Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04618 and BACOVA_04619 are separated by 57 nucleotides BACOVA_04619 and BACOVA_04620 are separated by 415 nucleotides BACOVA_04620 and BACOVA_04621 are separated by 82 nucleotides BACOVA_04621 and BACOVA_04622 are separated by 23 nucleotides BACOVA_04622 and BACOVA_04623 are separated by 37 nucleotides
BACOVA_04618: BACOVA_04618 - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 15,503 to 16,723
_04618
BACOVA_04619: BACOVA_04619 - tRNA-Pro, at 16,781 to 16,855
_04619
BACOVA_04620: BACOVA_04620 - hypothetical protein, at 17,271 to 17,423
_04620
BACOVA_04621: BACOVA_04621 - site-specific recombinase, phage integrase family, at 17,506 to 18,780
_04621
BACOVA_04622: BACOVA_04622 - DNA binding domain, excisionase family, at 18,804 to 19,604
_04622
BACOVA_04623: BACOVA_04623 - hypothetical protein, at 19,642 to 20,670
_04623
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 16.563 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.612 kb on - strand at 16.613 kb on + strand at 16.614 kb on - strand at 16.614 kb on - strand at 16.616 kb on + strand at 16.617 kb on - strand at 16.654 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.661 kb on - strand at 16.686 kb on + strand at 16.686 kb on + strand at 16.687 kb on - strand at 16.687 kb on - strand at 16.696 kb on + strand at 16.697 kb on - strand at 16.702 kb on + strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.919 kb on + strand at 16.933 kb on + strand at 16.933 kb on + strand at 17.020 kb on + strand at 17.021 kb on - strand at 17.024 kb on + strand at 17.082 kb on + strand at 17.153 kb on - strand at 17.162 kb on - strand at 17.162 kb on - strand at 17.164 kb on - strand at 17.334 kb on - strand, within BACOVA_04620 at 17.479 kb on - strand at 17.530 kb on - strand at 17.535 kb on + strand at 17.597 kb on + strand at 17.597 kb on + strand at 17.598 kb on - strand at 17.603 kb on + strand at 17.622 kb on + strand at 17.623 kb on - strand at 17.632 kb on + strand at 17.670 kb on + strand, within BACOVA_04621 at 17.680 kb on - strand, within BACOVA_04621 at 17.692 kb on - strand, within BACOVA_04621 at 17.701 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.729 kb on - strand, within BACOVA_04621 at 17.730 kb on + strand, within BACOVA_04621 at 17.730 kb on + strand, within BACOVA_04621 at 17.750 kb on - strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.774 kb on + strand, within BACOVA_04621 at 17.798 kb on + strand, within BACOVA_04621 at 17.860 kb on + strand, within BACOVA_04621 at 17.861 kb on - strand, within BACOVA_04621 at 17.866 kb on + strand, within BACOVA_04621 at 17.871 kb on + strand, within BACOVA_04621 at 17.899 kb on - strand, within BACOVA_04621 at 17.939 kb on + strand, within BACOVA_04621 at 17.943 kb on + strand, within BACOVA_04621 at 17.943 kb on + strand, within BACOVA_04621 at 17.944 kb on - strand, within BACOVA_04621 at 17.944 kb on - strand, within BACOVA_04621 at 17.999 kb on + strand, within BACOVA_04621 at 18.000 kb on - strand, within BACOVA_04621 at 18.004 kb on + strand, within