Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03723

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03721 and BACOVA_03722 are separated by 271 nucleotidesBACOVA_03722 and BACOVA_03723 are separated by 97 nucleotidesBACOVA_03723 and BACOVA_03724 are separated by 62 nucleotides BACOVA_03721: BACOVA_03721 - threonine/alanine tRNA ligase second additional domain protein, at 49,303 to 49,779 _03721 BACOVA_03722: BACOVA_03722 - Hsp20/alpha crystallin family protein, at 50,051 to 50,479 _03722 BACOVA_03723: BACOVA_03723 - ABC-2 type transporter, at 50,577 to 51,707 _03723 BACOVA_03724: BACOVA_03724 - ABC-2 type transporter, at 51,770 to 52,873 _03724 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.589 kb on + strand, within BACOVA_03721at 49.594 kb on - strand, within BACOVA_03721at 49.645 kb on + strand, within BACOVA_03721at 49.646 kb on - strand, within BACOVA_03721at 49.646 kb on - strand, within BACOVA_03721at 49.676 kb on + strand, within BACOVA_03721at 49.677 kb on - strand, within BACOVA_03721at 49.677 kb on - strand, within BACOVA_03721at 49.683 kb on + strand, within BACOVA_03721at 49.684 kb on - strand, within BACOVA_03721at 49.713 kb on + strand, within BACOVA_03721at 49.714 kb on - strand, within BACOVA_03721at 49.718 kb on - strand, within BACOVA_03721at 49.718 kb on - strand, within BACOVA_03721at 49.723 kb on + strand, within BACOVA_03721at 49.724 kb on - strand, within BACOVA_03721at 49.777 kb on + strandat 49.807 kb on - strandat 49.923 kb on + strandat 49.925 kb on + strandat 50.004 kb on + strandat 50.013 kb on + strandat 50.036 kb on + strandat 50.036 kb on + strandat 50.037 kb on - strandat 50.051 kb on - strandat 50.063 kb on - strandat 50.138 kb on - strand, within BACOVA_03722at 50.332 kb on + strand, within BACOVA_03722at 50.333 kb on - strand, within BACOVA_03722at 50.394 kb on + strand, within BACOVA_03722at 50.478 kb on - strandat 50.515 kb on + strandat 50.516 kb on - strandat 50.526 kb on - strandat 50.570 kb on - strandat 50.572 kb on + strandat 50.573 kb on - strandat 50.573 kb on - strandat 50.578 kb on + strandat 50.597 kb on + strandat 50.616 kb on - strandat 50.640 kb on + strandat 50.641 kb on - strandat 50.683 kb on - strandat 50.686 kb on + strandat 50.708 kb on + strand, within BACOVA_03723at 50.708 kb on + strand, within BACOVA_03723at 50.711 kb on - strand, within BACOVA_03723at 50.732 kb on + strand, within BACOVA_03723at 50.732 kb on + strand, within BACOVA_03723at 50.733 kb on - strand, within BACOVA_03723at 50.733 kb on - strand, within BACOVA_03723at 50.733 kb on - strand, within BACOVA_03723at 50.739 kb on + strand, within BACOVA_03723at 50.759 kb on + strand, within BACOVA_03723at 50.819 kb on + strand, within BACOVA_03723at 50.819 kb on + strand, within BACOVA_03723at 50.819 kb on + strand, within BACOVA_03723at 50.820 kb on - strand, within BACOVA_03723at 50.828 