Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04282

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04281 and BACOVA_04282 are separated by 4 nucleotidesBACOVA_04282 and BACOVA_04283 are separated by 8 nucleotidesBACOVA_04283 and BACOVA_04284 are separated by 450 nucleotides BACOVA_04281: BACOVA_04281 - ABC transporter, ATP-binding protein, at 168,880 to 170,514 _04281 BACOVA_04282: BACOVA_04282 - hypothetical protein, at 170,519 to 170,665 _04282 BACOVA_04283: BACOVA_04283 - hypothetical protein, at 170,674 to 170,796 _04283 BACOVA_04284: BACOVA_04284 - hydrolase, NUDIX family, at 171,247 to 172,035 _04284 Position (kb) 170 171Strain fitness (log2 ratio) -2 -1 0 1 2 3at 169.526 kb on - strand, within BACOVA_04281at 169.550 kb on - strand, within BACOVA_04281at 169.593 kb on + strand, within BACOVA_04281at 169.616 kb on + strand, within BACOVA_04281at 169.617 kb on - strand, within BACOVA_04281at 169.620 kb on + strand, within BACOVA_04281at 169.673 kb on + strand, within BACOVA_04281at 169.690 kb on - strand, within BACOVA_04281at 169.693 kb on - strand, within BACOVA_04281at 169.694 kb on + strand, within BACOVA_04281at 169.756 kb on - strand, within BACOVA_04281at 169.756 kb on - strand, within BACOVA_04281at 169.847 kb on + strand, within BACOVA_04281at 169.893 kb on - strand, within BACOVA_04281at 169.912 kb on - strand, within BACOVA_04281at 169.922 kb on - strand, within BACOVA_04281at 169.959 kb on + strand, within BACOVA_04281at 170.030 kb on + strand, within BACOVA_04281at 170.063 kb on + strand, within BACOVA_04281at 170.124 kb on + strand, within BACOVA_04281at 170.124 kb on + strand, within BACOVA_04281at 170.125 kb on - strand, within BACOVA_04281at 170.129 kb on - strand, within BACOVA_04281at 170.129 kb on - strand, within BACOVA_04281at 170.134 kb on + strand, within BACOVA_04281at 170.176 kb on - strand, within BACOVA_04281at 170.191 kb on + strand, within BACOVA_04281at 170.191 kb on + strand, within BACOVA_04281at 170.228 kb on + strand, within BACOVA_04281at 170.229 kb on - strand, within BACOVA_04281at 170.236 kb on - strand, within BACOVA_04281at 170.248 kb on + strand, within BACOVA_04281at 170.340 kb on + strand, within BACOVA_04281at 170.347 kb on - strand, within BACOVA_04281at 170.356 kb on - strandat 170.376 kb on + strandat 170.377 kb on - strandat 170.377 kb on - strandat 170.377 kb on - strandat 170.393 kb on + strandat 170.419 kb on - strandat 170.447 kb on + strandat 170.504 kb on + strandat 170.504 kb on + strandat 170.512 kb on + strandat 170.513 kb on - strandat 170.513 kb on - strandat 170.517 kb on + strandat 170.517 kb on + strandat 170.518 kb on - strandat 170.553 kb on + strand, within BACOVA_04282at 170.554 kb on - strand, within BACOVA_04282at 170.583 kb on + strand, within BACOVA_04282at 170.584 kb on - strand, within BACOVA_04282at 170.658 kb on + strandat 170.658 kb on + strandat 170.698 kb on - strand, within BACOVA_04283at 170.714 kb on - strand, within BACOVA_04283at 170.778 kb on + strand, within BACOVA_04283at 170.779 kb on - strand, within BACOVA_04283at 170.813 kb on - strandat 170.838 kb on - strandat 171.169 kb on + strandat 171.182 kb on - strandat 171.238 kb on - strandat 171.276 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.354 kb on + strand, within BACOVA_04284at 171.355 kb on - strand, within BACOVA_04284at 171.361 kb on - strand, within BACOVA_04284at 171.388 kb on - strand, within BACOVA_04284at 171.394 kb on - strand, within BACOVA_04284at 171.398 kb on + strand, within BACOVA_04284at 171.484 kb on + strand, within BACOVA_04284at 171.490 kb on + strand, within BACOVA_04284at 171.490 kb on + strand, within BACOVA_04284at 171.491 kb on - strand, within BACOVA_04284at 171.491 kb on - strand, within BACOVA_04284at 171.638 kb on + strand, within BACOVA_04284at 171.639 kb on - strand, within BACOVA_04284at 171.663 kb on - strand, within BACOVA_04284

