Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04295

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04294 and BACOVA_04295 are separated by 62 nucleotidesBACOVA_04295 and BACOVA_04296 are separated by 279 nucleotides BACOVA_04294: BACOVA_04294 - SusD family protein, at 186,767 to 188,104 _04294 BACOVA_04295: BACOVA_04295 - hypothetical protein, at 188,167 to 188,265 _04295 BACOVA_04296: BACOVA_04296 - hypothetical protein, at 188,545 to 189,228 _04296 Position (kb) 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 187.167 kb on - strand, within BACOVA_04294at 187.181 kb on + strand, within BACOVA_04294at 187.183 kb on + strand, within BACOVA_04294at 187.184 kb on - strand, within BACOVA_04294at 187.184 kb on - strand, within BACOVA_04294at 187.220 kb on + strand, within BACOVA_04294at 187.220 kb on + strand, within BACOVA_04294at 187.221 kb on - strand, within BACOVA_04294at 187.222 kb on + strand, within BACOVA_04294at 187.223 kb on - strand, within BACOVA_04294at 187.223 kb on - strand, within BACOVA_04294at 187.288 kb on - strand, within BACOVA_04294at 187.288 kb on - strand, within BACOVA_04294at 187.315 kb on - strand, within BACOVA_04294at 187.316 kb on + strand, within BACOVA_04294at 187.316 kb on + strand, within BACOVA_04294at 187.317 kb on - strand, within BACOVA_04294at 187.318 kb on + strand, within BACOVA_04294at 187.319 kb on - strand, within BACOVA_04294at 187.338 kb on + strand, within BACOVA_04294at 187.338 kb on + strand, within BACOVA_04294at 187.339 kb on - strand, within BACOVA_04294at 187.339 kb on - strand, within BACOVA_04294at 187.364 kb on - strand, within BACOVA_04294at 187.364 kb on - strand, within BACOVA_04294at 187.386 kb on - strand, within BACOVA_04294at 187.407 kb on + strand, within BACOVA_04294at 187.408 kb on - strand, within BACOVA_04294at 187.413 kb on + strand, within BACOVA_04294at 187.437 kb on - strand, within BACOVA_04294at 187.441 kb on - strand, within BACOVA_04294at 187.441 kb on - strand, within BACOVA_04294at 187.441 kb on - strand, within BACOVA_04294at 187.466 kb on + strand, within BACOVA_04294at 187.483 kb on + strand, within BACOVA_04294at 187.484 kb on - strand, within BACOVA_04294at 187.485 kb on + strand, within BACOVA_04294at 187.485 kb on + strand, within BACOVA_04294at 187.486 kb on - strand, within BACOVA_04294at 187.486 kb on - strand, within BACOVA_04294at 187.486 kb on - strand, within BACOVA_04294at 187.488 kb on + strand, within BACOVA_04294at 187.509 kb on + strand, within BACOVA_04294at 187.540 kb on + strand, within BACOVA_04294at 187.550 kb on - strand, within BACOVA_04294at 187.598 kb on + strand, within BACOVA_04294at 187.614 kb on + strand, within BACOVA_04294at 187.640 kb on + strand, within BACOVA_04294at 187.677 kb on - strand, within BACOVA_04294at 187.677 kb on - strand, within BACOVA_04294at 187.677 kb on - strand, within BACOVA_04294at 187.702 kb on + strand, within BACOVA_04294at 187.739 kb on - strand, within BACOVA_04294at 187.801 kb on - strand, within BACOVA_04294at 187.847 kb on - strand, within BACOVA_04294at 187.847 kb on - strand, within BACOVA_04294at 187.882 kb on - strand, within BACOVA_04294at 187.906 kb on - strand, within BACOVA_04294at 188.016 kb on + strandat 188.017 kb on - strandat 188.031 