Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03582 and BACOVA_03583 are separated by 13 nucleotides BACOVA_03583 and BACOVA_03584 are separated by 37 nucleotides BACOVA_03584 and BACOVA_03585 are separated by 111 nucleotides
BACOVA_03582: BACOVA_03582 - response regulator receiver domain protein, at 373,337 to 377,716
_03582
BACOVA_03583: BACOVA_03583 - hypothetical protein, at 377,730 to 377,891
_03583
BACOVA_03584: BACOVA_03584 - polygalacturonase (pectinase), at 377,929 to 379,470
_03584
BACOVA_03585: BACOVA_03585 - AMP-binding enzyme, at 379,582 to 381,237
_03585
Position (kb) 377
378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 376.946 kb on + strand, within BACOVA_03582 at 376.953 kb on + strand, within BACOVA_03582 at 376.957 kb on + strand, within BACOVA_03582 at 376.991 kb on + strand, within BACOVA_03582 at 376.993 kb on + strand, within BACOVA_03582 at 377.013 kb on + strand, within BACOVA_03582 at 377.013 kb on + strand, within BACOVA_03582 at 377.014 kb on - strand, within BACOVA_03582 at 377.042 kb on - strand, within BACOVA_03582 at 377.042 kb on - strand, within BACOVA_03582 at 377.046 kb on + strand, within BACOVA_03582 at 377.046 kb on + strand, within BACOVA_03582 at 377.047 kb on - strand, within BACOVA_03582 at 377.048 kb on + strand, within BACOVA_03582 at 377.049 kb on - strand, within BACOVA_03582 at 377.059 kb on + strand, within BACOVA_03582 at 377.060 kb on - strand, within BACOVA_03582 at 377.061 kb on + strand, within BACOVA_03582 at 377.120 kb on + strand, within BACOVA_03582 at 377.128 kb on + strand, within BACOVA_03582 at 377.167 kb on - strand, within BACOVA_03582 at 377.178 kb on - strand, within BACOVA_03582 at 377.192 kb on + strand, within BACOVA_03582 at 377.215 kb on - strand, within BACOVA_03582 at 377.215 kb on - strand, within BACOVA_03582 at 377.216 kb on + strand, within BACOVA_03582 at 377.217 kb on - strand, within BACOVA_03582 at 377.217 kb on - strand, within BACOVA_03582 at 377.293 kb on + strand at 377.293 kb on + strand at 377.313 kb on + strand at 377.314 kb on - strand at 377.317 kb on + strand at 377.317 kb on + strand at 377.318 kb on - strand at 377.318 kb on - strand at 377.432 kb on + strand at 377.432 kb on + strand at 377.432 kb on + strand at 377.433 kb on - strand at 377.433 kb on - strand at 377.434 kb on + strand at 377.459 kb on - strand at 377.526 kb on + strand at 377.594 kb on - strand at 377.601 kb on - strand at 377.682 kb on + strand at 377.682 kb on + strand at 377.682 kb on + strand at 377.684 kb on + strand at 377.685 kb on - strand at 377.703 kb on + strand at 377.703 kb on + strand at 377.704 kb on - strand at 377.720 kb on - strand at 377.722 kb on + strand at 377.723 kb on - strand at 377.724 kb on + strand at 377.725 kb on - strand at 377.729 kb on + strand at 377.747 kb on - strand, within BACOVA_03583 at 377.772 kb on + strand, within BACOVA_03583 at 377.772 kb on + strand, within BACOVA_03583 at 377.772 kb on + strand, within BACOVA_03583 at 377.773 kb on - strand, within BACOVA_03583 at 377.774 kb on + strand, within BACOVA_03583 at 377.816 kb on - strand, within BACOVA_03583 at 377.828 kb on + strand, within BACOVA_03583 at 377.829 kb on - strand, within BACOVA_03583 at 377.829 kb on - strand, within BACOVA_03583 at 377.835 kb on + strand, within BACOVA_03583 at 377.849 kb on - strand, within BACOVA_03583 at 377.849 kb on - strand, within BACOVA_03583 at 377.851 kb on + strand, within BACOVA_03583 at 377.856 kb on + strand, within BACOVA_03583 at 377.857 kb on - strand, within BACOVA_03583 at 377.857 kb on - strand, within BACOVA_03583 at 377.857 kb on - strand, within BACOVA_03583 at 377.857 kb on - strand, within BACOVA_03583 at 377.879 kb on - strand at 377.897 kb on - strand at 377.943 kb on + strand at 377.951 kb on + strand at 377.988 kb on + strand at 377.994 kb on + strand at 377.994 kb on + strand at 377.995 kb on - strand at 377.997 kb on + strand at 378.028 kb on - strand at 378.040 kb on - strand at 378.047 kb on + strand at 378.094 kb on - strand, within BACOVA_03584 at 378.098 kb on - strand, within BACOVA_03584 at 378.116 kb on - strand, within BACOVA_03584 at 378.149 kb on + strand, within BACOVA_03584 at 378.150 kb on - strand, within BACOVA_03584 at 378.157 kb on + strand, within BACOVA_03584 at 378.158 kb on - strand, within BACOVA_03584 at 378.158 kb on - strand, within BACOVA_03584 at 378.205 kb on + strand, within BACOVA_03584 at 378.238 kb on - strand, within BACOVA_03584 at 378.249 kb on + strand, within BACOVA_03584 at 378.269 kb on - strand, within BACOVA_03584 at 378.294 kb on + strand, within BACOVA_03584 at 378.408 kb on - strand, within BACOVA_03584 at 378.455 kb on - strand, within BACOVA_03584 at 378.458 kb on - strand, within BACOVA_03584 at 378.471 kb on - strand, within BACOVA_03584 at 378.516 kb on + strand, within BACOVA_03584 at 378.516 kb on + strand, within BACOVA_03584 at 378.516 kb on + strand, within BACOVA_03584 at 378.517 kb on - strand, within BACOVA_03584 at 378.517 kb on - strand, within BACOVA_03584 at 378.593 kb on + strand, within BACOVA_03584 at 378.593 kb on + strand, within BACOVA_03584 at 378.593 kb on + strand, within BACOVA_03584 at 378.594 kb on - strand, within BACOVA_03584 at 378.594 kb on - strand, within BACOVA_03584 at 378.614 kb on + strand, within BACOVA_03584 at 378.615 kb on - strand, within BACOVA_03584 at 378.616 kb on + strand, within BACOVA_03584 at 378.617 kb on - strand, within BACOVA_03584 at 378.617 kb on - strand, within BACOVA_03584 at 378.617 kb on - strand, within BACOVA_03584 at 378.617 kb on - strand, within BACOVA_03584 at 378.619 kb on - strand, within BACOVA_03584 at 378.649 kb on - strand, within BACOVA_03584 at 378.659 kb on + strand, within BACOVA_03584 at 378.723 kb on + strand, within BACOVA_03584 at 378.723 kb on + strand, within BACOVA_03584 at 378.727 kb on - strand, within BACOVA_03584 at 378.727 kb on - strand, within BACOVA_03584 at 378.763 kb on + strand, within BACOVA_03584 at 378.764 kb on - strand, within BACOVA_03584 at 378.784 kb on - strand, within BACOVA_03584 at 378.784 kb on - strand, within BACOVA_03584 at 378.791 kb on + strand, within BACOVA_03584 at 378.792 kb on - strand, within