Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04280 and BACOVA_04281 are separated by 376 nucleotides BACOVA_04281 and BACOVA_04282 are separated by 4 nucleotides BACOVA_04282 and BACOVA_04283 are separated by 8 nucleotides BACOVA_04283 and BACOVA_04284 are separated by 450 nucleotides
BACOVA_04280: BACOVA_04280 - pyridine nucleotide-disulfide oxidoreductase, at 167,130 to 168,503
_04280
BACOVA_04281: BACOVA_04281 - ABC transporter, ATP-binding protein, at 168,880 to 170,514
_04281
BACOVA_04282: BACOVA_04282 - hypothetical protein, at 170,519 to 170,665
_04282
BACOVA_04283: BACOVA_04283 - hypothetical protein, at 170,674 to 170,796
_04283
BACOVA_04284: BACOVA_04284 - hydrolase, NUDIX family, at 171,247 to 172,035
_04284
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.898 kb on + strand, within BACOVA_04280 at 167.898 kb on + strand, within BACOVA_04280 at 167.899 kb on - strand, within BACOVA_04280 at 167.901 kb on + strand, within BACOVA_04280 at 167.901 kb on + strand, within BACOVA_04280 at 167.905 kb on + strand, within BACOVA_04280 at 167.905 kb on + strand, within BACOVA_04280 at 167.905 kb on + strand, within BACOVA_04280 at 168.030 kb on - strand, within BACOVA_04280 at 168.042 kb on - strand, within BACOVA_04280 at 168.044 kb on - strand, within BACOVA_04280 at 168.080 kb on + strand, within BACOVA_04280 at 168.172 kb on - strand, within BACOVA_04280 at 168.182 kb on + strand, within BACOVA_04280 at 168.182 kb on + strand, within BACOVA_04280 at 168.182 kb on + strand, within BACOVA_04280 at 168.240 kb on + strand, within BACOVA_04280 at 168.291 kb on - strand, within BACOVA_04280 at 168.312 kb on - strand, within BACOVA_04280 at 168.312 kb on - strand, within BACOVA_04280 at 168.312 kb on - strand, within BACOVA_04280 at 168.317 kb on - strand, within BACOVA_04280 at 168.317 kb on - strand, within BACOVA_04280 at 168.317 kb on - strand, within BACOVA_04280 at 168.332 kb on + strand, within BACOVA_04280 at 168.396 kb on - strand at 168.400 kb on + strand at 168.404 kb on + strand at 168.405 kb on - strand at 168.500 kb on - strand at 168.501 kb on + strand at 168.518 kb on - strand at 168.641 kb on + strand at 168.656 kb on + strand at 168.686 kb on + strand at 168.692 kb on - strand at 168.695 kb on + strand at 168.696 kb on - strand at 168.696 kb on - strand at 168.696 kb on - strand at 168.699 kb on + strand at 168.714 kb on + strand at 168.715 kb on - strand at 168.722 kb on - strand at 168.722 kb on - strand at 168.740 kb on - strand at 168.755 kb on + strand at 168.776 kb on + strand at 168.808 kb on + strand at 168.872 kb on - strand at 168.885 kb on + strand at 168.907 kb on + strand at 168.908 kb on - strand at 168.908 kb on - strand at 168.908 kb on - strand at 168.908 kb on - strand at 168.909 kb on + strand at 168.929 kb on + strand at 168.960 kb on + strand at 168.961 kb on - strand at 168.974 kb on + strand at 168.980 