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
remove
169,526 - BACOVA_04281 0.40 -0.3
169,550 - BACOVA_04281 0.41 -1.1
169,593 + BACOVA_04281 0.44 -1.7
169,616 + BACOVA_04281 0.45 -1.9
169,617 - BACOVA_04281 0.45 -2.0
169,620 + BACOVA_04281 0.45 -0.1
169,673 + BACOVA_04281 0.49 -0.4
169,690 - BACOVA_04281 0.50 -1.0
169,693 - BACOVA_04281 0.50 +0.3
169,694 + BACOVA_04281 0.50 -0.5
169,756 - BACOVA_04281 0.54 +0.5
169,756 - BACOVA_04281 0.54 -1.4
169,847 + BACOVA_04281 0.59 -1.6
169,893 - BACOVA_04281 0.62 -1.6
169,912 - BACOVA_04281 0.63 +1.0
169,922 - BACOVA_04281 0.64 +2.1
169,959 + BACOVA_04281 0.66 -0.9
170,030 + BACOVA_04281 0.70 +0.1
170,063 + BACOVA_04281 0.72 +0.3
170,124 + BACOVA_04281 0.76 -0.6
170,124 + BACOVA_04281 0.76 +2.8
170,125 - BACOVA_04281 0.76 -2.1
170,129 - BACOVA_04281 0.76 -0.1
170,129 - BACOVA_04281 0.76 +1.5
170,134 + BACOVA_04281 0.77 -0.6
170,176 - BACOVA_04281 0.79 -0.2
170,191 + BACOVA_04281 0.80 -0.3
170,191 + BACOVA_04281 0.80 +0.6
170,228 + BACOVA_04281 0.82 -1.9
170,229 - BACOVA_04281 0.83 -1.0
170,236 - BACOVA_04281 0.83 +1.1
170,248 + BACOVA_04281 0.84 +1.6
170,340 + BACOVA_04281 0.89 -2.0
170,347 - BACOVA_04281 0.90 -0.7
170,356 - +1.3
170,376 + +0.1
170,377 - -0.9
170,377 - -0.3
170,377 - +2.3
170,393 + -1.8
170,419 - -1.1
170,447 + +1.0
170,504 + -2.3
170,504 + +1.1
170,512 + -0.3
170,513 - -0.8
170,513 - -0.7
170,517 + +0.8
170,517 + -2.2
170,518 - -1.6
170,553 + BACOVA_04282 0.23 -1.0
170,554 - BACOVA_04282 0.24 -1.4
170,583 + BACOVA_04282 0.44 -1.4
170,584 - BACOVA_04282 0.44 +0.4
170,658 + -1.2
170,658 + -0.6
170,698 - BACOVA_04283 0.20 -0.4
170,714 - BACOVA_04283 0.33 -0.0
170,778 + BACOVA_04283 0.85 -1.7
170,779 - BACOVA_04283 0.85 -1.2
170,813 - -1.4
170,838 - -0.7
171,169 + -0.1
171,182 - -1.8
171,238 - +1.0
171,276 + -0.0
171,323 + -1.9
171,323 + -0.4
171,323 + +1.0
171,323 + +2.8
171,324 - +0.0
171,324 - +2.4
171,324 - -0.5
171,324 - +2.8
171,354 + BACOVA_04284 0.14 -0.6
171,355 - BACOVA_04284 0.14 +1.6
171,361 - BACOVA_04284 0.14 -0.5
171,388 - BACOVA_04284 0.18 +0.5
171,394 - BACOVA_04284 0.19 -0.3
171,398 + BACOVA_04284 0.19 -0.0
171,484 + BACOVA_04284 0.30 -0.5
171,490 + BACOVA_04284 0.31 -2.4
171,490 + BACOVA_04284 0.31 +1.0
171,491 - BACOVA_04284 0.31 +0.0
171,491 - BACOVA_04284 0.31 -0.9
171,638 + BACOVA_04284 0.50 -1.8
171,639 - BACOVA_04284 0.50 +0.6
171,663 - BACOVA_04284 0.53 +1.8

Or see this region's nucleotide sequence