Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03753

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03752 and BACOVA_03753 are separated by 2 nucleotidesBACOVA_03753 and BACOVA_03754 are separated by 27 nucleotides BACOVA_03752: BACOVA_03752 - carbamoyl-phosphate synthase, large subunit, at 81,784 to 85,011 _03752 BACOVA_03753: BACOVA_03753 - carbamoyl-phosphate synthase, small subunit, at 85,014 to 86,159 _03753 BACOVA_03754: BACOVA_03754 - class II glutamine amidotransferase, at 86,187 to 88,070 _03754 Position (kb) 85 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 84.127 kb on + strand, within BACOVA_03752at 84.170 kb on + strand, within BACOVA_03752at 84.170 kb on + strand, within BACOVA_03752at 84.171 kb on + strand, within BACOVA_03752at 84.171 kb on - strand, within BACOVA_03752at 84.175 kb on + strand, within BACOVA_03752at 84.176 kb on - strand, within BACOVA_03752at 84.213 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.237 kb on + strand, within BACOVA_03752at 84.237 kb on + strand, within BACOVA_03752at 84.238 kb on - strand, within BACOVA_03752at 84.242 kb on + strand, within BACOVA_03752at 84.339 kb on + strand, within BACOVA_03752at 84.361 kb on + strand, within BACOVA_03752at 84.371 kb on + strand, within BACOVA_03752at 84.371 kb on + strand, within BACOVA_03752at 84.372 kb on - strand, within BACOVA_03752at 84.410 kb on - strand, within BACOVA_03752at 84.412 kb on + strand, within BACOVA_03752at 84.504 kb on - strand, within BACOVA_03752at 84.520 kb on + strand, within BACOVA_03752at 84.616 kb on - strand, within BACOVA_03752at 84.687 kb on - strand, within BACOVA_03752at 84.711 kb on - strandat 84.711 kb on - strandat 84.759 kb on + strandat 84.759 kb on + strandat 84.760 kb on - strandat 84.760 kb on - strandat 84.760 kb on - strandat 84.762 kb on + strandat 84.762 kb on + strandat 84.825 kb on - strandat 84.862 kb on - strandat 84.862 kb on - strandat 84.879 kb on + strandat 84.880 kb on - strandat 84.916 kb on - strandat 84.916 kb on - strandat 84.935 kb on + strandat 84.983 kb on - strandat 84.988 kb on + strandat 84.989 kb on - strandat 85.184 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.188 kb on - strand, within BACOVA_03753at 85.240 kb on - strand, within BACOVA_03753at 85.245 kb on - strand, within BACOVA_03753at 85.265 kb on + strand, within BACOVA_03753at 85.289 kb on - strand, within BACOVA_03753at 85.380 kb on - strand, within BACOVA_03753at 85.435 kb on - strand, within BACOVA_03753at 85.465 kb on + strand, within BACOVA_03753at 85.491 kb on + strand, within BACOVA_03753at 85.492 kb on - strand, within BACOVA_03753at 85.496 kb on + strand, within BACOVA_03753at 85.497 kb on - strand, within BACOVA_03753at 85.497 kb on - strand, within BACOVA_03753at 85.520 kb on + strand, within BACOVA_03753at 85.520 kb on + strand, within BACOVA_03753at 85.521 kb on - strand, within BACOVA_03753at 85.559 kb on + strand, within BACOVA_03753at 85.648 kb on + strand, within BACOVA_03753at 85.656 kb on - strand, within BACOVA_03753at 85.671 kb on + strand, within BACOVA_03753at 85.680 kb on + strand, within BACOVA_03753at 85.681 kb on - strand, within BACOVA_03753at 85.684 kb on + strand, within BACOVA_03753at 85.684 kb on + strand, within BACOVA_03753at 85.685 kb on - strand, within BACOVA_03753at 85.685 kb on - strand, within BACOVA_03753at 85.699 kb on + strand, within BACOVA_03753at 85.778 kb on + strand, within BACOVA_03753at 85.870 kb on + strand, within BACOVA_03753at 85.870 kb on + strand, within BACOVA_03753at 85.870 kb on + strand, within BACOVA_03753at 85.877 kb on - strand, within BACOVA_03753at 85.882 kb on + strand, within BACOVA_03753at 85.959 kb on - strand, within BACOVA_03753at 85.959 kb on - strand, within BACOVA_03753at 85.980 kb on - strand, within BACOVA_03753at 85.998 kb on - strand, within BACOVA_03753at 86.020 kb on + strand, within BACOVA_03753at 86.063 kb on + strandat 86.064 kb on - strandat 86.074 kb on - strandat 86.142 kb on + strandat 86.163 kb on + strandat 86.163 kb on + strandat 86.163 kb on + strandat 86.179 kb on + strandat 86.180 kb on - strandat 86.208 kb on + strandat 86.209 kb on - strandat 86.211 kb on - strandat 86.211 kb on - strandat 86.211 kb on - strandat 86.212 kb on + strandat 86.212 kb on + strandat 86.255 kb on + strandat 86.261 kb on - strandat 86.261 kb on - strandat 86.261 kb on - strandat 86.416 kb on + strand, within BACOVA_03754at 86.416 kb on + strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.431 kb on + strand, within BACOVA_03754at 86.436 kb on + strand, within BACOVA_03754at 86.436 kb on + strand, within BACOVA_03754at 86.581 kb on + strand, within BACOVA_03754at 86.585 kb on - strand, within BACOVA_03754at 86.616 kb on + strand, within BACOVA_03754at 86.617 kb on - strand, within BACOVA_03754at 86.619 kb on + strand, within BACOVA_03754at 86.620 kb on - strand, within BACOVA_03754at 86.663 kb on + strand, within BACOVA_03754at 86.743 kb on + strand, within BACOVA_03754at 86.748 kb on - strand, within BACOVA_03754at 86.748 kb on - strand, within BACOVA_03754at 86.755 kb on + strand, within BACOVA_03754at 86.805 kb on - strand, within BACOVA_03754at 86.847 kb on - strand, within BACOVA_03754at 86.960 kb on - strand, within BACOVA_03754at 86.960 kb on - strand, within BACOVA_03754at 87.003 kb on - strand, within BACOVA_03754at 87.018 kb on - strand, within BACOVA_03754at 87.074 kb on + strand, within BACOVA_03754at 87.106 kb on + strand, within BACOVA_03754at 87.110 kb on + strand, within BACOVA_03754

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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84,127 + BACOVA_03752 0.73 +0.2
84,170 + BACOVA_03752 0.74 -0.5
84,170 + BACOVA_03752 0.74 -1.2
84,171 + BACOVA_03752 0.74 -1.1
84,171 - BACOVA_03752 0.74 -0.2
84,175 + BACOVA_03752 0.74 -1.1
84,176 - BACOVA_03752 0.74 -0.8
84,213 + BACOVA_03752 0.75 +0.2
84,217 + BACOVA_03752 0.75 +0.8
84,217 + BACOVA_03752 0.75 -1.3
84,217 + BACOVA_03752 0.75 +0.4
84,217 + BACOVA_03752 0.75 -0.9
84,217 + BACOVA_03752 0.75 -1.1
84,237 + BACOVA_03752 0.76 -2.7
84,237 + BACOVA_03752 0.76 +0.4
84,238 - BACOVA_03752 0.76 -0.7
84,242 + BACOVA_03752 0.76 -0.1
84,339 + BACOVA_03752 0.79 +0.9
84,361 + BACOVA_03752 0.80 +3.0
84,371 + BACOVA_03752 0.80 -0.8
84,371 + BACOVA_03752 0.80 +0.8
84,372 - BACOVA_03752 0.80 +0.7
84,410 - BACOVA_03752 0.81 -0.4