kb on + strand at 169.009 kb on - strand at 169.038 kb on - strand at 169.078 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.081 kb on + strand, within BACOVA_04281 at 169.082 kb on - strand, within BACOVA_04281 at 169.082 kb on - strand, within BACOVA_04281 at 169.082 kb on - strand, within BACOVA_04281 at 169.082 kb on - strand, within BACOVA_04281 at 169.084 kb on - strand, within BACOVA_04281 at 169.140 kb on - strand, within BACOVA_04281 at 169.265 kb on + strand, within BACOVA_04281 at 169.275 kb on + strand, within BACOVA_04281 at 169.338 kb on + strand, within BACOVA_04281 at 169.338 kb on + strand, within BACOVA_04281 at 169.364 kb on + strand, within BACOVA_04281 at 169.364 kb on + strand, within BACOVA_04281 at 169.365 kb on + strand, within BACOVA_04281 at 169.415 kb on + strand, within BACOVA_04281 at 169.418 kb on - strand, within BACOVA_04281 at 169.418 kb on - strand, within BACOVA_04281 at 169.526 kb on - strand, within BACOVA_04281 at 169.550 kb on - strand, within BACOVA_04281 at 169.593 kb on + strand, within BACOVA_04281 at 169.616 kb on + strand, within BACOVA_04281 at 169.617 kb on - strand, within BACOVA_04281 at 169.620 kb on + strand, within BACOVA_04281 at 169.673 kb on + strand, within BACOVA_04281 at 169.690 kb on - strand, within BACOVA_04281 at 169.693 kb on - strand, within BACOVA_04281 at 169.694 kb on + strand, within BACOVA_04281 at 169.756 kb on - strand, within BACOVA_04281 at 169.756 kb on - strand, within BACOVA_04281 at 169.847 kb on + strand, within BACOVA_04281 at 169.893 kb on - strand, within BACOVA_04281 at 169.912 kb on - strand, within BACOVA_04281 at 169.922 kb on - strand, within BACOVA_04281 at 169.959 kb on + strand, within BACOVA_04281 at 170.030 kb on + strand, within BACOVA_04281 at 170.063 kb on + strand, within BACOVA_04281 at 170.124 kb on + strand, within BACOVA_04281 at 170.124 kb on + strand, within BACOVA_04281 at 170.125 kb on - strand, within BACOVA_04281 at 170.129 kb on - strand, within BACOVA_04281 at 170.129 kb on - strand, within BACOVA_04281 at 170.134 kb on + strand, within BACOVA_04281 at 170.176 kb on - strand, within BACOVA_04281 at 170.191 kb on + strand, within BACOVA_04281 at 170.191 kb on + strand, within BACOVA_04281 at 170.228 kb on + strand, within BACOVA_04281 at 170.229 kb on - strand, within BACOVA_04281 at 170.236 kb on - strand, within BACOVA_04281 at 170.248 kb on + strand, within BACOVA_04281 at 170.340 kb on + strand, within BACOVA_04281 at 170.347 kb on - strand, within BACOVA_04281 at 170.356 kb on - strand at 170.376 kb on + strand at 170.377 kb on - strand at 170.377 kb on - strand at 170.377 kb on - strand at 170.393 kb on + strand at 170.419 kb on - strand at 170.447 kb on + strand at 170.504 kb on + strand at 170.504 kb on + strand at 170.512 kb on + strand at 170.513 kb on - strand at 170.513 kb on - strand at 170.517 kb on + strand at 170.517 kb