Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05123 and BACOVA_05124 are separated by 120 nucleotides BACOVA_05124 and BACOVA_05125 overlap by 1 nucleotides BACOVA_05125 and BACOVA_05126 are separated by 389 nucleotides BACOVA_05126 and BACOVA_05127 are separated by 23 nucleotides
BACOVA_05123: BACOVA_05123 - tRNA dimethylallyltransferase, at 597,875 to 598,795
_05123
BACOVA_05124: BACOVA_05124 - hypothetical protein, at 598,916 to 599,020
_05124
BACOVA_05125: BACOVA_05125 - hypothetical protein, at 599,020 to 599,127
_05125
BACOVA_05126: BACOVA_05126 - TonB-dependent receptor plug domain protein, at 599,517 to 602,168
_05126
BACOVA_05127: BACOVA_05127 - hypothetical protein, at 602,192 to 603,457
_05127
Position (kb) 599
600
601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 598.569 kb on + strand, within BACOVA_05123 at 598.615 kb on + strand, within BACOVA_05123 at 598.616 kb on - strand, within BACOVA_05123 at 598.630 kb on + strand, within BACOVA_05123 at 598.632 kb on + strand, within BACOVA_05123 at 598.633 kb on - strand, within BACOVA_05123 at 598.672 kb on + strand, within BACOVA_05123 at 598.675 kb on - strand, within BACOVA_05123 at 598.676 kb on + strand, within BACOVA_05123 at 598.676 kb on + strand, within BACOVA_05123 at 598.676 kb on + strand, within BACOVA_05123 at 598.759 kb on + strand at 598.770 kb on - strand at 598.785 kb on + strand at 598.795 kb on + strand at 598.796 kb on - strand at 598.848 kb on + strand at 598.873 kb on + strand at 598.874 kb on - strand at 598.874 kb on - strand at 598.894 kb on + strand at 598.907 kb on - strand at 598.913 kb on + strand at 598.935 kb on + strand, within BACOVA_05124 at 598.972 kb on + strand, within BACOVA_05124 at 598.972 kb on + strand, within BACOVA_05124 at 598.973 kb on - strand, within BACOVA_05124 at 598.976 kb on + strand, within BACOVA_05124 at 598.981 kb on + strand, within BACOVA_05124 at 598.984 kb on + strand, within BACOVA_05124 at 598.985 kb on - strand, within BACOVA_05124 at 599.085 kb on - strand, within BACOVA_05125 at 599.125 kb on + strand at 599.134 kb on + strand at 599.191 kb on + strand at 599.200 kb on + strand at 599.202 kb on + strand at 599.221 kb on + strand at 599.224 kb on - strand at 599.266 kb on + strand at 599.278 kb on - strand at 599.283 kb on - strand at 599.305 kb on - strand at 599.309 kb on + strand at 599.343 kb on + strand at 599.355 kb on - strand at 599.360 kb on - strand at 599.400 kb on + strand at 599.408 kb on - strand at 599.413 kb on - strand at 599.421 kb on + strand at 599.421 kb on + strand at 599.421 kb on + strand at 599.421 kb on + strand at 599.421 kb on + strand at 599.422 kb on - strand at 599.422 kb on - strand at 599.424 kb on - strand at 599.424 kb on - strand at 599.424 kb on - strand at 599.435 kb on - strand at 599.460 kb on - strand at 599.471 kb on + strand at 599.471 kb on + strand at 599.479 kb on + strand at 599.480 kb on - strand at 599.518 kb on + strand at 599.518 kb on + strand at 599.539 kb on - strand at 599.541 kb on + strand at 599.550 kb on + strand at 599.565 kb on - strand at 599.578 kb on - strand at 599.583 kb on + strand at 599.583 kb on + strand at 599.584 kb on - strand at 599.584 kb on - strand at 599.584 