BACOVA_04621 at 18.005 kb on - strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.061 kb on - strand, within BACOVA_04621 at 18.064 kb on + strand, within BACOVA_04621 at 18.072 kb on + strand, within BACOVA_04621 at 18.126 kb on + strand, within BACOVA_04621 at 18.161 kb on + strand, within BACOVA_04621 at 18.194 kb on - strand, within BACOVA_04621 at 18.197 kb on + strand, within BACOVA_04621 at 18.222 kb on - strand, within BACOVA_04621 at 18.276 kb on - strand, within BACOVA_04621 at 18.313 kb on - strand, within BACOVA_04621 at 18.337 kb on - strand, within BACOVA_04621 at 18.371 kb on - strand, within BACOVA_04621 at 18.416 kb on + strand, within BACOVA_04621 at 18.417 kb on - strand, within BACOVA_04621 at 18.417 kb on - strand, within BACOVA_04621 at 18.445 kb on - strand, within BACOVA_04621 at 18.446 kb on + strand, within BACOVA_04621 at 18.446 kb on + strand, within BACOVA_04621 at 18.447 kb on - strand, within BACOVA_04621 at 18.468 kb on + strand, within BACOVA_04621 at 18.469 kb on - strand, within BACOVA_04621 at 18.477 kb on - strand, within BACOVA_04621 at 18.498 kb on + strand, within BACOVA_04621 at 18.533 kb on - strand, within BACOVA_04621 at 18.533 kb on - strand, within BACOVA_04621 at 18.540 kb on + strand, within BACOVA_04621 at 18.542 kb on + strand, within BACOVA_04621 at 18.543 kb on - strand, within BACOVA_04621 at 18.543 kb on - strand, within BACOVA_04621 at 18.543 kb on - strand, within BACOVA_04621 at 18.565 kb on - strand, within BACOVA_04621 at 18.567 kb on + strand, within BACOVA_04621 at 18.571 kb on - strand, within BACOVA_04621 at 18.584 kb on + strand, within BACOVA_04621 at 18.588 kb on + strand, within BACOVA_04621 at 18.596 kb on + strand, within BACOVA_04621 at 18.596 kb on + strand, within BACOVA_04621 at 18.597 kb on - strand, within BACOVA_04621 at 18.622 kb on + strand, within BACOVA_04621 at 18.623 kb on - strand, within BACOVA_04621 at 18.623 kb on - strand, within BACOVA_04621 at 18.623 kb on - strand, within BACOVA_04621 at 18.636 kb on + strand, within BACOVA_04621 at 18.636 kb on + strand, within BACOVA_04621 at 18.637 kb on - strand, within BACOVA_04621 at 18.645 kb on + strand, within BACOVA_04621 at 18.646 kb on - strand, within BACOVA_04621 at 18.713 kb on - strand at 18.736 kb on - strand at 18.753 kb on - strand at 18.773 kb on + strand at 18.776 kb on + strand at 18.779 kb on - strand at 18.800 kb on + strand at 18.841 kb on + strand at 18.845 kb on + strand at 18.892 kb on - strand, within BACOVA_04622 at 18.897 kb on + strand, within BACOVA_04622 at 18.910 kb on + strand, within BACOVA_04622 at 18.930 kb on - strand, within BACOVA_04622 at 18.943 kb on + strand, within BACOVA_04622 at 18.944 kb on - strand, within BACOVA_04622 at 18.944 kb on - strand, within BACOVA_04622 at 18.944 kb on - strand, within BACOVA_04622 at 18.955 kb on + strand, within BACOVA_04622 at 18.955 kb on + strand, within BACOVA_04622 at 18.956 kb on - strand, within BACOVA_04622 at 18.956 kb on - strand, within BACOVA_04622 at 18.956 kb on - strand, within BACOVA_04622 at 18.962 kb on + strand, within