BACOVA_03584 at 378.792 kb on - strand, within BACOVA_03584 at 378.795 kb on + strand, within BACOVA_03584 at 378.804 kb on + strand, within BACOVA_03584 at 378.805 kb on - strand, within BACOVA_03584 at 378.831 kb on + strand, within BACOVA_03584 at 378.857 kb on + strand, within BACOVA_03584 at 378.877 kb on - strand, within BACOVA_03584 at 378.963 kb on + strand, within BACOVA_03584 at 378.963 kb on + strand, within BACOVA_03584 at 378.963 kb on + strand, within BACOVA_03584 at 378.964 kb on - strand, within BACOVA_03584 at 378.964 kb on - strand, within BACOVA_03584 at 378.966 kb on + strand, within BACOVA_03584 at 378.968 kb on + strand, within BACOVA_03584 at 379.103 kb on - strand, within BACOVA_03584 at 379.118 kb on - strand, within BACOVA_03584 at 379.119 kb on + strand, within BACOVA_03584 at 379.168 kb on - strand, within BACOVA_03584 at 379.173 kb on + strand, within BACOVA_03584 at 379.174 kb on - strand, within BACOVA_03584 at 379.174 kb on - strand, within BACOVA_03584 at 379.278 kb on + strand, within BACOVA_03584 at 379.278 kb on + strand, within BACOVA_03584 at 379.279 kb on - strand, within BACOVA_03584 at 379.297 kb on - strand, within BACOVA_03584 at 379.303 kb on - strand, within BACOVA_03584 at 379.320 kb on - strand at 379.338 kb on + strand at 379.362 kb on + strand at 379.362 kb on + strand at 379.363 kb on - strand at 379.365 kb on + strand at 379.366 kb on - strand at 379.371 kb on + strand at 379.405 kb on + strand at 379.414 kb on - strand at 379.414 kb on - strand at 379.414 kb on - strand at 379.425 kb on + strand at 379.425 kb on + strand at 379.426 kb on - strand at 379.429 kb on - strand at 379.488 kb on - strand at 379.488 kb on - strand at 379.513 kb on + strand at 379.534 kb on + strand at 379.545 kb on + strand at 379.546 kb on - strand at 379.549 kb on - strand at 379.566 kb on + strand at 379.639 kb on - strand at 379.679 kb on + strand at 379.747 kb on - strand at 379.759 kb on + strand, within BACOVA_03585 at 379.759 kb on + strand, within BACOVA_03585 at 379.770 kb on + strand, within BACOVA_03585 at 379.777 kb on + strand, within BACOVA_03585 at 379.778 kb on - strand, within BACOVA_03585 at 379.778 kb on - strand, within BACOVA_03585 at 379.781 kb on - strand, within BACOVA_03585 at 379.965 kb on - strand, within BACOVA_03585 at 379.972 kb on - strand, within BACOVA_03585 at 379.995 kb on + strand, within BACOVA_03585 at 379.995 kb on + strand, within BACOVA_03585 at 379.995 kb on + strand, within BACOVA_03585 at 380.015 kb on + strand, within BACOVA_03585 at 380.016 kb on - strand, within BACOVA_03585 at 380.040 kb on + strand, within BACOVA_03585 at 380.123 kb on + strand, within BACOVA_03585 at 380.123 kb on + strand, within BACOVA_03585 at 380.123 kb on + strand, within BACOVA_03585 at 380.258 kb on - strand, within BACOVA_03585 at 380.294 kb on + strand, within BACOVA_03585 at 380.298 kb on + strand, within BACOVA_03585 at 380.385 kb on - strand, within BACOVA_03585 at 380.385 kb on - strand, within BACOVA_03585 at 380.406 kb on + strand, within BACOVA_03585 at 380.435 kb on + strand, within BACOVA_03585 at 380.436 kb on - strand, within BACOVA_03585 at 380.446 kb on - strand, within BACOVA_03585 at 380.446 kb on - strand, within BACOVA_03585