kb on - strand at 599.722 kb on + strand at 599.722 kb on + strand at 599.726 kb on + strand at 599.768 kb on + strand at 599.769 kb on - strand at 599.769 kb on - strand at 599.826 kb on - strand, within BACOVA_05126 at 599.828 kb on + strand, within BACOVA_05126 at 599.859 kb on + strand, within BACOVA_05126 at 599.860 kb on - strand, within BACOVA_05126 at 599.903 kb on + strand, within BACOVA_05126 at 599.947 kb on + strand, within BACOVA_05126 at 599.947 kb on + strand, within BACOVA_05126 at 599.948 kb on - strand, within BACOVA_05126 at 599.997 kb on - strand, within BACOVA_05126 at 600.000 kb on + strand, within BACOVA_05126 at 600.000 kb on + strand, within BACOVA_05126 at 600.000 kb on + strand, within BACOVA_05126 at 600.001 kb on - strand, within BACOVA_05126 at 600.023 kb on + strand, within BACOVA_05126 at 600.100 kb on + strand, within BACOVA_05126 at 600.100 kb on + strand, within BACOVA_05126 at 600.100 kb on + strand, within BACOVA_05126 at 600.111 kb on - strand, within BACOVA_05126 at 600.181 kb on + strand, within BACOVA_05126 at 600.205 kb on + strand, within BACOVA_05126 at 600.205 kb on + strand, within BACOVA_05126 at 600.206 kb on - strand, within BACOVA_05126 at 600.233 kb on - strand, within BACOVA_05126 at 600.341 kb on + strand, within BACOVA_05126 at 600.369 kb on - strand, within BACOVA_05126 at 600.369 kb on - strand, within BACOVA_05126 at 600.459 kb on - strand, within BACOVA_05126 at 600.477 kb on - strand, within BACOVA_05126 at 600.477 kb on - strand, within BACOVA_05126 at 600.497 kb on + strand, within BACOVA_05126 at 600.497 kb on + strand, within BACOVA_05126 at 600.498 kb on - strand, within BACOVA_05126 at 600.530 kb on - strand, within BACOVA_05126 at 600.530 kb on - strand, within BACOVA_05126 at 600.530 kb on - strand, within BACOVA_05126 at 600.561 kb on + strand, within BACOVA_05126 at 600.562 kb on - strand, within BACOVA_05126 at 600.562 kb on - strand, within BACOVA_05126 at 600.666 kb on + strand, within BACOVA_05126 at 600.666 kb on + strand, within BACOVA_05126 at 600.666 kb on + strand, within BACOVA_05126 at 600.670 kb on + strand, within BACOVA_05126 at 600.693 kb on + strand, within BACOVA_05126 at 600.694 kb on - strand, within BACOVA_05126 at 600.710 kb on + strand, within BACOVA_05126 at 600.710 kb on + strand, within BACOVA_05126 at 600.820 kb on - strand, within BACOVA_05126 at 600.848 kb on + strand, within BACOVA_05126 at 600.964 kb on + strand, within BACOVA_05126 at 601.109 kb on + strand, within BACOVA_05126 at 601.109 kb on + strand, within BACOVA_05126 at 601.109 kb on + strand, within BACOVA_05126 at 601.111 kb on + strand, within BACOVA_05126 at 601.170 kb on - strand, within BACOVA_05126 at 601.170 kb on - strand, within BACOVA_05126 at 601.201 kb on + strand, within BACOVA_05126 at 601.201 kb on + strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.308 kb on + strand, within BACOVA_05126 at 601.308 kb on + strand, within BACOVA_05126 at 601.309 kb on - strand, within BACOVA_05126 at 601.309 kb on - strand, within BACOVA_05126 at 601.352 kb on + strand, within BACOVA_05126 at 601.401 kb on - strand, within BACOVA_05126 at 601.432 kb on + strand, within BACOVA_05126 at 601.432 kb on + strand, within