BACOVA_04622 at 18.963 kb on - strand, within BACOVA_04622 at 18.972 kb on - strand, within BACOVA_04622 at 18.987 kb on + strand, within BACOVA_04622 at 18.987 kb on + strand, within BACOVA_04622 at 18.987 kb on + strand, within BACOVA_04622 at 18.992 kb on + strand, within BACOVA_04622 at 18.992 kb on + strand, within BACOVA_04622 at 18.992 kb on + strand, within BACOVA_04622 at 19.015 kb on + strand, within BACOVA_04622 at 19.046 kb on - strand, within BACOVA_04622 at 19.046 kb on - strand, within BACOVA_04622 at 19.046 kb on - strand, within BACOVA_04622 at 19.061 kb on - strand, within BACOVA_04622 at 19.061 kb on - strand, within BACOVA_04622 at 19.086 kb on + strand, within BACOVA_04622 at 19.103 kb on + strand, within BACOVA_04622 at 19.125 kb on + strand, within BACOVA_04622 at 19.125 kb on + strand, within BACOVA_04622 at 19.125 kb on + strand, within BACOVA_04622 at 19.129 kb on + strand, within BACOVA_04622 at 19.130 kb on - strand, within BACOVA_04622 at 19.130 kb on - strand, within BACOVA_04622 at 19.132 kb on - strand, within BACOVA_04622 at 19.149 kb on + strand, within BACOVA_04622 at 19.150 kb on - strand, within BACOVA_04622 at 19.158 kb on - strand, within BACOVA_04622 at 19.160 kb on - strand, within BACOVA_04622 at 19.160 kb on - strand, within BACOVA_04622 at 19.184 kb on - strand, within BACOVA_04622 at 19.280 kb on + strand, within BACOVA_04622 at 19.304 kb on + strand, within BACOVA_04622 at 19.305 kb on - strand, within BACOVA_04622 at 19.332 kb on - strand, within BACOVA_04622 at 19.332 kb on - strand, within BACOVA_04622 at 19.335 kb on - strand, within BACOVA_04622 at 19.369 kb on + strand, within BACOVA_04622 at 19.382 kb on + strand, within BACOVA_04622 at 19.383 kb on - strand, within BACOVA_04622 at 19.405 kb on - strand, within BACOVA_04622 at 19.415 kb on + strand, within BACOVA_04622 at 19.415 kb on + strand, within BACOVA_04622 at 19.415 kb on + strand, within BACOVA_04622 at 19.422 kb on + strand, within BACOVA_04622 at 19.423 kb on - strand, within BACOVA_04622 at 19.423 kb on - strand, within BACOVA_04622 at 19.447 kb on + strand, within BACOVA_04622 at 19.447 kb on + strand, within BACOVA_04622 at 19.448 kb on - strand, within BACOVA_04622 at 19.585 kb on - strand at 19.587 kb on - strand at 19.590 kb on + strand at 19.591 kb on - strand at 19.595 kb on + strand at 19.595 kb on + strand at 19.596 kb on - strand at 19.601 kb on - strand at 19.614 kb on + strand at 19.615 kb on - strand at 19.641 kb on + strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.646 kb on - strand at 19.646 kb on - strand at 19.656 kb on - strand at 19.661 kb on + strand at 19.670 kb on + strand at 19.681 kb on - strand at 19.716 kb on + strand at 19.716 kb on + strand at 19.716 kb on + strand at 19.767 kb on + strand, within BACOVA_04623 at 19.767 kb on + strand, within BACOVA_04623 at 19.767 kb on + strand, within BACOVA_04623 at 19.769 kb on + strand, within BACOVA_04623 at 19.769 kb on + strand, within BACOVA_04623 at 19.769 kb on + strand, within BACOVA_04623 at 19.770 kb on - strand, within BACOVA_04623 at 19.770 kb on - strand, within BACOVA_04623