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 376,946 + BACOVA_03582 0.82 -0.0 376,953 + BACOVA_03582 0.83 -1.5 376,957 + BACOVA_03582 0.83 -0.5 376,991 + BACOVA_03582 0.83 +0.4 376,993 + BACOVA_03582 0.83 -1.0 377,013 + BACOVA_03582 0.84 -0.7 377,013 + BACOVA_03582 0.84 +2.6 377,014 - BACOVA_03582 0.84 +1.8 377,042 - BACOVA_03582 0.85 +1.9 377,042 - BACOVA_03582 0.85 -2.0 377,046 + BACOVA_03582 0.85 +0.1 377,046 + BACOVA_03582 0.85 +2.1 377,047 - BACOVA_03582 0.85 -0.4 377,048 + BACOVA_03582 0.85 +0.4 377,049 - BACOVA_03582 0.85 -1.2 377,059 + BACOVA_03582 0.85 -2.3 377,060 - BACOVA_03582 0.85 -1.5 377,061 + BACOVA_03582 0.85 +0.8 377,120 + BACOVA_03582 0.86 -0.7 377,128 + BACOVA_03582 0.87 -0.2 377,167 - BACOVA_03582 0.87 -0.3 377,178 - BACOVA_03582 0.88 -0.4 377,192 + BACOVA_03582 0.88 -0.7 377,215 - BACOVA_03582 0.89 -2.4 377,215 - BACOVA_03582 0.89 +0.7 377,216 + BACOVA_03582 0.89 -0.9 377,217 - BACOVA_03582 0.89 -0.3 377,217 - BACOVA_03582 0.89 +1.6 377,293 + -1.5 377,293 + +1.5 377,313 + -0.3 377,314 - +0.5 377,317 + -0.8 377,317 + -0.1 377,318 - +2.0 377,318 - -0.0 377,432 + -0.8 377,432 + -1.1 377,432 + -0.2 377,433 - +1.4 377,433 - -0.0 377,434 + +1.0 377,459 - +2.2 377,526 + -1.9 377,594 - +0.0 377,601 - -0.5 377,682 + -1.0 377,682 + -0.9 377,682 + +0.7 377,684 + -0.7 377,685 - +1.0 377,703 + +0.4 377,703 + +2.4 377,704 - +0.2 377,720 - -0.5 377,722 + -0.5 377,723 - +3.2 377,724 + +0.2 377,725 - +0.5 377,729 + -1.6 377,747 - BACOVA_03583 0.10 -0.2 377,772 + BACOVA_03583 0.26 -3.1 377,772 + BACOVA_03583 0.26 +0.6 377,772 + BACOVA_03583 0.26 +1.2 377,773 - BACOVA_03583 0.27 -0.5 377,774 + BACOVA_03583 0.27 -0.0 377,816 - BACOVA_03583 0.53 -1.8 377,828 + BACOVA_03583 0.60 +1.2 377,829 - BACOVA_03583 0.61 -0.9 377,829 - BACOVA_03583 0.61 -0.8 377,835 + BACOVA_03583 0.65 +0.7 377,849 - BACOVA_03583 0.73 -1.6 377,849 - BACOVA_03583 0.73 -0.0 377,851 + BACOVA_03583 0.75 -1.0 377,856 + BACOVA_03583 0.78 +0.1 377,857 - BACOVA_03583 0.78 -0.1 377,857 - BACOVA_03583 0.78 -0.9 377,857 - BACOVA_03583 0.78 -0.9 377,857 - BACOVA_03583 0.78 -1.3 377,879 - +0.2 377,897 - -0.1 377,943 + -0.5 377,951 + -0.3 377,988 + -0.9 377,994 + -0.9 377,994 + -0.6 377,995 - -1.4 377,997 + +0.1 378,028 - +2.2 378,040 - -0.5 378,047 + -1.4 378,094 - BACOVA_03584 0.11 +0.2 378,098 - BACOVA_03584 0.11 +1.4 378,116 - BACOVA_03584 0.12 +0.1 378,149 + BACOVA_03584 0.14 +1.6 378,150 - BACOVA_03584 0.14 +1.6 378,157 + BACOVA_03584 0.15 -0.6 378,158 - BACOVA_03584 0.15 -0.0 378,158 - BACOVA_03584 0.15 -1.4 378,205 + BACOVA_03584 0.18 -0.6 378,238 - BACOVA_03584 0.20 +3.1 378,249 + BACOVA_03584 0.21 -2.2 378,269 - BACOVA_03584 0.22 +0.1 378,294 + BACOVA_03584 0.24 -0.0 378,408 - BACOVA_03584 0.31 +0.9 378,455 - BACOVA_03584 0.34 -1.1 378,458 - BACOVA_03584 0.34 -0.1 378,471 - BACOVA_03584 0.35 +1.8 378,516 + BACOVA_03584 0.38 +2.0 378,516 + BACOVA_03584 0.38 -0.1 378,516 + BACOVA_03584 0.38 +0.2 378,517 - BACOVA_03584 