BACOVA_05126 at 601.447 kb on + strand, within BACOVA_05126 at 601.452 kb on - strand, within BACOVA_05126 at 601.474 kb on - strand, within BACOVA_05126 at 601.496 kb on + strand, within BACOVA_05126 at 601.652 kb on + strand, within BACOVA_05126 at 601.653 kb on - strand, within BACOVA_05126 at 601.654 kb on + strand, within BACOVA_05126 at 601.655 kb on - strand, within BACOVA_05126 at 601.686 kb on - strand, within BACOVA_05126 at 601.700 kb on + strand, within BACOVA_05126 at 601.701 kb on - strand, within BACOVA_05126 at 601.704 kb on - strand, within BACOVA_05126 at 601.739 kb on - strand, within BACOVA_05126 at 601.760 kb on + strand, within BACOVA_05126 at 601.776 kb on - strand, within BACOVA_05126 at 601.790 kb on - strand, within BACOVA_05126 at 601.832 kb on + strand, within BACOVA_05126 at 601.872 kb on + strand, within BACOVA_05126 at 601.877 kb on + strand, within BACOVA_05126 at 601.904 kb on + strand at 601.925 kb on + strand at 601.928 kb on + strand at 602.010 kb on + strand at 602.015 kb on - strand at 602.044 kb on - strand at 602.060 kb on + strand at 602.060 kb on + strand at 602.066 kb on + strand at 602.067 kb on - strand at 602.067 kb on - strand at 602.074 kb on - strand at 602.109 kb on + strand at 602.110 kb on - strand at 602.130 kb on + strand at 602.131 kb on - strand at 602.131 kb on - strand at 602.139 kb on - strand at 602.153 kb on + strand at 602.169 kb on - strand at 602.173 kb on + strand at 602.173 kb on + strand at 602.187 kb on + strand at 602.187 kb on + strand at 602.194 kb on - strand at 602.240 kb on + strand at 602.245 kb on + strand at 602.275 kb on + strand at 602.275 kb on + strand at 602.276 kb on - strand at 602.282 kb on - strand at 602.325 kb on - strand, within BACOVA_05127 at 602.343 kb on - strand, within BACOVA_05127 at 602.370 kb on - strand, within BACOVA_05127 at 602.384 kb on + strand, within BACOVA_05127 at 602.385 kb on - strand, within BACOVA_05127 at 602.385 kb on - strand, within BACOVA_05127 at 602.435 kb on + strand, within BACOVA_05127 at 602.436 kb on - strand, within BACOVA_05127 at 602.465 kb on + strand, within BACOVA_05127 at 602.466 kb on - strand, within BACOVA_05127 at 602.485 kb on + strand, within BACOVA_05127 at 602.523 kb on - strand, within BACOVA_05127 at 602.523 kb on - strand, within BACOVA_05127 at 602.526 kb on + strand, within BACOVA_05127 at 602.527 kb on - strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.549 kb on + strand, within BACOVA_05127 at 602.564 kb on + strand, within BACOVA_05127 at 602.569 kb on + strand, within BACOVA_05127 at 602.569 kb on + strand, within BACOVA_05127 at 602.570 kb on - strand, within BACOVA_05127 at 602.593 kb on - strand, within BACOVA_05127 at 602.618 kb on - strand, within BACOVA_05127 at 602.814 kb on + strand, within BACOVA_05127 at 602.845 kb on + strand, within BACOVA_05127 at 602.846 kb on - strand, within BACOVA_05127 at 602.848 kb on + strand, within BACOVA_05127 at 602.934 kb on + strand, within BACOVA_05127 at 602.957 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.963 kb on - strand, within BACOVA_05127 at 602.963 kb on - strand, within BACOVA_05127 at 603.037 kb on + strand, within BACOVA_05127 at 603.116 kb on + strand, within BACOVA_05127
