Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03650

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03649 and BACOVA_03650 are separated by 84 nucleotidesBACOVA_03650 and BACOVA_03651 are separated by 40 nucleotides BACOVA_03649: BACOVA_03649 - peptidase M16 inactive domain protein, at 476,025 to 477,263 _03649 BACOVA_03650: BACOVA_03650 - MATE efflux family protein, at 477,348 to 478,706 _03650 BACOVA_03651: BACOVA_03651 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 478,747 to 481,080 _03651 Position (kb) 477 478 479Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 476.374 kb on + strand, within BACOVA_03649at 476.389 kb on + strand, within BACOVA_03649at 476.513 kb on + strand, within BACOVA_03649at 476.525 kb on + strand, within BACOVA_03649at 476.562 kb on + strand, within BACOVA_03649at 476.563 kb on - strand, within BACOVA_03649at 476.570 kb on + strand, within BACOVA_03649at 476.570 kb on + strand, within BACOVA_03649at 476.570 kb on + strand, within BACOVA_03649at 476.579 kb on + strand, within BACOVA_03649at 476.579 kb on + strand, within BACOVA_03649at 476.580 kb on - strand, within BACOVA_03649at 476.584 kb on + strand, within BACOVA_03649at 476.584 kb on + strand, within BACOVA_03649at 476.585 kb on - strand, within BACOVA_03649at 476.722 kb on + strand, within BACOVA_03649at 476.753 kb on + strand, within BACOVA_03649at 476.794 kb on - strand, within BACOVA_03649at 476.794 kb on - strand, within BACOVA_03649at 476.805 kb on - strand, within BACOVA_03649at 476.887 kb on + strand, within BACOVA_03649at 476.887 kb on + strand, within BACOVA_03649at 476.888 kb on - strand, within BACOVA_03649at 476.888 kb on - strand, within BACOVA_03649at 476.896 kb on - strand, within BACOVA_03649at 476.911 kb on + strand, within BACOVA_03649at 476.912 kb on - strand, within BACOVA_03649at 477.238 kb on + strandat 477.239 kb on - strandat 477.241 kb on - strandat 477.244 kb on - strandat 477.245 kb on + strandat 477.279 kb on - strandat 477.283 kb on + strandat 477.284 kb on - strandat 477.324 kb on + strandat 477.325 kb on - strandat 477.357 kb on - strandat 477.360 kb on + strandat 477.360 kb on + strandat 477.360 kb on + strandat 477.361 kb on - strandat 477.361 kb on - strandat 477.362 kb on + strandat 477.362 kb on + strandat 477.365 kb on + strandat 477.365 kb on + strandat 477.369 kb on + strandat 477.369 kb on + strandat 477.369 kb on + strandat 477.370 kb on - strandat 477.370 kb on - strandat 477.372 kb on - strandat 477.382 kb on - strandat 477.383 kb on + strandat 477.384 kb on - strandat 477.384 kb on - strandat 477.384 kb on - strandat 477.428 kb on - strandat 477.460 kb on + strandat 477.476 kb on + strandat 477.476 kb on + strandat 477.476 kb on + strandat 477.477 kb on - strandat 477.585 kb on + strand, within BACOVA_03650at 477.601 kb on - strand, within BACOVA_03650at 477.623 kb on - strand, within BACOVA_03650at 477.675 kb on - strand, within BACOVA_03650at 477.696 kb on - strand, within BACOVA_03650at 477.745 kb on - strand, within BACOVA_03650at 477.769 kb on + strand, within BACOVA_03650at 477.874 kb on + strand, within BACOVA_03650at 477.875 kb on - strand, within BACOVA_03650at 477.882 kb on + strand, within BACOVA_03650at 477.882 kb on + strand, within BACOVA_03650at 477.920 kb on - strand, within BACOVA_03650at 477.976 kb on + strand, within BACOVA_03650at 477.976 kb on + strand, within BACOVA_03650at 477.976 kb on + strand, within BACOVA_03650at 477.977 kb on - strand, within BACOVA_03650at 477.992 kb on + strand, within BACOVA_03650at 478.019 kb on + strand, within BACOVA_03650at 478.019 kb on + strand, within BACOVA_03650at 478.020 kb on - strand, within BACOVA_03650at 478.020 kb on - strand, within BACOVA_03650at 478.129 kb on + strand, within BACOVA_03650at 478.130 kb on - strand, within BACOVA_03650at 478.212 kb on - strand, within BACOVA_03650at 478.218 kb on + strand, within BACOVA_03650at 478.218 kb on + strand, within BACOVA_03650at 478.219 kb on - strand, within BACOVA_03650at 478.222 kb on - strand, within BACOVA_03650at 478.222 kb on - strand, within BACOVA_03650at 478.289 kb on - strand, within BACOVA_03650at 478.426 kb on + strand, within BACOVA_03650at 478.472 kb on + strand, within BACOVA_03650at 478.507 kb on + strand, within BACOVA_03650at 478.598 kb on - strandat 478.600 kb on + strandat 478.600 kb on + strandat 478.600 kb on + strandat 478.601 kb on - strandat 478.714 kb on + strandat 478.895 kb on + strandat 478.896 kb on - strandat 478.896 kb on - strandat 478.949 kb on + strandat 478.949 kb on + strandat 478.950 kb on - strandat 478.950 kb on - strandat 479.036 kb on + strand, within BACOVA_03651at 479.082 kb on + strand, within BACOVA_03651at 479.157 kb on + strand, within BACOVA_03651at 479.158 kb on - strand, within BACOVA_03651at 479.181 kb on + strand, within BACOVA_03651at 479.206 kb on - strand, within BACOVA_03651at 479.287 kb on - strand, within BACOVA_03651at 479.289 kb on + strand, within BACOVA_03651at 479.307 kb on + strand, within BACOVA_03651at 479.308 kb on - strand, within BACOVA_03651at 479.453 kb on + strand, within BACOVA_03651at 479.453 kb on + strand, within BACOVA_03651at 479.490 kb on + strand, within BACOVA_03651

