
GFF1179
GFF1180 - membrane protein, at 38,059 to 38,643
GFF1180
Position (kb) 34
35
36
37
38 Strain fitness (log2 ratio) -1
0
1
2 at 33.877 kb on + strand at 33.878 kb on - strand at 33.878 kb on - strand at 33.878 kb on - strand at 33.908 kb on + strand at 33.908 kb on + strand at 33.908 kb on + strand at 33.908 kb on + strand at 33.909 kb on - strand at 33.909 kb on - strand at 33.975 kb on + strand, within GFF1176 at 33.976 kb on - strand, within GFF1176 at 34.032 kb on + strand, within GFF1176 at 34.032 kb on + strand, within GFF1176 at 34.033 kb on - strand, within GFF1176 at 34.033 kb on - strand, within GFF1176 at 34.174 kb on - strand, within GFF1176 at 34.174 kb on - strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.261 kb on - strand, within GFF1176 at 34.498 kb on + strand, within GFF1177 at 34.499 kb on - strand, within GFF1177 at 34.621 kb on + strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 35.252 kb on + strand, within GFF1178 at 35.252 kb on + strand, within GFF1178 at 35.253 kb on - strand, within GFF1178 at 35.253 kb on - strand, within GFF1178 at 35.253 kb on - strand, within GFF1178 at 35.618 kb on + strand, within GFF1178 at 35.618 kb on + strand, within GFF1178 at 36.254 kb on + strand, within GFF1178 at 36.255 kb on - strand, within GFF1178 at 36.255 kb on - strand, within GFF1178 at 36.315 kb on - strand, within GFF1178 at 36.615 kb on - strand, within GFF1178 at 37.363 kb on - strand at 37.401 kb on + strand, within GFF1179 at 37.402 kb on - strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.597 kb on - strand, within GFF1179 at 37.597 kb on - strand, within GFF1179 at 37.599 kb on + strand, within GFF1179 at 37.599 kb on + strand, within GFF1179 at 37.599 kb on + strand, within GFF1179 at 37.600 kb on - strand, within GFF1179 at 37.600 kb on - strand, within GFF1179 at 37.600 kb on - strand, within GFF1179 at 37.632 kb on + strand, within GFF1179 at 37.816 kb on - strand, within GFF1179 at 38.012 kb on + strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.046 kb on + strand at 38.046 kb on + strand at 38.046 kb on + strand at 38.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 33,877 + +1.1 33,878 - -0.4 33,878 - +0.6 33,878 - +0.8 33,908 + -0.2 33,908 + +0.5 33,908 + +0.2 33,908 + +0.2 33,909 - +0.7 33,909 - +0.5 33,975 + GFF1176 0.17 -0.2 33,976 - GFF1176 0.17 +2.1 34,032 + GFF1176 0.31 -0.4 34,032 + GFF1176 0.31 -0.6 34,033 - GFF1176 0.32 +0.1 34,033 - GFF1176 0.32 +1.1 34,174 - GFF1176 0.67 +0.4 34,174 - GFF1176 0.67 +0.1 34,260 + GFF1176 0.89 +0.0 34,260 + GFF1176 0.89 -0.1 34,260 + GFF1176 0.89 -1.1 34,260 + GFF1176 0.89 +0.8 34,260 + GFF1176 0.89 -0.5 34,261 - GFF1176 0.90 -0.1 34,498 + GFF1177 0.46 -0.7 34,499 - GFF1177 0.47 -0.3 34,621 + GFF1177 0.76 +0.5 34,622 - GFF1177 0.76 +0.2 34,622 - GFF1177 0.76 +0.1 34,622 - GFF1177 0.76 -0.0 34,622 - GFF1177 0.76 -0.6 34,622 - GFF1177 0.76 -0.1 34,622 - GFF1177 0.76 -0.1 35,252 + GFF1178 0.20 +0.2 35,252 + GFF1178 0.20 -0.6 35,253 - GFF1178 0.20 -1.0 35,253 - GFF1178 0.20 -0.2 35,253 - GFF1178 0.20 +0.1 35,618 + GFF1178 0.35 -0.1 35,618 + GFF1178 0.35 -0.3 36,254 + GFF1178 0.60 -0.1 36,255 - GFF1178 0.60 -0.3 36,255 - GFF1178 0.60 -0.9 36,315 - GFF1178 0.62 +0.1 36,615 - GFF1178 0.74 -0.2 37,363 - +1.6 37,401 + GFF1179 0.14 -0.2 37,402 - GFF1179 0.15 +1.3 37,596 + GFF1179 0.45 +1.1 37,596 + GFF1179 0.45 +0.1 37,596 + GFF1179 0.45 -1.0 37,596 + GFF1179 0.45 +0.5 37,596 + GFF1179 0.45 +0.1 37,597 - GFF1179 0.45 +0.2 37,597 - GFF1179 0.45 +1.6 37,599 + GFF1179 0.46 +0.5 37,599 + GFF1179 0.46 -0.2 37,599 + GFF1179 0.46 +0.5 37,600 - GFF1179 0.46 +0.9 37,600 - GFF1179 0.46 -0.1 37,600 - GFF1179 0.46 -0.0 37,632 + GFF1179 0.51 +0.0 37,816 - GFF1179 0.80 -0.5 38,012 + -0.1 38,013 - -0.5 38,013 - -0.1 38,013 - +1.8 38,013 - -0.2 38,046 + +0.3 38,046 + -0.4 38,046 + +0.2 38,047 - -0.3
Or see this region's nucleotide sequence