0.38 -1.8 378,517 - BACOVA_03584 0.38 -0.0 378,593 + BACOVA_03584 0.43 -0.1 378,593 + BACOVA_03584 0.43 +0.8 378,593 + BACOVA_03584 0.43 +0.0 378,594 - BACOVA_03584 0.43 -1.2 378,594 - BACOVA_03584 0.43 -0.4 378,614 + BACOVA_03584 0.44 +0.8 378,615 - BACOVA_03584 0.44 -0.4 378,616 + BACOVA_03584 0.45 -0.5 378,617 - BACOVA_03584 0.45 +0.9 378,617 - BACOVA_03584 0.45 -0.3 378,617 - BACOVA_03584 0.45 -1.1 378,617 - BACOVA_03584 0.45 -1.8 378,619 - BACOVA_03584 0.45 -2.3 378,649 - BACOVA_03584 0.47 -0.9 378,659 + BACOVA_03584 0.47 -0.2 378,723 + BACOVA_03584 0.51 +0.8 378,723 + BACOVA_03584 0.51 -0.9 378,727 - BACOVA_03584 0.52 +0.4 378,727 - BACOVA_03584 0.52 +0.1 378,763 + BACOVA_03584 0.54 -0.7 378,764 - BACOVA_03584 0.54 +1.1 378,784 - BACOVA_03584 0.55 -0.6 378,784 - BACOVA_03584 0.55 +0.6 378,791 + BACOVA_03584 0.56 -0.2 378,792 - BACOVA_03584 0.56 +0.9 378,792 - BACOVA_03584 0.56 -0.0 378,795 + BACOVA_03584 0.56 -1.3 378,804 + BACOVA_03584 0.57 +0.8 378,805 - BACOVA_03584 0.57 -1.3 378,831 + BACOVA_03584 0.58 -0.9 378,857 + BACOVA_03584 0.60 +0.5 378,877 - BACOVA_03584 0.61 +1.4 378,963 + BACOVA_03584 0.67 +2.5 378,963 + BACOVA_03584 0.67 +2.1 378,963 + BACOVA_03584 0.67 -1.1 378,964 - BACOVA_03584 0.67 -0.2 378,964 - BACOVA_03584 0.67 -1.5 378,966 + BACOVA_03584 0.67 -1.3 378,968 + BACOVA_03584 0.67 -1.3 379,103 - BACOVA_03584 0.76 +2.0 379,118 - BACOVA_03584 0.77 -0.8 379,119 + BACOVA_03584 0.77 -0.1 379,168 - BACOVA_03584 0.80 +2.4 379,173 + BACOVA_03584 0.81 +0.2 379,174 - BACOVA_03584 0.81 -0.6 379,174 - BACOVA_03584 0.81 -2.6 379,278 + BACOVA_03584 0.87 -0.8 379,278 + BACOVA_03584 0.87 -0.3 379,279 - BACOVA_03584 0.88 -1.0 379,297 - BACOVA_03584 0.89 +0.2 379,303 - BACOVA_03584 0.89 -0.3 379,320 - +3.6 379,338 + +1.1 379,362 + -0.0 379,362 + -1.8 379,363 - -0.1 379,365 + +1.0 379,366 - -0.3 379,371 + +1.5 379,405 + -0.9 379,414 - -0.1 379,414 - -1.6 379,414 - +1.0 379,425 + -0.5 379,425 + -1.6 379,426 - +0.9 379,429 - -1.9 379,488 - -0.1 379,488 - -0.9 379,513 + -1.7 379,534 + +0.5 379,545 + -0.3 379,546 - +1.6 379,549 - -1.4 379,566 + -0.1 379,639 - -1.2 379,679 + +2.8 379,747 - +2.8 379,759 + BACOVA_03585 0.11 -0.7 379,759 + BACOVA_03585 0.11 +1.0 379,770 + BACOVA_03585 0.11 +0.4 379,777 + BACOVA_03585 0.12 -1.8 379,778 - BACOVA_03585 0.12 +0.4 379,778 - BACOVA_03585 0.12 +0.0 379,781 - BACOVA_03585 0.12 -0.1 379,965 - BACOVA_03585 0.23 -0.2 379,972 - BACOVA_03585 0.24 +3.8 379,995 + BACOVA_03585 0.25 -0.0 379,995 + BACOVA_03585 0.25 -0.8 379,995 + BACOVA_03585 0.25 -0.5 380,015 + BACOVA_03585 0.26 +0.6 380,016 - BACOVA_03585 0.26 +2.3 380,040 + BACOVA_03585 0.28 +0.3 380,123 + BACOVA_03585 0.33 -0.1 380,123 + BACOVA_03585 0.33 -0.1 380,123 + BACOVA_03585 0.33 -0.2 380,258 - BACOVA_03585 0.41 -0.1 380,294 + BACOVA_03585 0.43 -0.1 380,298 + BACOVA_03585 0.43 -0.2 380,385 - BACOVA_03585 0.48 +0.3 380,385 - BACOVA_03585 0.48 +0.2 380,406 + BACOVA_03585 0.50 +2.1 380,435 + BACOVA_03585 0.52 +1.6 380,436 - BACOVA_03585 0.52 -1.5 380,446 - BACOVA_03585 0.52 -0.1 380,446 - BACOVA_03585 0.52 -1.0
Or see this region's nucleotide sequence