kb on + strandat 188.032 kb on - strandat 188.083 kb on + strandat 188.105 kb on + strandat 188.145 kb on + strandat 188.145 kb on + strandat 188.145 kb on + strandat 188.146 kb on - strandat 188.197 kb on - strand, within BACOVA_04295at 188.197 kb on - strand, within BACOVA_04295at 188.201 kb on - strand, within BACOVA_04295at 188.273 kb on + strandat 188.303 kb on + strandat 188.303 kb on + strandat 188.303 kb on + strandat 188.316 kb on - strandat 188.321 kb on - strandat 188.321 kb on - strandat 188.331 kb on - strandat 188.338 kb on + strandat 188.408 kb on + strandat 188.409 kb on - strandat 188.410 kb on + strandat 188.410 kb on + strandat 188.411 kb on - strandat 188.500 kb on + strandat 188.501 kb on - strandat 188.502 kb on + strandat 188.502 kb on + strandat 188.502 kb on + strandat 188.503 kb on - strandat 188.503 kb on - strandat 188.504 kb on + strandat 188.504 kb on + strandat 188.504 kb on + strandat 188.505 kb on - strandat 188.505 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.543 kb on + strandat 188.543 kb on + strandat 188.556 kb on + strandat 188.556 kb on + strandat 188.559 kb on + strandat 188.560 kb on - strandat 188.560 kb on - strandat 188.582 kb on + strandat 188.595 kb on - strandat 188.598 kb on + strandat 188.601 kb on + strandat 188.677 kb on + strand, within BACOVA_04296at 188.677 kb on + strand, within BACOVA_04296at 188.683 kb on - strand, within BACOVA_04296at 188.685 kb on + strand, within BACOVA_04296at 188.686 kb on - strand, within BACOVA_04296at 188.686 kb on - strand, within BACOVA_04296at 188.716 kb on + strand, within BACOVA_04296at 188.747 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.815 kb on - strand, within BACOVA_04296at 188.858 kb on + strand, within BACOVA_04296at 188.858 kb on + strand, within BACOVA_04296at 188.859 kb on - strand, within BACOVA_04296at 188.902 kb on + strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.951 kb on + strand, within BACOVA_04296at 188.979 kb on - strand, within BACOVA_04296at 188.991 kb on + strand, within BACOVA_04296at 188.992 kb on - strand, within BACOVA_04296at 188.992 kb on - strand, within BACOVA_04296at 189.098 kb on + strand, within BACOVA_04296at 189.108 kb on + strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.119 kb on + strand, within BACOVA_04296at 189.120 kb on - strand, within BACOVA_04296at 189.129 kb on + strand, within BACOVA_04296at 189.155 kb on - strand, within BACOVA_04296at 189.165 kb on - strandat 189.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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187,167 - BACOVA_04294 0.30 +1.3
187,181 + BACOVA_04294 0.31 +1.5
187,183 + BACOVA_04294 0.31 +0.9
187,184 - BACOVA_04294 0.31 +1.5
187,184 - BACOVA_04294 0.31 -0.1
187,220 + BACOVA_04294 0.34 -0.2
187,220 + BACOVA_04294 0.34 +1.0
187,221 - BACOVA_04294 0.34 -0.3
187,222 + BACOVA_04294 0.34 -1.0
187,223 - BACOVA_04294 0.34 +1.0
187,223 - BACOVA_04294 0.34 -0.3
187,288 - BACOVA_04294 0.39 -0.7
187,288 - BACOVA_04294 0.39 -1.0
187,315 - BACOVA_04294 0.41 -0.2
187,316 + BACOVA_04294 0.41 -1.3
187,316 + BACOVA_04294 0.41 +0.6
187,317 - BACOVA_04294 0.41 -1.4
187,318 + BACOVA_04294 0.41 -1.5
187,319 - BACOVA_04294 0.41 +0.0
187,338 + BACOVA_04294 0.43 +1.2