kb on + strand, within BACOVA_03723at 50.829 kb on - strand, within BACOVA_03723at 50.829 kb on - strand, within BACOVA_03723at 50.829 kb on - strand, within BACOVA_03723at 50.852 kb on - strand, within BACOVA_03723at 50.852 kb on - strand, within BACOVA_03723at 50.861 kb on + strand, within BACOVA_03723at 50.917 kb on - strand, within BACOVA_03723at 50.919 kb on + strand, within BACOVA_03723at 50.964 kb on + strand, within BACOVA_03723at 50.964 kb on + strand, within BACOVA_03723at 50.968 kb on + strand, within BACOVA_03723at 50.973 kb on + strand, within BACOVA_03723at 50.974 kb on - strand, within BACOVA_03723at 51.032 kb on + strand, within BACOVA_03723at 51.033 kb on - strand, within BACOVA_03723at 51.075 kb on + strand, within BACOVA_03723at 51.076 kb on - strand, within BACOVA_03723at 51.093 kb on + strand, within BACOVA_03723at 51.094 kb on - strand, within BACOVA_03723at 51.094 kb on - strand, within BACOVA_03723at 51.094 kb on - strand, within BACOVA_03723at 51.129 kb on + strand, within BACOVA_03723at 51.130 kb on - strand, within BACOVA_03723at 51.158 kb on + strand, within BACOVA_03723at 51.160 kb on + strand, within BACOVA_03723at 51.167 kb on + strand, within BACOVA_03723at 51.201 kb on - strand, within BACOVA_03723at 51.211 kb on - strand, within BACOVA_03723at 51.282 kb on - strand, within BACOVA_03723at 51.282 kb on - strand, within BACOVA_03723at 51.284 kb on + strand, within BACOVA_03723at 51.287 kb on + strand, within BACOVA_03723at 51.288 kb on - strand, within BACOVA_03723at 51.298 kb on + strand, within BACOVA_03723at 51.298 kb on + strand, within BACOVA_03723at 51.298 kb on + strand, within BACOVA_03723at 51.299 kb on - strand, within BACOVA_03723at 51.299 kb on - strand, within BACOVA_03723at 51.299 kb on - strand, within BACOVA_03723at 51.299 kb on - strand, within BACOVA_03723at 51.352 kb on - strand, within BACOVA_03723at 51.352 kb on - strand, within BACOVA_03723at 51.352 kb on - strand, within BACOVA_03723at 51.352 kb on - strand, within BACOVA_03723at 51.359 kb on + strand, within BACOVA_03723at 51.413 kb on + strand, within BACOVA_03723at 51.484 kb on + strand, within BACOVA_03723at 51.504 kb on - strand, within BACOVA_03723at 51.540 kb on - strand, within BACOVA_03723at 51.602 kb on + strandat 51.709 kb on + strandat 51.710 kb on - strandat 51.724 kb on + strandat 51.734 kb on + strandat 51.734 kb on + strandat 51.745 kb on + strandat 51.745 kb on + strandat 51.768 kb on + strandat 51.769 kb on - strandat 51.771 kb on + strandat 51.772 kb on - strandat 51.772 kb on - strandat 51.781 kb on + strandat 51.812 kb on - strandat 51.812 kb on - strandat 51.812 kb on - strandat 51.831 kb on - strandat 51.838 kb on + strandat 51.839 kb on - strandat 51.850 kb on + strandat 51.852 kb on + strandat 51.870 kb on - strandat 51.902 kb on + strand, within BACOVA_03724at 51.904 kb on + strand, within