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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476,374 + BACOVA_03649 0.28 -0.5
476,389 + BACOVA_03649 0.29 +0.6
476,513 + BACOVA_03649 0.39 +2.6
476,525 + BACOVA_03649 0.40 +1.7
476,562 + BACOVA_03649 0.43 +1.0
476,563 - BACOVA_03649 0.43 -0.2
476,570 + BACOVA_03649 0.44 +0.5
476,570 + BACOVA_03649 0.44 -0.5
476,570 + BACOVA_03649 0.44 +1.0
476,579 + BACOVA_03649 0.45 -0.4
476,579 + BACOVA_03649 0.45 -1.4
476,580 - BACOVA_03649 0.45 +1.0
476,584 + BACOVA_03649 0.45 +0.7
476,584 + BACOVA_03649 0.45 -1.8
476,585 - BACOVA_03649 0.45 +1.1
476,722 + BACOVA_03649 0.56 +0.2
476,753 + BACOVA_03649 0.59 +1.7
476,794 - BACOVA_03649 0.62 -1.1
476,794 - BACOVA_03649 0.62 +0.4
476,805 - BACOVA_03649 0.63 +1.7
476,887 + BACOVA_03649 0.70 +1.2
476,887 + BACOVA_03649 0.70 +1.8
476,888 - BACOVA_03649 0.70 +0.7
476,888 - BACOVA_03649 0.70 +1.4
476,896 - BACOVA_03649 0.70 +1.7
476,911 + BACOVA_03649 0.72 -1.3
476,912 - BACOVA_03649 0.72 +1.7
477,238 + +2.7
477,239 - +1.9
477,241 - +2.1
477,244 - +1.1
477,245 + -1.5
477,279 - +0.5
477,283 + -0.6
477,284 - +0.1
477,324 + -1.5
477,325 - -0.3
477,357 - +0.4
477,360 + -0.6
477,360 + -1.7
477,360 + +0.0
477,361 - -0.1
477,361 - -1.5
477,362 + -0.3
477,362 + -0.9
477,365 + +1.3
477,365 + -2.9
477,369 + +0.1
477,369 + -0.6
477,369 + -2.9
477,370 - +0.7
477,370 - +1.1
477,372 - +1.5
477,382 - -0.3
477,383 + +0.4
477,384 - -0.1
477,384 - +0.4
477,384 - -0.3
477,428 - -0.6
477,460 + +1.9
477,476 + +0.7
477,476 + +2.1
477,476 + -1.8
477,477 - +0.4
477,585 + BACOVA_03650 0.17 -0.9
477,601 - BACOVA_03650 0.19 +0.4
477,623 - BACOVA_03650 0.20 -0.5
477,675 - BACOVA_03650 0.24 -0.8
477,696 - BACOVA_03650 0.26 -0.4
477,745 - BACOVA_03650 0.29 -1.7
477,769 + BACOVA_03650 0.31 -0.9
477,874 + BACOVA_03650 0.39 +1.1
477,875 - BACOVA_03650 0.39 -1.7
477,882 + BACOVA_03650 0.39 -1.1
477,882 + BACOVA_03650 0.39 +1.0
477,920 - BACOVA_03650 0.42 -1.7
477,976 + BACOVA_03650 0.46 +0.6
477,976 + BACOVA_03650 0.46 -1.1
477,976 + BACOVA_03650 0.46 +0.5
477,977 - BACOVA_03650 0.46 -0.1
477,992 + BACOVA_03650 0.47 -0.5
478,019 + BACOVA_03650 0.49 +0.7
478,019 + BACOVA_03650 0.49 -2.4
478,020 - BACOVA_03650 0.49 +0.2
478,020 - BACOVA_03650 0.49 -0.1
478,129 + BACOVA_03650 0.57 +0.1
478,130 - BACOVA_03650 0.58 -1.6
478,212 - BACOVA_03650 0.64 -1.4
478,218 + BACOVA_03650 0.64 +0.5
478,218 + BACOVA_03650 0.64 -0.2
478,219 - BACOVA_03650 0.64 +0.5
478,222 - BACOVA_03650 0.64 +0.2
478,222 - BACOVA_03650 0.64 +1.0
478,289 - BACOVA_03650 0.69 -0.8
478,426 + BACOVA_03650 0.79 -0.4
478,472 + BACOVA_03650 0.83 -1.4
478,507 + BACOVA_03650 0.85 -0.7
478,598 - +2.7
478,600 + -1.0
478,600 + -1.0
478,600 + -0.4
478,601 - -0.1
478,714 + +0.7
478,895 + -0.3
478,896 - -0.8
478,896 - -0.8
478,949 + -1.0
478,949 + +0.5
478,950 - +0.7
478,950 - +0.1
479,036 + BACOVA_03651 0.12 +2.1
479,082 + BACOVA_03651 0.14 -0.8
479,157 + BACOVA_03651 0.18 -1.1
479,158 - BACOVA_03651 0.18 -0.5
479,181 + BACOVA_03651 0.19 +0.5
479,206 - BACOVA_03651 0.20 +0.2
479,287 - BACOVA_03651 0.23 +0.4
479,289 + BACOVA_03651 0.23 +2.1
479,307 + BACOVA_03651 0.24 +0.2
479,308 - BACOVA_03651 0.24 +3.9
479,453 + BACOVA_03651 0.30 +0.5
479,453 + BACOVA_03651 0.30 -1.4
479,490 + BACOVA_03651 0.32 -2.2

Or see this region's nucleotide sequence