Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1023 and GFF1024 are separated by 75 nucleotides GFF1024 and GFF1025 are separated by 14 nucleotides GFF1025 and GFF1026 are separated by 52 nucleotides
GFF1023 - TRAP transporter solute receptor, unknown substrate 3, at 761,265 to 762,317
GFF1023
GFF1024 - putative aldehyde dehydrogenase, at 762,393 to 763,841
GFF1024
GFF1025 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 763,856 to 764,611
GFF1025
GFF1026 - Ferredoxin reductase, at 764,664 to 765,839
GFF1026
Position (kb) 762
763
764 Strain fitness (log2 ratio) -1
0
1 at 761.424 kb on + strand, within GFF1023 at 761.424 kb on + strand, within GFF1023 at 761.424 kb on + strand, within GFF1023 at 761.425 kb on - strand, within GFF1023 at 761.558 kb on + strand, within GFF1023 at 761.559 kb on - strand, within GFF1023 at 761.559 kb on - strand, within GFF1023 at 761.560 kb on + strand, within GFF1023 at 761.561 kb on - strand, within GFF1023 at 761.600 kb on - strand, within GFF1023 at 761.600 kb on - strand, within GFF1023 at 761.778 kb on - strand, within GFF1023 at 761.778 kb on - strand, within GFF1023 at 761.932 kb on + strand, within GFF1023 at 762.040 kb on + strand, within GFF1023 at 762.045 kb on - strand, within GFF1023 at 762.128 kb on + strand, within GFF1023 at 762.128 kb on + strand, within GFF1023 at 762.128 kb on + strand, within GFF1023 at 762.128 kb on + strand, within GFF1023 at 762.129 kb on - strand, within GFF1023 at 762.212 kb on + strand at 762.212 kb on + strand at 762.213 kb on - strand at 762.214 kb on - strand at 762.381 kb on + strand at 762.385 kb on - strand at 762.640 kb on - strand, within GFF1024 at 762.745 kb on + strand, within GFF1024 at 762.911 kb on - strand, within GFF1024 at 762.911 kb on - strand, within GFF1024 at 762.943 kb on + strand, within GFF1024 at 762.943 kb on + strand, within GFF1024 at 762.943 kb on + strand, within GFF1024 at 762.944 kb on - strand, within GFF1024 at 762.944 kb on - strand, within GFF1024 at 762.944 kb on - strand, within GFF1024 at 763.161 kb on + strand, within GFF1024 at 763.161 kb on + strand, within GFF1024 at 763.161 kb on + strand, within GFF1024 at 763.825 kb on + strand at 763.865 kb on + strand at 763.925 kb on + strand at 764.106 kb on - strand, within GFF1025 at 764.148 kb on + strand, within GFF1025 at 764.148 kb on + strand, within GFF1025 at 764.148 kb on + strand, within GFF1025 at 764.148 kb on + strand, within GFF1025 at 764.676 kb on + strand at 764.677 kb on - strand at 764.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 761,424 + GFF1023 0.15 -0.1 761,424 + GFF1023 0.15 +0.8 761,424 + GFF1023 0.15 +1.3 761,425 - GFF1023 0.15 -0.2 761,558 + GFF1023 0.28 -0.1 761,559 - GFF1023 0.28 -0.3 761,559 - GFF1023 0.28 +0.2 761,560 + GFF1023 0.28 -0.4 761,561 - GFF1023 0.28 +0.6 761,600 - GFF1023 0.32 +0.2 761,600 - GFF1023 0.32 -0.1 761,778 - GFF1023 0.49 -0.5 761,778 - GFF1023 0.49 -0.1 761,932 + GFF1023 0.63 -0.1 762,040 + GFF1023 0.74 +0.8 762,045 - GFF1023 0.74 -0.2 762,128 + GFF1023 0.82 +0.1 762,128 + GFF1023 0.82 -0.2 762,128 + GFF1023 0.82 +0.9 762,128 + GFF1023 0.82 -0.4 762,129 - GFF1023 0.82 +0.4 762,212 + +0.1 762,212 + -0.2 762,213 - -0.3 762,214 - +0.1 762,381 + -0.2 762,385 - -0.1 762,640 - GFF1024 0.17 +1.1 762,745 + GFF1024 0.24 -0.1 762,911 - GFF1024 0.36 -0.1 762,911 - GFF1024 0.36 -0.2 762,943 + GFF1024 0.38 -0.4 762,943 + GFF1024 0.38 -0.1 762,943 + GFF1024 0.38 +0.5 762,944 - GFF1024 0.38 +1.0 762,944 - GFF1024 0.38 -0.0 762,944 - GFF1024 0.38 +0.4 763,161 + GFF1024 0.53 -0.2 763,161 + GFF1024 0.53 -0.1 763,161 + GFF1024 0.53 +0.7 763,825 + +0.2 763,865 + +0.1 763,925 + -0.0 764,106 - GFF1025 0.33 -0.5 764,148 + GFF1025 0.39 -0.0 764,148 + GFF1025 0.39 -0.6 764,148 + GFF1025 0.39 +1.0 764,148 + GFF1025 0.39 -0.0 764,676 + +0.2 764,677 - -0.3 764,710 + +0.1
Or see this region's nucleotide sequence