BACOVA_03724at 51.906 kb on + strand, within BACOVA_03724at 51.907 kb on - strand, within BACOVA_03724at 51.923 kb on + strand, within BACOVA_03724at 51.944 kb on + strand, within BACOVA_03724at 51.944 kb on + strand, within BACOVA_03724at 51.962 kb on + strand, within BACOVA_03724at 51.963 kb on - strand, within BACOVA_03724at 52.043 kb on - strand, within BACOVA_03724at 52.103 kb on + strand, within BACOVA_03724at 52.130 kb on + strand, within BACOVA_03724at 52.176 kb on - strand, within BACOVA_03724at 52.203 kb on + strand, within BACOVA_03724at 52.203 kb on + strand, within BACOVA_03724at 52.203 kb on + strand, within BACOVA_03724at 52.208 kb on + strand, within BACOVA_03724at 52.208 kb on + strand, within BACOVA_03724at 52.208 kb on + strand, within BACOVA_03724at 52.228 kb on + strand, within BACOVA_03724at 52.256 kb on + strand, within BACOVA_03724at 52.259 kb on + strand, within BACOVA_03724at 52.260 kb on - strand, within BACOVA_03724at 52.426 kb on + strand, within BACOVA_03724at 52.456 kb on + strand, within BACOVA_03724at 52.480 kb on + strand, within BACOVA_03724at 52.529 kb on + strand, within BACOVA_03724at 52.529 kb on + strand, within BACOVA_03724at 52.660 kb on - strand, within BACOVA_03724at 52.660 kb on - strand, within BACOVA_03724

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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49,589 + BACOVA_03721 0.60 +0.9
49,594 - BACOVA_03721 0.61 -1.4
49,645 + BACOVA_03721 0.72 -1.0
49,646 - BACOVA_03721 0.72 -0.3
49,646 - BACOVA_03721 0.72 -0.3
49,676 + BACOVA_03721 0.78 +1.1
49,677 - BACOVA_03721 0.78 +1.5
49,677 - BACOVA_03721 0.78 +1.9
49,683 + BACOVA_03721 0.80 -1.3
49,684 - BACOVA_03721 0.80 -1.0
49,713 + BACOVA_03721 0.86 -2.2
49,714 - BACOVA_03721 0.86 -1.5
49,718 - BACOVA_03721 0.87 +0.1
49,718 - BACOVA_03721 0.87 -0.1
49,723 + BACOVA_03721 0.88 -0.9
49,724 - BACOVA_03721 0.88 -1.1
49,777 + +0.9
49,807 - -2.1
49,923 + -1.4
49,925 + -0.5
50,004 + +0.1
50,013 + +0.7
50,036 + -1.3
50,036 + -1.1
50,037 - +0.6
50,051 - -0.4
50,063 - -1.1
50,138 - BACOVA_03722 0.20 -0.3
50,332 + BACOVA_03722 0.66 -0.1
50,333 - BACOVA_03722 0.66 -0.5
50,394 + BACOVA_03722 0.80 +0.2
50,478 - +1.3
50,515 + +0.6
50,516 - -1.3
50,526 - -0.8
50,570 - -0.2
50,572 + +0.1
50,573 - -0.1
50,573 - -0.5
50,578 + -0.2
50,597 + -0.8
50,616 - -1.2
50,640 + +0.9
50,641 - -1.6
50,683 - -1.1
50,686 + +2.2
50,708 + BACOVA_03723 0.12 -0.8
50,708 + BACOVA_03723 0.12 -1.0
50,711 - BACOVA_03723 0.12 -0.5
50,732 + BACOVA_03723 0.14 -1.8
50,732 + BACOVA_03723 0.14 -0.3
50,733 - BACOVA_03723 0.14 +1.7
50,733 - BACOVA_03723 0.14 -0.3
50,733 - BACOVA_03723 0.14 -0.2
50,739 + BACOVA_03723 0.14 +2.9
50,759 + BACOVA_03723 0.16 +0.2
50,819 + BACOVA_03723 0.21 +3.2
50,819 + BACOVA_03723 0.21 +1.8
50,819 + BACOVA_03723 0.21 +0.4
50,820 - BACOVA_03723 0.21 +0.9
50,828 + BACOVA_03723 0.22 +0.0
