Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04294 and BACOVA_04295 are separated by 62 nucleotides BACOVA_04295 and BACOVA_04296 are separated by 279 nucleotides BACOVA_04296 and BACOVA_04297 are separated by 130 nucleotides
BACOVA_04294: BACOVA_04294 - SusD family protein, at 186,767 to 188,104
_04294
BACOVA_04295: BACOVA_04295 - hypothetical protein, at 188,167 to 188,265
_04295
BACOVA_04296: BACOVA_04296 - hypothetical protein, at 188,545 to 189,228
_04296
BACOVA_04297: BACOVA_04297 - alanine dehydrogenase, at 189,359 to 190,465
_04297
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 187.550 kb on - strand, within BACOVA_04294 at 187.598 kb on + strand, within BACOVA_04294 at 187.614 kb on + strand, within BACOVA_04294 at 187.640 kb on + strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.702 kb on + strand, within BACOVA_04294 at 187.739 kb on - strand, within BACOVA_04294 at 187.801 kb on - strand, within BACOVA_04294 at 187.847 kb on - strand, within BACOVA_04294 at 187.847 kb on - strand, within BACOVA_04294 at 187.882 kb on - strand, within BACOVA_04294 at 187.906 kb on - strand, within BACOVA_04294 at 188.016 kb on + strand at 188.017 kb on - strand at 188.031 kb on + strand at 188.032 kb on - strand at 188.083 kb on + strand at 188.105 kb on + strand at 188.145 kb on + strand at 188.145 kb on + strand at 188.145 kb on + strand at 188.146 kb on - strand at 188.197 kb on - strand, within BACOVA_04295 at 188.197 kb on - strand, within BACOVA_04295 at 188.201 kb on - strand, within BACOVA_04295 at 188.273 kb on + strand at 188.303 kb on + strand at 188.303 kb on + strand at 188.303 kb on + strand at 188.316 kb on - strand at 188.321 kb on - strand at 188.321 kb on - strand at 188.331 kb on - strand at 188.338 kb on + strand at 188.408 kb on + strand at 188.409 kb on - strand at 188.410 kb on + strand at 188.410 kb on + strand at 188.411 kb on - strand at 188.500 kb on + strand at 188.501 kb on - strand at 188.502 kb on + strand at 188.502 kb on + strand at 188.502 kb on + strand at 188.503 kb on - strand at 188.503 kb on - strand at 188.504 kb on + strand at 188.504 kb on + strand at 188.504 kb on + strand at 188.505 kb on - strand at 188.505 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.543 kb on + strand at 188.543 kb on + strand at 188.556 kb on + strand at 188.556 kb on + strand at 188.559 kb on + strand at 188.560 kb on - strand at 188.560 kb on - strand at 188.582 kb on + strand at 188.595 kb on - strand at 188.598 kb on + strand at 188.601 kb on + strand at 188.677 kb on + strand, within BACOVA_04296 at 188.677 kb on + strand, within BACOVA_04296 at 188.683 kb on - strand, within BACOVA_04296 at 188.685 kb on + strand, within BACOVA_04296 at 188.686 kb on - strand, within BACOVA_04296 at 188.686 kb on - strand, within BACOVA_04296 at 188.716 kb on + strand, within BACOVA_04296 at 188.747 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.815 kb on - strand, within BACOVA_04296 at 188.858 kb on + strand, within BACOVA_04296 at 188.858 kb on + strand, within BACOVA_04296 at 188.859 kb on - strand, within BACOVA_04296 at 188.902 kb on + strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.951 kb on + strand, within BACOVA_04296 at 188.979 kb on - strand, within BACOVA_04296 at 188.991 kb on + strand, within BACOVA_04296 at 188.992 kb on - strand, within BACOVA_04296 at 188.992 kb on - strand, within BACOVA_04296 at 189.098 kb on + strand, within BACOVA_04296 at 189.108 kb on + strand, within BACOVA_04296 at 189.109 kb on - strand, within BACOVA_04296 at 189.109 kb on - strand, within BACOVA_04296 at 189.109 