Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03502 and BACOVA_03503 are separated by 144 nucleotides BACOVA_03503 and BACOVA_03504 are separated by 33 nucleotides
BACOVA_03502: BACOVA_03502 - glycosyl hydrolase family 20, catalytic domain protein, at 259,976 to 261,991
_03502
BACOVA_03503: BACOVA_03503 - DNA repair protein RadC, at 262,136 to 262,831
_03503
BACOVA_03504: BACOVA_03504 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 262,865 to 266,800
_03504
Position (kb) 262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 261.166 kb on + strand, within BACOVA_03502 at 261.166 kb on + strand, within BACOVA_03502 at 261.167 kb on - strand, within BACOVA_03502 at 261.171 kb on + strand, within BACOVA_03502 at 261.172 kb on - strand, within BACOVA_03502 at 261.254 kb on - strand, within BACOVA_03502 at 261.310 kb on - strand, within BACOVA_03502 at 261.310 kb on - strand, within BACOVA_03502 at 261.370 kb on - strand, within BACOVA_03502 at 261.412 kb on + strand, within BACOVA_03502 at 261.425 kb on + strand, within BACOVA_03502 at 261.447 kb on + strand, within BACOVA_03502 at 261.465 kb on - strand, within BACOVA_03502 at 261.480 kb on + strand, within BACOVA_03502 at 261.534 kb on + strand, within BACOVA_03502 at 261.535 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.650 kb on + strand, within BACOVA_03502 at 261.650 kb on + strand, within BACOVA_03502 at 261.651 kb on - strand, within BACOVA_03502 at 261.675 kb on + strand, within BACOVA_03502 at 261.720 kb on + strand, within BACOVA_03502 at 261.721 kb on - strand, within BACOVA_03502 at 261.725 kb on - strand, within BACOVA_03502 at 261.725 kb on - strand, within BACOVA_03502 at 261.759 kb on + strand, within BACOVA_03502 at 261.776 kb on - strand, within BACOVA_03502 at 261.863 kb on + strand at 261.899 kb on + strand at 261.900 kb on - strand at 261.900 kb on - strand at 261.900 kb on - strand at 261.936 kb on + strand at 261.936 kb on + strand at 261.938 kb on + strand at 261.938 kb on + strand at 261.950 kb on + strand at 261.954 kb on - strand at 261.956 kb on + strand at 261.956 kb on + strand at 261.956 kb on + strand at 261.957 kb on - strand at 261.960 kb on - strand at 261.960 kb on - strand at 261.960 kb on - strand at 261.968 kb on + strand at 261.999 kb on - strand at 262.007 kb on - strand at 262.007 kb on - strand at 262.008 kb on + strand at 262.009 kb on - strand at 262.023 kb on - strand at 262.049 kb on - strand at 262.060 kb on - strand at 262.071 kb on + strand at 262.072 kb on - strand at 262.072 kb on - strand at 262.073 kb on + strand at 262.073 kb on + strand at 262.074 kb on - strand at 262.074 kb on - strand at 262.074 kb on - strand at 262.100 kb on - strand at 262.100 kb on - strand at 262.101 kb on + strand at 262.101 kb on + strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.109 kb on + strand at 262.122 kb on + strand at 262.240 kb on - strand, within BACOVA_03503 at 262.247 kb on - strand, within BACOVA_03503 at 262.318 kb on + strand, within BACOVA_03503 at 262.319 kb on - strand, within BACOVA_03503 at 262.358 kb on + strand, within BACOVA_03503 at 262.358 kb on + strand, within BACOVA_03503 at 262.376 kb on - strand, within BACOVA_03503 at 262.396 kb on + strand, within BACOVA_03503 at 262.396 kb on + strand, within BACOVA_03503 at 262.397 kb on - strand, within BACOVA_03503 at 262.420 kb on - strand, within BACOVA_03503 at 262.480 kb on + strand, within BACOVA_03503 at 262.481 kb on - strand, within BACOVA_03503 at 262.481 kb on - strand, within BACOVA_03503 at 262.484 kb on + strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.543 