50,829 - BACOVA_03723 0.22 +0.9
50,829 - BACOVA_03723 0.22 +3.5
50,829 - BACOVA_03723 0.22 -0.7
50,852 - BACOVA_03723 0.24 +3.2
50,852 - BACOVA_03723 0.24 -0.4
50,861 + BACOVA_03723 0.25 -1.3
50,917 - BACOVA_03723 0.30 -0.2
50,919 + BACOVA_03723 0.30 +0.6
50,964 + BACOVA_03723 0.34 -1.2
50,964 + BACOVA_03723 0.34 -0.1
50,968 + BACOVA_03723 0.35 -1.1
50,973 + BACOVA_03723 0.35 -0.2
50,974 - BACOVA_03723 0.35 -0.5
51,032 + BACOVA_03723 0.40 -1.9
51,033 - BACOVA_03723 0.40 +0.8
51,075 + BACOVA_03723 0.44 -1.1
51,076 - BACOVA_03723 0.44 -0.9
51,093 + BACOVA_03723 0.46 -1.3
51,094 - BACOVA_03723 0.46 -0.5
51,094 - BACOVA_03723 0.46 -0.6
51,094 - BACOVA_03723 0.46 -0.5
51,129 + BACOVA_03723 0.49 -0.4
51,130 - BACOVA_03723 0.49 -0.1
51,158 + BACOVA_03723 0.51 +0.0
51,160 + BACOVA_03723 0.52 -1.8
51,167 + BACOVA_03723 0.52 +0.4
51,201 - BACOVA_03723 0.55 -1.5
51,211 - BACOVA_03723 0.56 +0.6
51,282 - BACOVA_03723 0.62 +0.5
51,282 - BACOVA_03723 0.62 -0.8
51,284 + BACOVA_03723 0.63 -0.6
51,287 + BACOVA_03723 0.63 +0.4
51,288 - BACOVA_03723 0.63 +1.1
51,298 + BACOVA_03723 0.64 -1.6
51,298 + BACOVA_03723 0.64 +0.9
51,298 + BACOVA_03723 0.64 -0.1
51,299 - BACOVA_03723 0.64 -0.4
51,299 - BACOVA_03723 0.64 +0.6
51,299 - BACOVA_03723 0.64 -0.9
51,299 - BACOVA_03723 0.64 -0.3
51,352 - BACOVA_03723 0.69 -0.1
51,352 - BACOVA_03723 0.69 +0.1
51,352 - BACOVA_03723 0.69 -1.9
51,352 - BACOVA_03723 0.69 -0.1
51,359 + BACOVA_03723 0.69 -1.3
51,413 + BACOVA_03723 0.74 -1.9
51,484 + BACOVA_03723 0.80 -0.7
51,504 - BACOVA_03723 0.82 +0.7
51,540 - BACOVA_03723 0.85 -0.7
51,602 + +0.8
51,709 + +0.9
51,710 - +0.9
51,724 + +2.0
51,734 + -0.7
51,734 + +1.2
51,745 + +1.3
51,745 + +0.6
51,768 + +0.6
51,769 - -1.1
51,771 + +0.4
51,772 - -0.2
51,772 - -1.6
51,781 + -0.5
51,812 - -1.7
51,812 - -0.2
51,812 - -0.9
51,831 - -0.5
51,838 + -0.4
51,839 - -0.5
51,850 + -1.4
51,852 + +0.2
51,870 - -0.8
51,902 + BACOVA_03724 0.12 +0.2
51,904 + BACOVA_03724 0.12 +0.4
51,906 + BACOVA_03724 0.12 -0.6
51,907 - BACOVA_03724 0.12 +1.3
51,923 + BACOVA_03724 0.14 -1.4
51,944 + BACOVA_03724 0.16 -1.4
51,944 + BACOVA_03724 0.16 +0.4
51,962 + BACOVA_03724 0.17 -0.4
51,963 - BACOVA_03724 0.17 -1.1
52,043 - BACOVA_03724 0.25 -0.0
52,103 + BACOVA_03724 0.30 -0.9
52,130 + BACOVA_03724 0.33 -1.9
52,176 - BACOVA_03724 0.37 -0.6
52,203 + BACOVA_03724 0.39 +1.2
52,203 + BACOVA_03724 0.39 -2.0
52,203 + BACOVA_03724 0.39 -0.7
52,208 + BACOVA_03724 0.40 +0.2
52,208 + BACOVA_03724 0.40 +0.0
52,208 + BACOVA_03724 0.40 -0.5
52,228 + BACOVA_03724 0.41 -0.2
52,256 + BACOVA_03724 0.44 -1.1
52,259 + BACOVA_03724 0.44 -1.4
52,260 - BACOVA_03724 0.44 +0.2
52,426 + BACOVA_03724 0.59 -0.8
52,456 + BACOVA_03724 0.62 -1.1
52,480 + BACOVA_03724 0.64 -0.5
52,529 + BACOVA_03724 0.69 -0.5
52,529 + BACOVA_03724 0.69 +1.9
52,660 - BACOVA_03724 0.81 +1.2
52,660 - BACOVA_03724 0.81 -0.3

Or see this region's nucleotide sequence