kb on - strand, within BACOVA_04296 at 189.119 kb on + strand, within BACOVA_04296 at 189.120 kb on - strand, within BACOVA_04296 at 189.129 kb on + strand, within BACOVA_04296 at 189.155 kb on - strand, within BACOVA_04296 at 189.165 kb on - strand at 189.165 kb on - strand at 189.307 kb on + strand at 189.308 kb on - strand at 189.337 kb on + strand at 189.372 kb on + strand at 189.405 kb on + strand at 189.405 kb on + strand at 189.438 kb on + strand at 189.456 kb on + strand at 189.470 kb on - strand, within BACOVA_04297 at 189.480 kb on + strand, within BACOVA_04297 at 189.481 kb on - strand, within BACOVA_04297 at 189.526 kb on + strand, within BACOVA_04297 at 189.526 kb on + strand, within BACOVA_04297 at 189.527 kb on - strand, within BACOVA_04297 at 189.540 kb on + strand, within BACOVA_04297 at 189.540 kb on + strand, within BACOVA_04297 at 189.540 kb on + strand, within BACOVA_04297 at 189.541 kb on - strand, within BACOVA_04297 at 189.541 kb on - strand, within BACOVA_04297 at 189.547 kb on + strand, within BACOVA_04297 at 189.551 kb on + strand, within BACOVA_04297 at 189.551 kb on + strand, within BACOVA_04297 at 189.627 kb on + strand, within BACOVA_04297 at 189.628 kb on - strand, within BACOVA_04297 at 189.630 kb on + strand, within BACOVA_04297 at 189.697 kb on - strand, within BACOVA_04297 at 189.717 kb on + strand, within BACOVA_04297 at 189.775 kb on + strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.846 kb on + strand, within BACOVA_04297 at 189.847 kb on - strand, within BACOVA_04297 at 189.847 kb on - strand, within BACOVA_04297 at 189.871 kb on - strand, within BACOVA_04297 at 189.894 kb on + strand, within BACOVA_04297 at 189.895 kb on - strand, within BACOVA_04297 at 190.002 kb on + strand, within BACOVA_04297 at 190.002 kb on + strand, within BACOVA_04297 at 190.003 kb on - strand, within BACOVA_04297 at 190.013 kb on + strand, within BACOVA_04297 at 190.013 kb on + strand, within BACOVA_04297 at 190.014 kb on - strand, within BACOVA_04297 at 190.059 kb on + strand, within BACOVA_04297 at 190.090 kb on + strand, within BACOVA_04297 at 190.147 kb on - strand, within BACOVA_04297 at 190.149 kb on + strand, within BACOVA_04297 at 190.150 kb on - strand, within BACOVA_04297 at 190.150 kb on - strand, within BACOVA_04297 at 190.152 kb on + strand, within BACOVA_04297 at 190.153 kb on - strand, within BACOVA_04297 at 190.158 kb on + strand, within BACOVA_04297 at 190.158 kb on + strand, within BACOVA_04297 at 190.220 kb on + strand, within BACOVA_04297 at 190.220 kb on + strand, within BACOVA_04297 at 190.227 kb on + strand, within BACOVA_04297 at 190.227 kb on + strand, within BACOVA_04297 at 190.227 kb on + strand, within BACOVA_04297 at 190.227 kb on + strand, within BACOVA_04297
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 187,550 - BACOVA_04294 0.59 -1.0 187,598 + BACOVA_04294 0.62 +1.7 187,614 + BACOVA_04294 0.63 -2.5 187,640 + BACOVA_04294 0.65 +1.0 187,677 - BACOVA_04294 0.68 +3.4 187,677 - BACOVA_04294 0.68 +1.1 187,677 - BACOVA_04294 0.68 +2.1 187,702 + BACOVA_04294 0.70 -0.6 187,739 - BACOVA_04294 0.73 -0.6 187,801 - BACOVA_04294 0.77 +0.1 187,847 - BACOVA_04294 0.81 -0.4 187,847 - BACOVA_04294 0.81 -0.9 187,882 - BACOVA_04294 0.83 +1.5 187,906 - BACOVA_04294 0.85 -0.1 188,016 + -0.4 188,017 - -1.1 188,031 + -0.7 188,032 - +0.2 188,083 + -1.5 188,105 + -1.8 188,145 + -0.1 188,145 + -2.5 188,145 + -1.6 188,146 - -0.0 188,197 - BACOVA_04295 0.30 +0.2 188,197 - BACOVA_04295 0.30 -0.6 188,201 - BACOVA_04295 0.34 +1.3 188,273 + +1.9 188,303 + -0.3 188,303 + -0.6 188,303 + -0.7 188,316 - +0.0 188,321 - -0.2 