on + strand at 170.518 kb on - strand at 170.553 kb on + strand, within BACOVA_04282 at 170.554 kb on - strand, within BACOVA_04282 at 170.583 kb on + strand, within BACOVA_04282 at 170.584 kb on - strand, within BACOVA_04282 at 170.658 kb on + strand at 170.658 kb on + strand at 170.698 kb on - strand, within BACOVA_04283 at 170.714 kb on - strand, within BACOVA_04283 at 170.778 kb on + strand, within BACOVA_04283 at 170.779 kb on - strand, within BACOVA_04283 at 170.813 kb on - strand at 170.838 kb on - strand at 171.169 kb on + strand at 171.182 kb on - strand at 171.238 kb on - strand at 171.276 kb on + strand at 171.323 kb on + strand at 171.323 kb on + strand at 171.323 kb on + strand at 171.323 kb on + strand at 171.324 kb on - strand at 171.324 kb on - strand at 171.324 kb on - strand at 171.324 kb on - strand at 171.354 kb on + strand, within BACOVA_04284 at 171.355 kb on - strand, within BACOVA_04284 at 171.361 kb on - strand, within BACOVA_04284 at 171.388 kb on - strand, within BACOVA_04284 at 171.394 kb on - strand, within BACOVA_04284 at 171.398 kb on + strand, within BACOVA_04284 at 171.484 kb on + strand, within BACOVA_04284 at 171.490 kb on + strand, within BACOVA_04284 at 171.490 kb on + strand, within BACOVA_04284 at 171.491 kb on - strand, within BACOVA_04284 at 171.491 kb on - strand, within BACOVA_04284
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 167,898 + BACOVA_04280 0.56 +0.2 167,898 + BACOVA_04280 0.56 -0.0 167,899 - BACOVA_04280 0.56 -1.2 167,901 + BACOVA_04280 0.56 +2.6 167,901 + BACOVA_04280 0.56 -2.1 167,905 + BACOVA_04280 0.56 +0.3 167,905 + BACOVA_04280 0.56 +0.4 167,905 + BACOVA_04280 0.56 -0.4 168,030 - BACOVA_04280 0.66 -0.2 168,042 - BACOVA_04280 0.66 +0.3 168,044 - BACOVA_04280 0.67 +0.5 168,080 + BACOVA_04280 0.69 -0.5 168,172 - BACOVA_04280 0.76 +1.5 168,182 + BACOVA_04280 0.77 -0.8 168,182 + BACOVA_04280 0.77 -0.3 168,182 + BACOVA_04280 0.77 +0.3 168,240 + BACOVA_04280 0.81 +2.0 168,291 - BACOVA_04280 0.84 -0.3 168,312 - BACOVA_04280 0.86 +2.1 168,312 - BACOVA_04280 0.86 -0.0 168,312 - BACOVA_04280 0.86 -1.9 168,317 - BACOVA_04280 0.86 -0.2 168,317 - BACOVA_04280 0.86 +0.9 168,317 - BACOVA_04280 0.86 -0.9 168,332 + BACOVA_04280 0.87 -1.5 168,396 - +0.5 168,400 + +0.1 168,404 + +2.4 168,405 - -0.9 168,500 - +0.2 168,501 + +0.8 168,518 - +0.9 168,641 + +0.5 168,656 + -1.4 168,686 + +0.6 168,692 - +0.3 168,695 + +1.8 168,696 - -0.7 168,696 - -1.5 168,696 - +1.0 168,699 + +2.9 168,714 + -0.2 168,715 - -2.8 168,722 - -0.9 168,722 - +1.4 168,740 - +0.6 168,755 + +1.1 168,776 + -2.5 168,808 + -0.7 168,872 - -0.7 168,885 + -1.3 168,907 + -2.0 168,908 - -0.2 168,908 - -0.7 168,908 - -1.1 168,908 - +0.4 168,909 + +1.9 168,929 + -0.4 168,960 + +1.1 168,961 - -0.2 168,974 + +0.1 168,980 + +1.6 169,009 - -0.9 169,038 - -0.1 169,078 + BACOVA_04281 0.12 +2.0 169,081 + BACOVA_04281 0.12 +0.3 169,081 + BACOVA_04281 0.12 +0.6 169,081 + BACOVA_04281 0.12 -0.4 169,081 + BACOVA_04281 0.12 +0.5 169,081 + BACOVA_04281 0.12 -0.7 169,082 - BACOVA_04281 0.12 -0.8 169,082 - BACOVA_04281 0.12 -1.7 169,082 - BACOVA_04281 0.12 +0.1 169,082 - BACOVA_04281 0.12 -1.6 169,084 - BACOVA_04281 0.12 -2.2 169,140 - BACOVA_04281 0.16 +0.6 169,265 + BACOVA_04281 0.24 -1.8 169,275 + BACOVA_04281 0.24 -2.4 169,338 + BACOVA_04281 0.28 +2.3 169,338 + BACOVA_04281 0.28 +0.6 169,364 + BACOVA_04281 0.30 -1.0 169,364 + BACOVA_04281 0.30 +2.2 169,365 + BACOVA_04281 0.30 -1.0 169,415 + BACOVA_04281 0.33 -0.5 169,418 - BACOVA_04281 0.33 -0.3 169,418 - BACOVA_04281 0.33 -0.6 169,526 - BACOVA_04281 0.40 -0.3 169,550 - BACOVA_04281 0.41 -1.1 169,593 + BACOVA_04281 0.44 -1.7 169,616 + BACOVA_04281 0.45 -1.9 169,617 - BACOVA_04281 0.45 -2.0 169,620 + BACOVA_04281 0.45 -0.1 169,673 + BACOVA_04281 0.49 -0.4 169,690 - BACOVA_04281 0.50 -1.0 169,693 - BACOVA_04281 0.50 +0.3 169,694 + BACOVA_04281 0.50 -0.5 169,756 - BACOVA_04281 0.54 +0.5 169,756 - BACOVA_04281 0.54 -1.4 169,847 + BACOVA_04281 0.59 -1.6 169,893 - BACOVA_04281 0.62 -1.6 169,912 - BACOVA_04281 0.63 +1.0 169,922 - BACOVA_04281 0.64 +2.1 169,959 + BACOVA_04281 0.66 -0.9 170,030 + BACOVA_04281 0.70 +0.1 170,063 + BACOVA_04281 0.72 +0.3 170,124 + BACOVA_04281 0.76 -0.6 170,124 + BACOVA_04281 0.76 +2.8 170,125 - BACOVA_04281 0.76 -2.1 170,129 - BACOVA_04281 0.76 -0.1 170,129 - BACOVA_04281 0.76 +1.5 170,134 + BACOVA_04281 0.77 -0.6 170,176 - BACOVA_04281 0.79 -0.2 170,191 + BACOVA_04281 0.80 -0.3 170,191 + BACOVA_04281 0.80 +0.6 170,228 + BACOVA_04281 0.82 -1.9 170,229 - BACOVA_04281 0.83 -1.0 170,236 - BACOVA_04281 0.83 +1.1 170,248 + BACOVA_04281 0.84 +1.6 170,340 + BACOVA_04281 0.89 -2.0 170,347 - BACOVA_04281 0.90 -0.7 170,356 - +1.3 170,376 + +0.1 170,377 - -0.9 170,377 - -0.3 170,377 - +2.3 170,393 + -1.8 170,419 - -1.1 170,447 + +1.0 170,504 + -2.3 170,504 + +1.1 170,512 + -0.3 170,513 - -0.8 170,513 - -0.7 170,517 + +0.8 170,517 + -2.2 170,518 - -1.6 170,553 + BACOVA_04282 0.23 -1.0 170,554 - BACOVA_04282 0.24 -1.4 170,583 + BACOVA_04282 0.44 -1.4 170,584 - BACOVA_04282 0.44 +0.4 170,658 + -1.2 170,658 + -0.6 170,698 - BACOVA_04283 0.20 -0.4 170,714 - BACOVA_04283 0.33 -0.0 170,778 + BACOVA_04283 0.85 -1.7 170,779 - BACOVA_04283 0.85 -1.2 170,813 - -1.4 170,838 - -0.7 171,169 + -0.1 171,182 - -1.8 171,238 - +1.0 171,276 + -0.0 171,323 + -1.9 171,323 + -0.4 171,323 + +1.0 171,323 + +2.8 171,324 - +0.0 171,324 - +2.4 171,324 - -0.5 171,324 - +2.8 171,354 + BACOVA_04284 0.14 -0.6 171,355 - BACOVA_04284 0.14 +1.6 171,361 - BACOVA_04284 0.14 -0.5 171,388 - BACOVA_04284 0.18 +0.5 171,394 - BACOVA_04284 0.19 -0.3 171,398 + BACOVA_04284 0.19 -0.0 171,484 + BACOVA_04284 0.30 -0.5 171,490 + BACOVA_04284 0.31 -2.4 171,490 + BACOVA_04284 0.31 +1.0 171,491 - BACOVA_04284 0.31 +0.0 171,491 - BACOVA_04284 0.31 -0.9
Or see this region's nucleotide sequence