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 16,563 + BACOVA_04618 0.87 +1.1 16,594 + BACOVA_04618 0.89 -2.3 16,594 + BACOVA_04618 0.89 -0.4 16,612 - -0.6 16,613 + -1.6 16,614 - -1.1 16,614 - +0.1 16,616 + -1.5 16,617 - +0.7 16,654 + +0.8 16,660 + -0.9 16,660 + -0.8 16,660 + -1.9 16,661 - +1.8 16,686 + -0.4 16,686 + +2.2 16,687 - -0.5 16,687 - -0.8 16,696 + -2.9 16,697 - -0.2 16,702 + -0.4 16,703 - -1.9 16,703 - -1.4 16,703 - -0.1 16,919 + -1.7 16,933 + -1.4 16,933 + +0.2 17,020 + +1.8 17,021 - -0.9 17,024 + -0.7 17,082 + +0.2 17,153 - +1.0 17,162 - -0.2 17,162 - -0.8 17,164 - -0.8 17,334 - BACOVA_04620 0.41 -0.8 17,479 - +0.6 17,530 - +1.1 17,535 + -0.2 17,597 + -0.3 17,597 + -0.9 17,598 - +0.6 17,603 + -0.7 17,622 + -0.2 17,623 - -1.1 17,632 + +0.0 17,670 + BACOVA_04621 0.13 -3.0 17,680 - BACOVA_04621 0.14 -2.2 17,692 - BACOVA_04621 0.15 -1.3 17,701 - BACOVA_04621 0.15 -1.2 17,720 - BACOVA_04621 0.17 +0.6 17,720 - BACOVA_04621 0.17 +0.6 17,720 - BACOVA_04621 0.17 +1.2 17,728 + BACOVA_04621 0.17 -0.3 17,728 + BACOVA_04621 0.17 -1.4 17,728 + BACOVA_04621 0.17 -0.1 17,729 - BACOVA_04621 0.17 +0.3 17,730 + BACOVA_04621 0.18 -0.5 17,730 + BACOVA_04621 0.18 -0.3 17,750 - BACOVA_04621 0.19 -0.6 17,766 + BACOVA_04621 0.20 -0.9 17,766 + BACOVA_04621 0.20 +2.2 17,766 + BACOVA_04621 0.20 +0.6 17,774 + BACOVA_04621 0.21 -0.0 17,798 + BACOVA_04621 0.23 -1.0 17,860 + BACOVA_04621 0.28 +0.4 17,861 - BACOVA_04621 0.28 -1.5 17,866 + BACOVA_04621 0.28 +2.6 17,871 + BACOVA_04621 0.29 +0.1 17,899 - BACOVA_04621 0.31 +0.1 17,939 + BACOVA_04621 0.34 +2.5 17,943 + BACOVA_04621 0.34 +1.3 17,943 + BACOVA_04621 0.34 +1.6 17,944 - BACOVA_04621 0.34 -0.2 17,944 - BACOVA_04621 0.34 +0.6 17,999 + BACOVA_04621 0.39 -0.6 18,000 - BACOVA_04621 0.39 +1.3 18,004 + BACOVA_04621 0.39 -2.3 18,005 - BACOVA_04621 0.39 -0.1 18,060 + BACOVA_04621 0.43 +0.4 18,060 + BACOVA_04621 0.43 -0.1 18,060 + BACOVA_04621 0.43 +0.3 18,061 - BACOVA_04621 0.44 +1.8 18,064 + BACOVA_04621 0.44 +1.0 18,072 + BACOVA_04621 0.44 -1.3 18,126 + BACOVA_04621 0.49 -1.4 18,161 + BACOVA_04621 0.51 -2.3 18,194 - BACOVA_04621 0.54 -0.4 18,197 + BACOVA_04621 0.54 +0.5 18,222 - BACOVA_04621 0.56 -1.6 18,276 - BACOVA_04621 0.60 -0.3 18,313 - BACOVA_04621 0.63 +0.9 18,337 - BACOVA_04621 0.65 +2.2 18,371 - BACOVA_04621 0.68 +0.2 18,416 + BACOVA_04621 0.71 -1.5 18,417 - BACOVA_04621 0.71 -0.3 18,417 - BACOVA_04621 0.71 +0.4 18,445 - BACOVA_04621 0.74 -0.7 18,446 + BACOVA_04621 0.74 +0.2 18,446 + BACOVA_04621 0.74 -0.4 18,447 - BACOVA_04621 0.74 -0.2 18,468 + BACOVA_04621 0.75 -0.7 18,469 - BACOVA_04621 0.76 -0.8 18,477 - BACOVA_04621 0.76 -1.1 18,498 + BACOVA_04621 0.78 -0.2 18,533 - BACOVA_04621 0.81 -0.5 18,533 - BACOVA_04621 0.81 +2.0 18,540 + BACOVA_04621 0.81 -1.0 18,542 + BACOVA_04621 0.81 -0.1 18,543 - BACOVA_04621 0.81 -0.6 18,543 - BACOVA_04621 0.81 +2.0 18,543 - BACOVA_04621 0.81 +0.8 18,565 - BACOVA_04621 0.83 +0.2 18,567 + BACOVA_04621 0.83 +0.2 18,571 - BACOVA_04621 0.84 +1.2 18,584 + BACOVA_04621 0.85 -0.6 18,588 + BACOVA_04621 0.85 +1.8 18,596 + BACOVA_04621 