188,321 - -0.6 188,331 - -2.4 188,338 + -0.4 188,408 + -0.8 188,409 - +0.1 188,410 + -0.2 188,410 + +0.9 188,411 - +1.6 188,500 + -1.0 188,501 - +0.2 188,502 + -1.0 188,502 + +0.2 188,502 + +2.4 188,503 - -1.1 188,503 - +0.7 188,504 + -1.4 188,504 + -2.2 188,504 + -0.7 188,505 - +0.4 188,505 - -1.1 188,507 - +0.1 188,507 - -0.4 188,507 - -3.0 188,507 - -2.1 188,543 + -1.0 188,543 + +2.2 188,556 + -1.6 188,556 + +2.0 188,559 + -0.6 188,560 - -0.4 188,560 - -0.5 188,582 + +1.3 188,595 - -0.5 188,598 + -0.8 188,601 + -0.7 188,677 + BACOVA_04296 0.19 +0.6 188,677 + BACOVA_04296 0.19 +0.6 188,683 - BACOVA_04296 0.20 +1.0 188,685 + BACOVA_04296 0.20 +0.6 188,686 - BACOVA_04296 0.21 -0.9 188,686 - BACOVA_04296 0.21 -1.2 188,716 + BACOVA_04296 0.25 +1.0 188,747 + BACOVA_04296 0.30 -0.4 188,756 + BACOVA_04296 0.31 -0.2 188,756 + BACOVA_04296 0.31 +0.1 188,756 + BACOVA_04296 0.31 -2.9 188,815 - BACOVA_04296 0.39 +1.8 188,858 + BACOVA_04296 0.46 -0.2 188,858 + BACOVA_04296 0.46 +0.9 188,859 - BACOVA_04296 0.46 -0.0 188,902 + BACOVA_04296 0.52 +0.7 188,921 - BACOVA_04296 0.55 +0.1 188,921 - BACOVA_04296 0.55 -1.3 188,921 - BACOVA_04296 0.55 +0.2 188,951 + BACOVA_04296 0.59 -0.5 188,979 - BACOVA_04296 0.63 -1.1 188,991 + BACOVA_04296 0.65 +0.4 188,992 - BACOVA_04296 0.65 -2.7 188,992 - BACOVA_04296 0.65 +0.6 189,098 + BACOVA_04296 0.81 +2.0 189,108 + BACOVA_04296 0.82 +0.9 189,109 - BACOVA_04296 0.82 +0.3 189,109 - BACOVA_04296 0.82 -1.6 189,109 - BACOVA_04296 0.82 +0.5 189,119 + BACOVA_04296 0.84 -1.5 189,120 - BACOVA_04296 0.84 +0.3 189,129 + BACOVA_04296 0.85 +1.6 189,155 - BACOVA_04296 0.89 +1.7 189,165 - -0.8 189,165 - +2.2 189,307 + -0.5 189,308 - +1.3 189,337 + +0.7 189,372 + -0.8 189,405 + -0.4 189,405 + +0.9 189,438 + -0.1 189,456 + -0.5 189,470 - BACOVA_04297 0.10 +0.6 189,480 + BACOVA_04297 0.11 -0.7 189,481 - BACOVA_04297 0.11 -0.5 189,526 + BACOVA_04297 0.15 -0.6 189,526 + BACOVA_04297 0.15 +0.8 189,527 - BACOVA_04297 0.15 -1.7 189,540 + BACOVA_04297 0.16 -0.6 189,540 + BACOVA_04297 0.16 +0.6 189,540 + BACOVA_04297 0.16 +2.6 189,541 - BACOVA_04297 0.16 -0.2 189,541 - BACOVA_04297 0.16 -0.9 189,547 + BACOVA_04297 0.17 -0.3 189,551 + BACOVA_04297 0.17 -0.4 189,551 + BACOVA_04297 0.17 -0.1 189,627 + BACOVA_04297 0.24 -2.4 189,628 - BACOVA_04297 0.24 +0.4 189,630 + BACOVA_04297 0.24 -0.6 189,697 - BACOVA_04297 0.31 +1.4 189,717 + BACOVA_04297 0.32 -0.1 189,775 + BACOVA_04297 0.38 +0.8 189,776 - BACOVA_04297 0.38 +0.2 189,776 - BACOVA_04297 0.38 +0.4 189,776 - BACOVA_04297 0.38 -1.3 189,776 - BACOVA_04297 0.38 +0.3 189,776 - BACOVA_04297 0.38 -0.4 189,776 - BACOVA_04297 0.38 +0.8 189,776 - BACOVA_04297 0.38 -0.6 189,846 + BACOVA_04297 0.44 -1.1 189,847 - BACOVA_04297 0.44 -2.8 189,847 - BACOVA_04297 0.44 -1.1 189,871 - BACOVA_04297 0.46 -0.7 189,894 + BACOVA_04297 0.48 +1.7 189,895 - BACOVA_04297 0.48 -0.9 190,002 + BACOVA_04297 0.58 -0.4 190,002 + BACOVA_04297 0.58 +0.9 190,003 - BACOVA_04297 0.58 -2.2 190,013 + BACOVA_04297 0.59 +0.6 190,013 + BACOVA_04297 0.59 +1.0 190,014 - BACOVA_04297 0.59 -1.7 190,059 + BACOVA_04297 0.63 -0.9 190,090 + BACOVA_04297 0.66 -0.2 190,147 - BACOVA_04297 0.71 -1.7 190,149 + BACOVA_04297 0.71 +0.4 190,150 - BACOVA_04297 0.71 -0.9 190,150 - BACOVA_04297 0.71 +2.4 190,152 + BACOVA_04297 0.72 +0.8 190,153 - BACOVA_04297 0.72 +0.2 190,158 + BACOVA_04297 0.72 +0.1 190,158 + BACOVA_04297 0.72 -1.0 190,220 + BACOVA_04297 0.78 -0.9 190,220 + BACOVA_04297 0.78 -0.7 190,227 + BACOVA_04297 0.78 +1.4 190,227 + BACOVA_04297 0.78 +0.2 190,227 + BACOVA_04297 0.78 -0.4 190,227 + BACOVA_04297 0.78 +0.6
Or see this region's nucleotide sequence