Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05183 and BACOVA_05184 are separated by 168 nucleotides BACOVA_05184 and BACOVA_05185 are separated by 126 nucleotides BACOVA_05185 and BACOVA_05186 are separated by 112 nucleotides
BACOVA_05183: BACOVA_05183 - Alpha-N-acetylglucosaminidase (NAGLU), at 674,349 to 676,484
_05183
BACOVA_05184: BACOVA_05184 - RNA polymerase sigma-70 factor, at 676,653 to 677,216
_05184
BACOVA_05185: BACOVA_05185 - sigma factor regulatory protein, FecR/PupR family, at 677,343 to 678,377
_05185
BACOVA_05186: BACOVA_05186 - TonB-linked outer membrane protein, SusC/RagA family, at 678,490 to 681,705
_05186
Position (kb) 677
678
679 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 676.460 kb on + strand at 676.460 kb on + strand at 676.482 kb on + strand at 676.499 kb on + strand at 676.500 kb on - strand at 676.502 kb on - strand at 676.504 kb on - strand at 676.507 kb on + strand at 676.508 kb on - strand at 676.510 kb on + strand at 676.518 kb on + strand at 676.519 kb on - strand at 676.519 kb on - strand at 676.521 kb on + strand at 676.522 kb on - strand at 676.522 kb on - strand at 676.523 kb on + strand at 676.524 kb on - strand at 676.540 kb on + strand at 676.553 kb on + strand at 676.562 kb on + strand at 676.563 kb on - strand at 676.613 kb on + strand at 676.615 kb on + strand at 676.615 kb on + strand at 676.635 kb on + strand at 676.635 kb on + strand at 676.636 kb on - strand at 676.676 kb on - strand at 676.734 kb on + strand, within BACOVA_05184 at 676.734 kb on + strand, within BACOVA_05184 at 676.757 kb on + strand, within BACOVA_05184 at 676.758 kb on - strand, within BACOVA_05184 at 676.758 kb on - strand, within BACOVA_05184 at 676.758 kb on - strand, within BACOVA_05184 at 676.781 kb on + strand, within BACOVA_05184 at 676.782 kb on - strand, within BACOVA_05184 at 676.782 kb on - strand, within BACOVA_05184 at 676.782 kb on - strand, within BACOVA_05184 at 676.782 kb on - strand, within BACOVA_05184 at 676.784 kb on - strand, within BACOVA_05184 at 676.784 kb on - strand, within BACOVA_05184 at 676.808 kb on + strand, within BACOVA_05184 at 676.822 kb on + strand, within BACOVA_05184 at 676.822 kb on + strand, within BACOVA_05184 at 676.869 kb on + strand, within BACOVA_05184 at 676.910 kb on - strand, within BACOVA_05184 at 676.916 kb on + strand, within BACOVA_05184 at 676.918 kb on + strand, within BACOVA_05184 at 676.918 kb on + strand, within BACOVA_05184 at 676.918 kb on + strand, within BACOVA_05184 at 676.919 kb on - strand, within BACOVA_05184 at 676.919 kb on - strand, within BACOVA_05184 at 677.026 kb on + strand, within BACOVA_05184 at 677.026 kb on + strand, within BACOVA_05184 at 677.027 kb on - strand, within BACOVA_05184 at 677.027 kb on - strand, within BACOVA_05184 at 677.039 kb on + strand, within BACOVA_05184 at 677.039 kb on + strand, within BACOVA_05184 at 677.040 kb on - strand, within BACOVA_05184 at 677.040 kb on - strand, within BACOVA_05184 at 677.040 kb on - strand, within BACOVA_05184 