kb on - strand, within BACOVA_03503 at 262.575 kb on + strand, within BACOVA_03503 at 262.575 kb on + strand, within BACOVA_03503 at 262.576 kb on - strand, within BACOVA_03503 at 262.579 kb on + strand, within BACOVA_03503 at 262.579 kb on + strand, within BACOVA_03503 at 262.581 kb on + strand, within BACOVA_03503 at 262.581 kb on + strand, within BACOVA_03503 at 262.582 kb on - strand, within BACOVA_03503 at 262.585 kb on + strand, within BACOVA_03503 at 262.610 kb on - strand, within BACOVA_03503 at 262.693 kb on + strand, within BACOVA_03503 at 262.732 kb on + strand, within BACOVA_03503 at 262.733 kb on - strand, within BACOVA_03503 at 262.829 kb on + strand at 262.833 kb on + strand at 262.834 kb on - strand at 262.834 kb on - strand at 262.836 kb on + strand at 262.836 kb on + strand at 262.839 kb on + strand at 262.840 kb on - strand at 262.840 kb on - strand at 262.861 kb on + strand at 262.870 kb on + strand at 262.921 kb on - strand at 262.936 kb on + strand at 262.949 kb on + strand at 262.949 kb on + strand at 262.949 kb on + strand at 262.950 kb on - strand at 262.965 kb on - strand at 263.007 kb on - strand at 263.044 kb on + strand at 263.045 kb on - strand at 263.046 kb on + strand at 263.072 kb on - strand at 263.125 kb on + strand at 263.135 kb on - strand at 263.138 kb on + strand at 263.139 kb on - strand at 263.215 kb on + strand at 263.216 kb on - strand at 263.243 kb on + strand at 263.243 kb on + strand at 263.243 kb on + strand at 263.244 kb on - strand at 263.244 kb on - strand at 263.253 kb on + strand at 263.281 kb on - strand, within BACOVA_03504 at 263.295 kb on - strand, within BACOVA_03504 at 263.302 kb on + strand, within BACOVA_03504 at 263.315 kb on + strand, within BACOVA_03504 at 263.357 kb on - strand, within BACOVA_03504 at 263.414 kb on - strand, within BACOVA_03504 at 263.438 kb on + strand, within BACOVA_03504 at 263.457 kb on + strand, within BACOVA_03504 at 263.492 kb on + strand, within BACOVA_03504 at 263.492 kb on + strand, within BACOVA_03504 at 263.493 kb on - strand, within BACOVA_03504 at 263.493 kb on - strand, within BACOVA_03504 at 263.493 kb on - strand, within BACOVA_03504 at 263.493 kb on - strand, within BACOVA_03504 at 263.495 kb on - strand, within BACOVA_03504 at 263.549 kb on + strand, within BACOVA_03504 at 263.549 kb on + strand, within BACOVA_03504 at 263.549 kb on + strand, within BACOVA_03504 at 263.553 kb on + strand, within BACOVA_03504 at 263.553 kb on + strand, within BACOVA_03504 at 263.553 kb on + strand, within BACOVA_03504 at 263.554 kb on - strand, within BACOVA_03504 at 263.554 kb on - strand, within BACOVA_03504 at 263.606 kb on - strand, within BACOVA_03504 at 263.634 kb on + strand, within BACOVA_03504 at 263.684 kb on + strand, within BACOVA_03504 at 263.685 kb on - strand, within BACOVA_03504 at 263.685 kb on - strand, within BACOVA_03504 at 263.818 kb on + strand, within BACOVA_03504
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 261,166 + BACOVA_03502 0.59 -0.8 261,166 + BACOVA_03502 0.59 -1.8 261,167 - BACOVA_03502 0.59 -1.6 261,171 + BACOVA_03502 0.59 +0.1 261,172 - BACOVA_03502 0.59 +0.6 261,254 - BACOVA_03502 0.63 +0.5 261,310 - BACOVA_03502 0.66 -0.2 261,310 - BACOVA_03502 0.66 +2.2 261,370 - BACOVA_03502 0.69 +0.3 261,412 + BACOVA_03502 0.71 +0.8 261,425 + BACOVA_03502 0.72 -1.1 261,447 + BACOVA_03502 0.73 +0.5 261,465 - BACOVA_03502 0.74 +1.7 261,480 + BACOVA_03502 0.75 +1.0 261,534 + BACOVA_03502 0.77 +0.1 261,535 - BACOVA_03502 0.77 +0.1 261,621 - BACOVA_03502 0.82 +0.4 261,621 - BACOVA_03502 0.82 +2.2 261,621 - BACOVA_03502 0.82 -0.4 261,650 + BACOVA_03502 