0.85 +0.6 18,596 + BACOVA_04621 0.85 -0.5 18,597 - BACOVA_04621 0.86 +2.2 18,622 + BACOVA_04621 0.88 +1.3 18,623 - BACOVA_04621 0.88 +1.0 18,623 - BACOVA_04621 0.88 -0.0 18,623 - BACOVA_04621 0.88 +0.1 18,636 + BACOVA_04621 0.89 +0.1 18,636 + BACOVA_04621 0.89 -0.8 18,637 - BACOVA_04621 0.89 -0.2 18,645 + BACOVA_04621 0.89 +0.0 18,646 - BACOVA_04621 0.89 +1.4 18,713 - -0.4 18,736 - -0.3 18,753 - -0.5 18,773 + +0.2 18,776 + -0.7 18,779 - +0.0 18,800 + +1.2 18,841 + -0.4 18,845 + +2.2 18,892 - BACOVA_04622 0.11 -0.3 18,897 + BACOVA_04622 0.12 -0.8 18,910 + BACOVA_04622 0.13 +1.2 18,930 - BACOVA_04622 0.16 -0.5 18,943 + BACOVA_04622 0.17 -0.8 18,944 - BACOVA_04622 0.17 +0.0 18,944 - BACOVA_04622 0.17 -0.8 18,944 - BACOVA_04622 0.17 +0.2 18,955 + BACOVA_04622 0.19 -1.4 18,955 + BACOVA_04622 0.19 -0.9 18,956 - BACOVA_04622 0.19 +0.7 18,956 - BACOVA_04622 0.19 +3.2 18,956 - BACOVA_04622 0.19 +1.8 18,962 + BACOVA_04622 0.20 -0.9 18,963 - BACOVA_04622 0.20 -0.3 18,972 - BACOVA_04622 0.21 -1.1 18,987 + BACOVA_04622 0.23 -0.8 18,987 + BACOVA_04622 0.23 -1.0 18,987 + BACOVA_04622 0.23 -0.8 18,992 + BACOVA_04622 0.23 +1.0 18,992 + BACOVA_04622 0.23 +2.6 18,992 + BACOVA_04622 0.23 +0.9 19,015 + BACOVA_04622 0.26 +0.0 19,046 - BACOVA_04622 0.30 +1.4 19,046 - BACOVA_04622 0.30 -1.0 19,046 - BACOVA_04622 0.30 -0.0 19,061 - BACOVA_04622 0.32 -0.4 19,061 - BACOVA_04622 0.32 +0.1 19,086 + BACOVA_04622 0.35 +0.2 19,103 + BACOVA_04622 0.37 -1.2 19,125 + BACOVA_04622 0.40 -1.6 19,125 + BACOVA_04622 0.40 +0.2 19,125 + BACOVA_04622 0.40 -0.0 19,129 + BACOVA_04622 0.41 -0.4 19,130 - BACOVA_04622 0.41 +0.2 19,130 - BACOVA_04622 0.41 +1.6 19,132 - BACOVA_04622 0.41 +3.1 19,149 + BACOVA_04622 0.43 +2.1 19,150 - BACOVA_04622 0.43 -1.0 19,158 - BACOVA_04622 0.44 -0.2 19,160 - BACOVA_04622 0.44 -1.8 19,160 - BACOVA_04622 0.44 -0.4 19,184 - BACOVA_04622 0.47 -0.6 19,280 + BACOVA_04622 0.59 -2.3 19,304 + BACOVA_04622 0.62 +0.3 19,305 - BACOVA_04622 0.63 -2.2 19,332 - BACOVA_04622 0.66 -0.0 19,332 - BACOVA_04622 0.66 -0.4 19,335 - BACOVA_04622 0.66 +0.1 19,369 + BACOVA_04622 0.71 -1.0 19,382 + BACOVA_04622 0.72 +1.3 19,383 - BACOVA_04622 0.72 -0.9 19,405 - BACOVA_04622 0.75 -0.5 19,415 + BACOVA_04622 0.76 -0.2 19,415 + BACOVA_04622 0.76 +1.8 19,415 + BACOVA_04622 0.76 +1.4 19,422 + BACOVA_04622 0.77 +0.3 19,423 - BACOVA_04622 0.77 -0.2 19,423 - BACOVA_04622 0.77 -0.6 19,447 + BACOVA_04622 0.80 -1.1 19,447 + BACOVA_04622 0.80 +0.1 19,448 - BACOVA_04622 0.80 +0.2 19,585 - -0.6 19,587 - +0.4 19,590 + +0.8 19,591 - -1.1 19,595 + +0.4 19,595 + +0.6 19,596 - +0.7 19,601 - +0.4 19,614 + -1.2 19,615 - +1.0 19,641 + +0.2 19,645 + -1.5 19,645 + -0.2 19,645 + -1.0 19,646 - -2.7 19,646 - +0.7 19,656 - +0.4 19,661 + -3.1 19,670 + +0.7 19,681 - -0.0 19,716 + +0.4 19,716 + -1.6 19,716 + -2.2 19,767 + BACOVA_04623 0.12 +0.9 19,767 + BACOVA_04623 0.12 +1.2 19,767 + BACOVA_04623 0.12 -0.1 19,769 + BACOVA_04623 0.12 +0.9 19,769 + BACOVA_04623 0.12 -2.0 19,769 + BACOVA_04623 0.12 -0.1 19,770 - BACOVA_04623 0.12 +0.4 19,770 - BACOVA_04623 0.12 +1.7
Or see this region's nucleotide sequence