at 677.131 kb on + strand, within BACOVA_05184 at 677.131 kb on + strand, within BACOVA_05184 at 677.131 kb on + strand, within BACOVA_05184 at 677.132 kb on - strand, within BACOVA_05184 at 677.132 kb on - strand, within BACOVA_05184 at 677.132 kb on - strand, within BACOVA_05184 at 677.215 kb on - strand at 677.304 kb on - strand at 677.308 kb on + strand at 677.323 kb on - strand at 677.323 kb on - strand at 677.328 kb on + strand at 677.359 kb on + strand at 677.368 kb on + strand at 677.369 kb on - strand at 677.456 kb on + strand, within BACOVA_05185 at 677.469 kb on - strand, within BACOVA_05185 at 677.490 kb on - strand, within BACOVA_05185 at 677.612 kb on + strand, within BACOVA_05185 at 677.613 kb on - strand, within BACOVA_05185 at 677.613 kb on - strand, within BACOVA_05185 at 677.641 kb on + strand, within BACOVA_05185 at 677.642 kb on - strand, within BACOVA_05185 at 677.642 kb on - strand, within BACOVA_05185 at 677.660 kb on - strand, within BACOVA_05185 at 677.696 kb on + strand, within BACOVA_05185 at 677.697 kb on - strand, within BACOVA_05185 at 677.808 kb on - strand, within BACOVA_05185 at 677.814 kb on + strand, within BACOVA_05185 at 677.815 kb on - strand, within BACOVA_05185 at 677.846 kb on + strand, within BACOVA_05185 at 677.887 kb on + strand, within BACOVA_05185 at 677.919 kb on - strand, within BACOVA_05185 at 677.919 kb on - strand, within BACOVA_05185 at 677.920 kb on + strand, within BACOVA_05185 at 677.920 kb on + strand, within BACOVA_05185 at 677.921 kb on - strand, within BACOVA_05185 at 677.921 kb on - strand, within BACOVA_05185 at 678.011 kb on + strand, within BACOVA_05185 at 678.012 kb on - strand, within BACOVA_05185 at 678.040 kb on - strand, within BACOVA_05185 at 678.077 kb on - strand, within BACOVA_05185 at 678.117 kb on - strand, within BACOVA_05185 at 678.143 kb on + strand, within BACOVA_05185 at 678.144 kb on - strand, within BACOVA_05185 at 678.168 kb on + strand, within BACOVA_05185 at 678.168 kb on + strand, within BACOVA_05185 at 678.169 kb on - strand, within BACOVA_05185 at 678.170 kb on + strand, within BACOVA_05185 at 678.170 kb on + strand, within BACOVA_05185 at 678.199 kb on + strand, within BACOVA_05185 at 678.214 kb on + strand, within BACOVA_05185 at 678.215 kb on - strand, within BACOVA_05185 at 678.224 kb on + strand, within BACOVA_05185 at 678.230 kb on + strand, within BACOVA_05185 at 678.268 kb on + strand, within BACOVA_05185 at 678.268 kb on + strand, within BACOVA_05185 at 678.269 kb on - strand, within BACOVA_05185 at 678.289 kb on - strand at 678.312 kb on - strand at 678.323 kb on - strand at 678.353 kb on + strand at 678.376 kb on - strand at 678.417 kb on + strand at 678.459 kb on + strand at 678.466 kb on - strand at 678.481 kb on + strand at 678.482 kb on - strand at 678.498 kb on + strand at 678.511 kb on - strand at 678.515 kb on + strand at 678.516 kb on - strand at 678.529 kb on - strand at 678.562 kb on - strand at 678.562 kb on - strand at 678.564 kb on - strand at 678.580 kb on - strand at 678.584 kb on - strand at 678.584 kb on - strand at 678.584 kb on - strand at 678.604 kb on - strand at 678.607 kb on - strand at 678.648 kb on + strand at 678.669 kb on - strand at 678.675 kb on + strand at 678.675 kb on + strand at 678.679 kb on + strand at 678.681 kb on + strand at 678.681 kb on + strand at 678.691 kb on - strand at 678.744 kb on + strand at 678.745 kb on - strand at 678.756 kb on + strand at 678.757 kb on - strand at 678.785 kb on - strand at 678.785 kb on - strand at 678.791 kb on + strand at 678.792 kb on - strand at 678.804 kb on + strand at 678.805 kb on - strand at 678.879 kb on - strand, within BACOVA_05186 at 678.883 kb on - strand, within BACOVA_05186 at 678.912 kb on + strand, within BACOVA_05186 at 678.943 kb on - strand, within BACOVA_05186 at 678.943 kb on - strand, within BACOVA_05186 at 678.995 kb on - strand, within BACOVA_05186 at 678.996 kb on - strand, within BACOVA_05186 at 679.009 kb on + strand, within BACOVA_05186 at 679.009 kb on + strand, within BACOVA_05186 at 679.011 kb on + strand, within BACOVA_05186 at 679.012 kb on - strand, within BACOVA_05186 at 679.070 kb on + strand, within BACOVA_05186 at 679.101 kb on - strand, within BACOVA_05186 at 679.152 kb on + strand, within BACOVA_05186 at 679.153 kb on - strand, within BACOVA_05186 at 679.161 kb on - strand, within BACOVA_05186 at 679.197 kb on + strand, within BACOVA_05186 at 679.363 kb on - strand, within BACOVA_05186
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 676,460 + -1.3 676,460 + -0.2 676,482 + -3.4 676,499 + -1.3 676,500 - -1.5 676,502 - -1.1 676,504 - -0.1 676,507 + -0.5 676,508 - -0.9 676,510 + -0.0 676,518 + +0.3 676,519 - +0.7 676,519 - -0.1 676,521 + -1.1 676,522 - +0.2 676,522 - -0.0 676,523 + +0.1 676,524 - -1.1 676,540 + +3.4 676,553 + -0.1 676,562 + -0.7 676,563 - -0.0 676,613 + +0.7 676,615 + +0.3 676,615 + -0.7 676,635 + -1.2 676,635 + -1.9 676,636 - +0.8 676,676 - +0.4 676,734 + BACOVA_05184 0.14 +0.7 676,734 + BACOVA_05184 0.14 -0.5 676,757 + BACOVA_05184 0.18 +2.7 676,758 - BACOVA_05184 0.19 -0.8 676,758 - BACOVA_05184 0.19 -1.5 676,758 - BACOVA_05184 0.19 -1.0 676,781 + BACOVA_05184 0.23 +0.0 676,782 - BACOVA_05184 0.23 +0.9 676,782 - BACOVA_05184 0.23 +0.2 676,782 - BACOVA_05184 0.23 -0.0 676,782 - BACOVA_05184 0.23 -0.4 676,784 - BACOVA_05184 0.23 +0.3 676,784 - BACOVA_05184 0.23 +0.7 676,808 + BACOVA_05184 0.27 -0.6 676,822 + BACOVA_05184 0.30 +0.3 676,822 + BACOVA_05184 0.30 +1.5 676,869 + BACOVA_05184 0.38 +1.1 676,910 - BACOVA_05184 0.46 -0.8 676,916 + BACOVA_05184 0.47 -0.1 676,918 + BACOVA_05184 0.47 -0.1 676,918 + BACOVA_05184 0.47 -3.5 676,918 + BACOVA_05184 0.47 -0.2 676,919 - BACOVA_05184 0.47 -0.6 676,919 - BACOVA_05184 0.47 +0.0 677,026 + BACOVA_05184 0.66 -2.5 677,026 + BACOVA_05184 0.66 +0.2 677,027 - BACOVA_05184 0.66 +0.6 677,027 - BACOVA_05184 0.66 -1.3 677,039 + BACOVA_05184 0.68 +0.9 677,039 + BACOVA_05184 0.68 -0.5 677,040 - BACOVA_05184 0.69 +0.0 677,040 - BACOVA_05184 0.69 +0.9 677,040 - BACOVA_05184 