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 598,569 + BACOVA_05123 0.75 +0.3 598,615 + BACOVA_05123 0.80 -1.7 598,616 - BACOVA_05123 0.80 -0.8 598,630 + BACOVA_05123 0.82 -1.0 598,632 + BACOVA_05123 0.82 -2.1 598,633 - BACOVA_05123 0.82 +0.9 598,672 + BACOVA_05123 0.87 -1.4 598,675 - BACOVA_05123 0.87 -1.4 598,676 + BACOVA_05123 0.87 -0.4 598,676 + BACOVA_05123 0.87 -0.4 598,676 + BACOVA_05123 0.87 -0.4 598,759 + +0.0 598,770 - +0.1 598,785 + -1.1 598,795 + -1.8 598,796 - -2.1 598,848 + +1.8 598,873 + -0.5 598,874 - -0.2 598,874 - -0.1 598,894 + +1.8 598,907 - -0.0 598,913 + +0.4 598,935 + BACOVA_05124 0.18 -0.6 598,972 + BACOVA_05124 0.53 -0.4 598,972 + BACOVA_05124 0.53 -0.1 598,973 - BACOVA_05124 0.54 -0.6 598,976 + BACOVA_05124 0.57 +0.0 598,981 + BACOVA_05124 0.62 -1.2 598,984 + BACOVA_05124 0.65 +1.2 598,985 - BACOVA_05124 0.66 -0.2 599,085 - BACOVA_05125 0.60 +0.5 599,125 + +1.4 599,134 + +0.2 599,191 + +3.1 599,200 + +0.5 599,202 + -0.8 599,221 + +0.6 599,224 - -0.4 599,266 + -0.8 599,278 - -0.5 599,283 - -1.0 599,305 - +0.6 599,309 + -0.2 599,343 + -0.7 599,355 - +0.0 599,360 - -0.0 599,400 + -0.2 599,408 - -1.4 599,413 - +0.6 599,421 + -2.9 599,421 + -2.1 599,421 + +1.3 599,421 + +0.7 599,421 + +0.6 599,422 - -0.7 599,422 - +0.3 599,424 - -1.6 599,424 - +0.9 599,424 - -0.8 599,435 - +0.0 599,460 - +0.9 599,471 + -0.8 599,471 + -0.4 599,479 + -0.4 599,480 - -0.9 599,518 + -0.9 599,518 + -0.7 599,539 - -1.3 599,541 + -3.5 599,550 + -0.4 599,565 - +0.6 599,578 - +1.3 599,583 + +1.9 599,583 + +0.0 599,584 - -0.8 599,584 - -0.0 599,584 - -2.0 599,722 + -0.7 599,722 + +2.0 599,726 + -0.4 599,768 + -1.5 599,769 - -0.7 599,769 - +0.0 599,826 - BACOVA_05126 0.12 +2.1 599,828 + BACOVA_05126 0.12 -1.0 599,859 + BACOVA_05126 0.13 +1.0 599,860 - BACOVA_05126 0.13 -0.7 599,903 + BACOVA_05126 0.15 -1.9 599,947 + BACOVA_05126 0.16 +2.2 599,947 + BACOVA_05126 0.16 -1.3 599,948 - BACOVA_05126 0.16 +0.8 599,997 - BACOVA_05126 0.18 +0.8 600,000 + BACOVA_05126 0.18 +1.7 600,000 + BACOVA_05126 0.18 -1.2 600,000 + BACOVA_05126 0.18 -0.3 600,001 - BACOVA_05126 0.18 -1.5 600,023 + BACOVA_05126 0.19 -1.7 600,100 + BACOVA_05126 0.22 +0.7 600,100 + BACOVA_05126 0.22 +0.0 600,100 + BACOVA_05126 0.22 -0.7 600,111 - BACOVA_05126 0.22 -0.2 600,181 + BACOVA_05126 0.25 -2.3 600,205 + BACOVA_05126 0.26 -0.5 600,205 + BACOVA_05126 0.26 -2.9 600,206 - BACOVA_05126 0.26 -0.6 600,233 - BACOVA_05126 0.27 +0.4 600,341 + BACOVA_05126 0.31 +0.4 600,369 - BACOVA_05126 0.32 -1.3 600,369 - BACOVA_05126 0.32 -0.0 600,459 - BACOVA_05126 0.36 -0.4 600,477 - BACOVA_05126 0.36 +0.7 600,477 - BACOVA_05126 0.36 -0.6 600,497 + BACOVA_05126 0.37 +1.1 600,497 + BACOVA_05126 0.37 -0.8 600,498 - BACOVA_05126 0.37 -1.5 600,530 - BACOVA_05126 0.38 +0.0 600,530 - BACOVA_05126 0.38 +1.1 600,530 - BACOVA_05126 0.38 -0.1 600,561 + BACOVA_05126 0.39 -1.2 600,562 - BACOVA_05126 0.39 -0.2 600,562 - BACOVA_05126 0.39 +1.1 600,666 + BACOVA_05126 0.43 +1.2 600,666 + BACOVA_05126 0.43 -0.2 600,666 + BACOVA_05126 0.43 -1.1 600,670 + BACOVA_05126 0.43 -0.5 600,693 + BACOVA_05126 0.44 +1.9 600,694 - BACOVA_05126 0.44 +0.2 600,710 + BACOVA_05126 0.45 -1.9 600,710 + BACOVA_05126 0.45 -0.6 600,820 - BACOVA_05126 0.49 -0.7 600,848 + BACOVA_05126 0.50 -2.1 600,964 + BACOVA_05126 0.55 +1.5 601,109 + BACOVA_05126 0.60 -1.3 601,109 + BACOVA_05126 0.60 +1.5 601,109 + BACOVA_05126 0.60 -1.2 601,111 + BACOVA_05126 0.60 -0.3 601,170 - BACOVA_05126 0.62 -0.6 601,170 - BACOVA_05126 0.62 -1.3 601,201 + BACOVA_05126 0.63 -2.0 601,201 + BACOVA_05126 0.63 -0.7 601,202 - BACOVA_05126 0.64 +0.0 601,202 - BACOVA_05126 0.64 +0.5 601,202 - BACOVA_05126 0.64 -0.5 601,308 + BACOVA_05126 0.68 +0.2 601,308 + BACOVA_05126 0.68 +1.3 601,309 - BACOVA_05126 0.68 -0.3 601,309 - BACOVA_05126 0.68 -0.5 601,352 + BACOVA_05126 0.69 -1.0 601,401 - BACOVA_05126 0.71 -0.7 601,432 + BACOVA_05126 0.72 +1.2 601,432 + BACOVA_05126 0.72 -1.1 601,447 + BACOVA_05126 0.73 -0.5 601,452 - BACOVA_05126 0.73 -2.5 601,474 - BACOVA_05126 0.74 +1.3 601,496 + BACOVA_05126 0.75 +2.0 601,652 + BACOVA_05126 0.81 +1.6 601,653 - BACOVA_05126 0.81 -1.6 601,654 + BACOVA_05126 0.81 -0.1 601,655 - BACOVA_05126 0.81 -1.0 601,686 - BACOVA_05126 0.82 +0.5 601,700 + BACOVA_05126 0.82 +0.4 601,701 - BACOVA_05126 0.82 -0.1 601,704 - BACOVA_05126 0.82 +1.5 601,739 - BACOVA_05126 0.84 +0.6 601,760 + BACOVA_05126 0.85 -0.4 601,776 - BACOVA_05126 0.85 -1.8 601,790 - BACOVA_05126 0.86 +1.4 601,832 + BACOVA_05126 0.87 +0.0 601,872 + BACOVA_05126 0.89 -1.1 601,877 + BACOVA_05126 0.89 -0.8 601,904 + -1.1 601,925 + -1.2 601,928 + +2.3 602,010 + -1.4 602,015 - -2.3 602,044 - +0.1 602,060 + +0.0 602,060 + -0.3 602,066 + -1.0 602,067 - -1.5 602,067 - -1.5 602,074 - -0.9 602,109 + +2.1 602,110 - -2.2 602,130 + -1.2 602,131 - -0.6 602,131 - +0.7 602,139 - +2.7 602,153 + -0.8 602,169 - +1.6 602,173 + +0.0 602,173 + -0.5 602,187 + +1.0 602,187 + +0.8 602,194 - +0.6 602,240 + +0.3 602,245 + -0.2 602,275 + -1.0 602,275 + +0.5 602,276 - +0.0 602,282 - +2.8 602,325 - BACOVA_05127 0.11 -2.7 602,343 - BACOVA_05127 0.12 +0.3 602,370 - BACOVA_05127 0.14 -2.3 602,384 + BACOVA_05127 0.15 -1.1 602,385 - BACOVA_05127 0.15 +0.3 602,385 - BACOVA_05127 0.15 -0.4 602,435 + BACOVA_05127 0.19 -2.8 602,436 - BACOVA_05127 0.19 +0.8 602,465 + BACOVA_05127 0.22 -0.7 602,466 - BACOVA_05127 0.22 -1.1 602,485 + BACOVA_05127 0.23 +0.8 602,523 - BACOVA_05127 0.26 -0.1 602,523 - BACOVA_05127 0.26 -2.1 602,526 + BACOVA_05127 0.26 +0.8 602,527 - BACOVA_05127 0.26 -1.2 602,545 + BACOVA_05127 0.28 +1.2 602,545 + BACOVA_05127 0.28 -1.4 602,545 + BACOVA_05127 0.28 +1.9 602,549 + BACOVA_05127 0.28 -1.7 602,564 + BACOVA_05127 0.29 -0.4 602,569 + BACOVA_05127 0.30 +0.8 602,569 + BACOVA_05127 0.30 -1.5 602,570 - BACOVA_05127 0.30 -1.4 602,593 - BACOVA_05127 0.32 -0.8 602,618 - BACOVA_05127 0.34 -1.8 602,814 + BACOVA_05127 0.49 -0.7 602,845 + BACOVA_05127 0.52 -0.9 602,846 - BACOVA_05127 0.52 +2.0 602,848 + BACOVA_05127 0.52 -0.9 602,934 + BACOVA_05127 0.59 -0.2 602,957 + BACOVA_05127 0.60 +0.0 602,962 + BACOVA_05127 0.61 -2.9 602,962 + BACOVA_05127 0.61 -2.2 602,962 + BACOVA_05127 0.61 +0.3 602,962 + BACOVA_05127 0.61 -0.7 602,962 + BACOVA_05127 0.61 -2.8 602,962 + BACOVA_05127 0.61 -0.8 602,962 + BACOVA_05127 0.61 -0.9 602,963 - BACOVA_05127 0.61 +0.0 602,963 - BACOVA_05127 0.61 -2.2 603,037 + BACOVA_05127 0.67 -1.1 603,116 + BACOVA_05127 0.73 +3.6
Or see this region's nucleotide sequence