84,412 + BACOVA_03752 0.81 -0.2
84,504 - BACOVA_03752 0.84 +0.2
84,520 + BACOVA_03752 0.85 -1.9
84,616 - BACOVA_03752 0.88 -1.4
84,687 - BACOVA_03752 0.90 +0.6
84,711 - +0.8
84,711 - -1.2
84,759 + -0.6
84,759 + -2.8
84,760 - -1.3
84,760 - -1.3
84,760 - -0.3
84,762 + +0.7
84,762 + +0.5
84,825 - +1.8
84,862 - +0.7
84,862 - +0.2
84,879 + +0.9
84,880 - -0.8
84,916 - -1.1
84,916 - -0.8
84,935 + +1.3
84,983 - -0.9
84,988 + -0.6
84,989 - -0.1
85,184 + BACOVA_03753 0.15 -0.6
85,187 + BACOVA_03753 0.15 -1.4
85,187 + BACOVA_03753 0.15 +1.5
85,187 + BACOVA_03753 0.15 -0.4
85,187 + BACOVA_03753 0.15 -0.8
85,187 + BACOVA_03753 0.15 -1.4
85,187 + BACOVA_03753 0.15 -1.6
85,187 + BACOVA_03753 0.15 -1.2
85,188 - BACOVA_03753 0.15 +1.2
85,240 - BACOVA_03753 0.20 +0.7
85,245 - BACOVA_03753 0.20 +0.1
85,265 + BACOVA_03753 0.22 -1.2
85,289 - BACOVA_03753 0.24 -1.0
85,380 - BACOVA_03753 0.32 +0.5
85,435 - BACOVA_03753 0.37 +0.2
85,465 + BACOVA_03753 0.39 +0.2
85,491 + BACOVA_03753 0.42 -0.4
85,492 - BACOVA_03753 0.42 -0.6
85,496 + BACOVA_03753 0.42 -0.9
85,497 - BACOVA_03753 0.42 -0.6
85,497 - BACOVA_03753 0.42 +1.3
85,520 + BACOVA_03753 0.44 +0.1
85,520 + BACOVA_03753 0.44 -1.6
85,521 - BACOVA_03753 0.44 +0.5
85,559 + BACOVA_03753 0.48 -0.6
85,648 + BACOVA_03753 0.55 -3.0
85,656 - BACOVA_03753 0.56 +0.5
85,671 + BACOVA_03753 0.57 +1.5
85,680 + BACOVA_03753 0.58 -2.4
85,681 - BACOVA_03753 0.58 -1.1
85,684 + BACOVA_03753 0.58 +0.7
85,684 + BACOVA_03753 0.58 -0.4
85,685 - BACOVA_03753 0.59 -1.0
85,685 - BACOVA_03753 0.59 +1.6
85,699 + BACOVA_03753 0.60 -0.7
85,778 + BACOVA_03753 0.67 -1.4
85,870 + BACOVA_03753 0.75 -1.1
85,870 + BACOVA_03753 0.75 -0.8
85,870 + BACOVA_03753 0.75 -1.1
85,877 - BACOVA_03753 0.75 +2.1
85,882 + BACOVA_03753 0.76 -1.6
85,959 - BACOVA_03753 0.82 +1.1
85,959 - BACOVA_03753 0.82 -0.0
85,980 - BACOVA_03753 0.84 -0.8
85,998 - BACOVA_03753 0.86 +0.5
86,020 + BACOVA_03753 0.88 -0.3
86,063 + +0.6
86,064 - -0.9
86,074 - -1.9
86,142 + +1.8
86,163 + -0.2
86,163 + -2.7
86,163 + -0.1
86,179 + -1.3
86,180 - +0.4
86,208 + +1.9
86,209 - +0.6
86,211 - -0.1
86,211 - -0.6
86,211 - +1.2
86,212 + -0.6
86,212 + -0.8
86,255 + -1.6
86,261 - -0.5
86,261 - +0.6
86,261 - +0.9
86,416 + BACOVA_03754 0.12 +0.6
86,416 + BACOVA_03754 0.12 +0.5
86,417 - BACOVA_03754 0.12 -1.2
86,417 - BACOVA_03754 0.12 -1.4
86,417 - BACOVA_03754 0.12 -0.3
86,417 - BACOVA_03754 0.12 -0.4
86,417 - BACOVA_03754 0.12 +0.4
86,431 + BACOVA_03754 0.13 -1.0
86,436 + BACOVA_03754 0.13 -0.1
86,436 + BACOVA_03754 0.13 -0.3
86,581 + BACOVA_03754 0.21 -2.2
86,585 - BACOVA_03754 0.21 -0.1
86,616 + BACOVA_03754 0.23 -0.1
86,617 - BACOVA_03754 0.23 +0.5
86,619 + BACOVA_03754 0.23 -0.3
86,620 - BACOVA_03754 0.23 -1.7
86,663 + BACOVA_03754 0.25 -0.6
86,743 + BACOVA_03754 0.30 -0.3
86,748 - BACOVA_03754 0.30 +2.5
86,748 - BACOVA_03754 0.30 +0.0
86,755 + BACOVA_03754 0.30 -0.8
86,805 - BACOVA_03754 0.33 +0.1
86,847 - BACOVA_03754 0.35 -0.5
86,960 - BACOVA_03754 0.41 -1.0
86,960 - BACOVA_03754 0.41 -0.7
87,003 - BACOVA_03754 0.43 +0.4
87,018 - BACOVA_03754 0.44 -1.7
87,074 + BACOVA_03754 0.47 -0.2
87,106 + BACOVA_03754 0.49 -0.9
87,110 + BACOVA_03754 0.49 +0.2

Or see this region's nucleotide sequence