0.69 +2.5 677,131 + BACOVA_05184 0.85 -0.3 677,131 + BACOVA_05184 0.85 +0.2 677,131 + BACOVA_05184 0.85 +0.8 677,132 - BACOVA_05184 0.85 +1.8 677,132 - BACOVA_05184 0.85 -0.5 677,132 - BACOVA_05184 0.85 -1.1 677,215 - -0.8 677,304 - +0.2 677,308 + -0.7 677,323 - -0.6 677,323 - +0.7 677,328 + -0.2 677,359 + +2.7 677,368 + +1.1 677,369 - +2.3 677,456 + BACOVA_05185 0.11 -0.5 677,469 - BACOVA_05185 0.12 -0.4 677,490 - BACOVA_05185 0.14 -0.2 677,612 + BACOVA_05185 0.26 -1.1 677,613 - BACOVA_05185 0.26 -0.1 677,613 - BACOVA_05185 0.26 -0.1 677,641 + BACOVA_05185 0.29 +0.6 677,642 - BACOVA_05185 0.29 -0.8 677,642 - BACOVA_05185 0.29 +0.3 677,660 - BACOVA_05185 0.31 +1.3 677,696 + BACOVA_05185 0.34 -0.2 677,697 - BACOVA_05185 0.34 +0.1 677,808 - BACOVA_05185 0.45 -0.8 677,814 + BACOVA_05185 0.46 -1.9 677,815 - BACOVA_05185 0.46 -0.0 677,846 + BACOVA_05185 0.49 +0.5 677,887 + BACOVA_05185 0.53 +0.6 677,919 - BACOVA_05185 0.56 -0.8 677,919 - BACOVA_05185 0.56 +0.2 677,920 + BACOVA_05185 0.56 -0.1 677,920 + BACOVA_05185 0.56 +0.3 677,921 - BACOVA_05185 0.56 -0.7 677,921 - BACOVA_05185 0.56 -2.1 678,011 + BACOVA_05185 0.65 +1.1 678,012 - BACOVA_05185 0.65 -1.1 678,040 - BACOVA_05185 0.67 +0.6 678,077 - BACOVA_05185 0.71 -1.1 678,117 - BACOVA_05185 0.75 -1.8 678,143 + BACOVA_05185 0.77 +0.4 678,144 - BACOVA_05185 0.77 -0.0 678,168 + BACOVA_05185 0.80 -1.5 678,168 + BACOVA_05185 0.80 +0.6 678,169 - BACOVA_05185 0.80 +0.7 678,170 + BACOVA_05185 0.80 -2.2 678,170 + BACOVA_05185 0.80 -1.9 678,199 + BACOVA_05185 0.83 -1.4 678,214 + BACOVA_05185 0.84 -0.7 678,215 - BACOVA_05185 0.84 +0.5 678,224 + BACOVA_05185 0.85 -0.9 678,230 + BACOVA_05185 0.86 -0.5 678,268 + BACOVA_05185 0.89 +1.2 678,268 + BACOVA_05185 0.89 -0.2 678,269 - BACOVA_05185 0.89 -0.6 678,289 - -0.8 678,312 - -0.5 678,323 - -1.5 678,353 + -1.8 678,376 - -1.1 678,417 + -0.2 678,459 + -0.5 678,466 - -0.8 678,481 + -0.5 678,482 - -2.4 678,498 + -0.5 678,511 - -1.4 678,515 + +0.4 678,516 - -1.1 678,529 - +1.1 678,562 - -1.6 678,562 - +0.2 678,564 - -0.2 678,580 - +0.2 678,584 - +0.9 678,584 - +2.5 678,584 - +0.8 678,604 - -1.6 678,607 - -0.7 678,648 + +0.7 678,669 - -0.2 678,675 + -0.2 678,675 + -0.9 678,679 + -0.4 678,681 + -1.1 678,681 + -0.8 678,691 - -0.9 678,744 + +0.1 678,745 - -0.8 678,756 + -1.1 678,757 - -2.7 678,785 - +1.1 678,785 - -0.4 678,791 + +0.5 678,792 - -0.2 678,804 + -1.2 678,805 - -1.6 678,879 - BACOVA_05186 0.12 +1.2 678,883 - BACOVA_05186 0.12 +0.5 678,912 + BACOVA_05186 0.13 -0.0 678,943 - BACOVA_05186 0.14 +0.1 678,943 - BACOVA_05186 0.14 -0.4 678,995 - BACOVA_05186 0.16 -0.1 678,996 - BACOVA_05186 0.16 -0.2 679,009 + BACOVA_05186 0.16 +0.5 679,009 + BACOVA_05186 0.16 -0.9 679,011 + BACOVA_05186 0.16 +2.0 679,012 - BACOVA_05186 0.16 -1.5 679,070 + BACOVA_05186 0.18 +0.2 679,101 - BACOVA_05186 0.19 -2.4 679,152 + BACOVA_05186 0.21 +1.6 679,153 - BACOVA_05186 0.21 -0.2 679,161 - BACOVA_05186 0.21 -0.7 679,197 + BACOVA_05186 0.22 -2.0 679,363 - BACOVA_05186 0.27 -1.4
Or see this region's nucleotide sequence