0.83 -0.3 261,650 + BACOVA_03502 0.83 -0.7 261,651 - BACOVA_03502 0.83 +0.4 261,675 + BACOVA_03502 0.84 -1.3 261,720 + BACOVA_03502 0.87 -2.0 261,721 - BACOVA_03502 0.87 -0.3 261,725 - BACOVA_03502 0.87 +2.8 261,725 - BACOVA_03502 0.87 -0.1 261,759 + BACOVA_03502 0.88 -0.6 261,776 - BACOVA_03502 0.89 -1.0 261,863 + -0.8 261,899 + +0.4 261,900 - -1.1 261,900 - -0.6 261,900 - +0.6 261,936 + +0.0 261,936 + -1.2 261,938 + +0.6 261,938 + +0.7 261,950 + -1.0 261,954 - -0.8 261,956 + -1.6 261,956 + +0.7 261,956 + -1.1 261,957 - -1.8 261,960 - -0.1 261,960 - -0.2 261,960 - -0.8 261,968 + +2.3 261,999 - +2.8 262,007 - +1.8 262,007 - +1.9 262,008 + -0.1 262,009 - -0.6 262,023 - -0.1 262,049 - +2.0 262,060 - +1.7 262,071 + +0.7 262,072 - +1.3 262,072 - +0.9 262,073 + -0.6 262,073 + -0.2 262,074 - -0.6 262,074 - -0.4 262,074 - -1.1 262,100 - -0.1 262,100 - -0.5 262,101 + -0.5 262,101 + +1.3 262,104 - -0.5 262,104 - -0.3 262,104 - -3.4 262,104 - -1.3 262,104 - -1.3 262,104 - +1.0 262,109 + -1.0 262,122 + +0.8 262,240 - BACOVA_03503 0.15 -1.0 262,247 - BACOVA_03503 0.16 -0.2 262,318 + BACOVA_03503 0.26 +0.4 262,319 - BACOVA_03503 0.26 -1.8 262,358 + BACOVA_03503 0.32 +0.5 262,358 + BACOVA_03503 0.32 -0.2 262,376 - BACOVA_03503 0.34 -1.1 262,396 + BACOVA_03503 0.37 -0.9 262,396 + BACOVA_03503 0.37 -0.8 262,397 - BACOVA_03503 0.38 -1.2 262,420 - BACOVA_03503 0.41 -0.5 262,480 + BACOVA_03503 0.49 -1.7 262,481 - BACOVA_03503 0.50 -0.2 262,481 - BACOVA_03503 0.50 +0.3 262,484 + BACOVA_03503 0.50 -0.8 262,485 - BACOVA_03503 0.50 -1.9 262,485 - BACOVA_03503 0.50 +0.7 262,485 - BACOVA_03503 0.50 -1.1 262,485 - BACOVA_03503 0.50 +0.4 262,543 - BACOVA_03503 0.58 -0.3 262,575 + BACOVA_03503 0.63 +0.2 262,575 + BACOVA_03503 0.63 -0.2 262,576 - BACOVA_03503 0.63 +1.2 262,579 + BACOVA_03503 0.64 -1.7 262,579 + BACOVA_03503 0.64 -0.4 262,581 + BACOVA_03503 0.64 -0.7 262,581 + BACOVA_03503 0.64 +0.4 262,582 - BACOVA_03503 0.64 -1.8 262,585 + BACOVA_03503 0.65 -1.9 262,610 - BACOVA_03503 0.68 -0.3 262,693 + BACOVA_03503 0.80 -0.6 262,732 + BACOVA_03503 0.86 +2.3 262,733 - BACOVA_03503 0.86 -0.3 262,829 + +0.7 262,833 + +0.8 262,834 - -0.2 262,834 - -0.3 262,836 + -0.6 262,836 + +1.5 262,839 + +0.2 262,840 - -0.1 262,840 - -2.0 262,861 + -0.6 262,870 + +1.4 262,921 - -0.9 262,936 + +0.5 262,949 + -1.4 262,949 + +0.7 262,949 + +0.2 262,950 - -0.1 262,965 - +0.6 263,007 - -1.1 263,044 + -1.4 263,045 - -0.0 263,046 + +1.4 263,072 - +2.7 263,125 + +0.9 263,135 - -1.3 263,138 + +0.1 263,139 - -1.1 263,215 + -0.3 263,216 - +0.6 263,243 + +0.4 263,243 + +0.4 263,243 + -0.3 263,244 - +2.2 263,244 - -1.3 263,253 + +2.2 263,281 - BACOVA_03504 0.11 +2.7 263,295 - BACOVA_03504 0.11 +0.9 263,302 + BACOVA_03504 0.11 +0.1 263,315 + BACOVA_03504 0.11 +0.3 263,357 - BACOVA_03504 0.12 -1.0 263,414 - BACOVA_03504 0.14 -0.6 263,438 + BACOVA_03504 0.15 +1.2 263,457 + BACOVA_03504 0.15 +2.1 263,492 + BACOVA_03504 0.16 +0.5 263,492 + BACOVA_03504 0.16 -1.3 263,493 - BACOVA_03504 0.16 -0.7 263,493 - BACOVA_03504 0.16 -0.3 263,493 - BACOVA_03504 0.16 -0.9 263,493 - BACOVA_03504 0.16 +2.2 263,495 - BACOVA_03504 0.16 -1.4 263,549 + BACOVA_03504 0.17 -1.5 263,549 + BACOVA_03504 0.17 -1.3 263,549 + BACOVA_03504 0.17 -2.7 263,553 + BACOVA_03504 0.17 -0.1 263,553 + BACOVA_03504 0.17 -1.0 263,553 + BACOVA_03504 0.17 +0.8 263,554 - BACOVA_03504 0.18 -0.2 263,554 - BACOVA_03504 0.18 +0.0 263,606 - BACOVA_03504 0.19 -0.1 263,634 + BACOVA_03504 0.20 -0.1 263,684 + BACOVA_03504 0.21 +1.4 263,685 - BACOVA_03504 0.21 -0.7 263,685 - BACOVA_03504 0.21 +1.4 263,818 + BACOVA_03504 0.24 -0.7
Or see this region's nucleotide sequence