187,338 + BACOVA_04294 0.43 +0.3
187,339 - BACOVA_04294 0.43 -0.2
187,339 - BACOVA_04294 0.43 -0.1
187,364 - BACOVA_04294 0.45 +0.7
187,364 - BACOVA_04294 0.45 -0.6
187,386 - BACOVA_04294 0.46 -0.6
187,407 + BACOVA_04294 0.48 +2.8
187,408 - BACOVA_04294 0.48 +0.3
187,413 + BACOVA_04294 0.48 -0.5
187,437 - BACOVA_04294 0.50 +1.3
187,441 - BACOVA_04294 0.50 -0.6
187,441 - BACOVA_04294 0.50 +1.0
187,441 - BACOVA_04294 0.50 -1.0
187,466 + BACOVA_04294 0.52 +1.1
187,483 + BACOVA_04294 0.54 -1.3
187,484 - BACOVA_04294 0.54 -0.5
187,485 + BACOVA_04294 0.54 +0.5
187,485 + BACOVA_04294 0.54 -1.7
187,486 - BACOVA_04294 0.54 -0.6
187,486 - BACOVA_04294 0.54 -1.2
187,486 - BACOVA_04294 0.54 +1.3
187,488 + BACOVA_04294 0.54 +0.0
187,509 + BACOVA_04294 0.55 -0.6
187,540 + BACOVA_04294 0.58 +1.0
187,550 - BACOVA_04294 0.59 -1.0
187,598 + BACOVA_04294 0.62 +1.7
187,614 + BACOVA_04294 0.63 -2.5
187,640 + BACOVA_04294 0.65 +1.0
187,677 - BACOVA_04294 0.68 +3.4
187,677 - BACOVA_04294 0.68 +1.1
187,677 - BACOVA_04294 0.68 +2.1
187,702 + BACOVA_04294 0.70 -0.6
187,739 - BACOVA_04294 0.73 -0.6
187,801 - BACOVA_04294 0.77 +0.1
187,847 - BACOVA_04294 0.81 -0.4
187,847 - BACOVA_04294 0.81 -0.9
187,882 - BACOVA_04294 0.83 +1.5
187,906 - BACOVA_04294 0.85 -0.1
188,016 + -0.4
188,017 - -1.1
188,031 + -0.7
188,032 - +0.2
188,083 + -1.5
188,105 + -1.8
188,145 + -0.1
188,145 + -2.5
188,145 + -1.6
188,146 - -0.0
188,197 - BACOVA_04295 0.30 +0.2
188,197 - BACOVA_04295 0.30 -0.6
188,201 - BACOVA_04295 0.34 +1.3
188,273 + +1.9
188,303 + -0.3
188,303 + -0.6
188,303 + -0.7
188,316 - +0.0
188,321 - -0.2
188,321 - -0.6
188,331 - -2.4
188,338 + -0.4
188,408 + -0.8
188,409 - +0.1
188,410 + -0.2
188,410 + +0.9
188,411 - +1.6
188,500 + -1.0
188,501 - +0.2
188,502 + -1.0
188,502 + +0.2
188,502 + +2.4
188,503 - -1.1
188,503 - +0.7
188,504 + -1.4
188,504 + -2.2
188,504 + -0.7
188,505 - +0.4
188,505 - -1.1
188,507 - +0.1
188,507 - -0.4
188,507 - -3.0
188,507 - -2.1
188,543 + -1.0
188,543 + +2.2
188,556 + -1.6
188,556 + +2.0
188,559 + -0.6
188,560 - -0.4
188,560 - -0.5
188,582 + +1.3
188,595 - -0.5
188,598 + -0.8
188,601 + -0.7
188,677 + BACOVA_04296 0.19 +0.6
188,677 + BACOVA_04296 0.19 +0.6
188,683 - BACOVA_04296 0.20 +1.0
188,685 + BACOVA_04296 0.20 +0.6
188,686 - BACOVA_04296 0.21 -0.9
188,686 - BACOVA_04296 0.21 -1.2
188,716 + BACOVA_04296 0.25 +1.0
188,747 + BACOVA_04296 0.30 -0.4
188,756 + BACOVA_04296 0.31 -0.2
188,756 + BACOVA_04296 0.31 +0.1
188,756 + BACOVA_04296 0.31 -2.9
188,815 - BACOVA_04296 0.39 +1.8
188,858 + BACOVA_04296 0.46 -0.2
188,858 + BACOVA_04296 0.46 +0.9
188,859 - BACOVA_04296 0.46 -0.0
188,902 + BACOVA_04296 0.52 +0.7
188,921 - BACOVA_04296 0.55 +0.1
188,921 - BACOVA_04296 0.55 -1.3
188,921 - BACOVA_04296 0.55 +0.2
188,951 + BACOVA_04296 0.59 -0.5
188,979 - BACOVA_04296 0.63 -1.1
188,991 + BACOVA_04296 0.65 +0.4
188,992 - BACOVA_04296 0.65 -2.7
188,992 - BACOVA_04296 0.65 +0.6
189,098 + BACOVA_04296 0.81 +2.0
189,108 + BACOVA_04296 0.82 +0.9
189,109 - BACOVA_04296 0.82 +0.3
189,109 - BACOVA_04296 0.82 -1.6
189,109 - BACOVA_04296 0.82 +0.5
189,119 + BACOVA_04296 0.84 -1.5
189,120 - BACOVA_04296 0.84 +0.3
189,129 + BACOVA_04296 0.85 +1.6
189,155 - BACOVA_04296 0.89 +1.7
189,165 - -0.8
189,165 - +2.2

Or see this region's nucleotide sequence