Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03149 and BACOVA_03150 are separated by 54 nucleotides BACOVA_03150 and BACOVA_03151 are separated by 36 nucleotides BACOVA_03151 and BACOVA_03152 are separated by 56 nucleotides
BACOVA_03149: BACOVA_03149 - hypothetical protein, at 238,008 to 238,340
_03149
BACOVA_03150: BACOVA_03150 - leucine Rich Repeat protein, at 238,395 to 239,135
_03150
BACOVA_03151: BACOVA_03151 - peptidase, M28 family, at 239,172 to 240,173
_03151
BACOVA_03152: BACOVA_03152 - acetyltransferase, GNAT family, at 240,230 to 240,979
_03152
Position (kb) 239
240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 238.196 kb on - strand, within BACOVA_03149 at 238.219 kb on + strand, within BACOVA_03149 at 238.219 kb on + strand, within BACOVA_03149 at 238.220 kb on - strand, within BACOVA_03149 at 238.250 kb on - strand, within BACOVA_03149 at 238.282 kb on + strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.285 kb on - strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.299 kb on - strand, within BACOVA_03149 at 238.306 kb on + strand, within BACOVA_03149 at 238.307 kb on - strand at 238.308 kb on + strand at 238.309 kb on - strand at 238.309 kb on - strand at 238.338 kb on + strand at 238.338 kb on + strand at 238.339 kb on - strand at 238.344 kb on - strand at 238.349 kb on + strand at 238.351 kb on + strand at 238.351 kb on + strand at 238.351 kb on + strand at 238.352 kb on - strand at 238.383 kb on + strand at 238.457 kb on + strand at 238.469 kb on + strand, within BACOVA_03150 at 238.469 kb on + strand, within BACOVA_03150 at 238.469 kb on + strand, within BACOVA_03150 at 238.485 kb on - strand, within BACOVA_03150 at 238.547 kb on + strand, within BACOVA_03150 at 238.548 kb on - strand, within BACOVA_03150 at 238.549 kb on + strand, within BACOVA_03150 at 238.582 kb on + strand, within BACOVA_03150 at 238.617 kb on + strand, within BACOVA_03150 at 238.626 kb on + strand, within BACOVA_03150 at 238.627 kb on - strand, within BACOVA_03150 at 238.628 kb on + strand, within BACOVA_03150 at 238.677 kb on - strand, within BACOVA_03150 at 238.691 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.700 kb on - strand, within BACOVA_03150 at 238.744 kb on + strand, within BACOVA_03150 at 238.744 kb on + strand, within BACOVA_03150 at 238.781 kb on + strand, within BACOVA_03150 at 238.782 kb on - strand, within BACOVA_03150 at 238.783 kb on + strand, within BACOVA_03150 at 238.813 kb on + strand, within BACOVA_03150 at 238.824 kb on + strand, within BACOVA_03150 at 238.825 kb on - strand, within BACOVA_03150 at 238.862 kb on + strand, within BACOVA_03150 at 238.863 kb on - strand, within BACOVA_03150 at 238.865 kb on + strand, within BACOVA_03150 at 238.866 kb on - strand, within BACOVA_03150 at 238.889 kb on + strand, within BACOVA_03150 at 238.890 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.930 kb on + strand, within BACOVA_03150 at 238.931 kb on - strand, within BACOVA_03150 at 238.941 kb on + strand, within BACOVA_03150 at 238.980 kb on - strand, within BACOVA_03150 at 238.980 kb on - strand, within BACOVA_03150 at 239.060 kb on + strand, within BACOVA_03150 at 239.066 kb on + strand at 239.066 kb on + strand at 239.087 kb on + strand at 239.139 kb on - strand at 239.155 kb on + strand at 239.155 kb on + strand at 239.162 kb on + strand at 239.162 kb on + strand at 239.166 kb on + strand at 239.166 kb on + strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.224 kb on + strand at 239.262 kb on - strand at 239.285 kb on + strand, within BACOVA_03151 at 239.288 kb on + strand, within BACOVA_03151 at 239.361 kb on + strand, within BACOVA_03151 at 239.362 kb on - strand, within BACOVA_03151 at 239.362 kb on - strand, within BACOVA_03151 at 239.363 kb on + strand, within BACOVA_03151 at 239.364 kb on - strand, within BACOVA_03151 at 239.378 kb on - strand, within BACOVA_03151 at 239.392 kb on + strand, within BACOVA_03151 at 239.392 kb on + strand, within BACOVA_03151 at 239.412 kb on + strand, within BACOVA_03151 at 239.433 kb on + strand, within BACOVA_03151 at 239.434 kb on - strand, within BACOVA_03151 at 239.485 kb on + strand, within BACOVA_03151 at 239.490 kb on - strand, within BACOVA_03151 at 239.558 kb on + strand, within BACOVA_03151 at 239.568 kb on + strand, within BACOVA_03151 at 239.568 kb on + strand, within BACOVA_03151 at 239.599 kb on + strand, within BACOVA_03151 at 239.600 kb on - strand, within BACOVA_03151 at 239.632 kb on + strand, within BACOVA_03151 at 239.632 kb on + strand, within BACOVA_03151 at 239.632 kb on + strand, within BACOVA_03151 at 239.633 kb on - strand, within BACOVA_03151 at 239.634 kb on + strand, within BACOVA_03151 at 239.684 kb on - strand, within BACOVA_03151 at 239.775 kb on - strand, within BACOVA_03151 at 239.803 kb on + strand, within BACOVA_03151 at 239.846 kb on + strand, within BACOVA_03151 at 239.886 kb on + strand, within BACOVA_03151 at 240.024 kb on - strand, within BACOVA_03151 at 240.040 kb on - strand, within BACOVA_03151 at 240.044 kb on + strand, within BACOVA_03151 at 240.045 kb on - strand, within BACOVA_03151 at 240.045 kb on - strand, within BACOVA_03151 at 240.113 kb on - strand at 240.122 kb on + strand at 240.263 kb on - strand at 240.298 kb on - strand at 240.302 kb on + strand at 240.353 kb on - strand, within BACOVA_03152 at 240.357 kb on - strand, within BACOVA_03152 at 240.365 kb on - strand, within BACOVA_03152 at 240.396 kb on + strand, within BACOVA_03152 at 240.396 kb on + strand, within BACOVA_03152 at 240.418 kb on - strand, within BACOVA_03152 at 240.421 kb on + strand, within BACOVA_03152 at 240.424 kb on - strand, within BACOVA_03152 at 240.429 kb on + strand, within BACOVA_03152 at 240.429 kb on + strand, within BACOVA_03152 at 240.442 kb on + strand, within BACOVA_03152 at 240.443 kb on - strand, within BACOVA_03152 at 240.443 kb on - strand, within BACOVA_03152 at 240.450 kb on + strand, within BACOVA_03152 at 240.451 kb on - strand, within BACOVA_03152 at 240.637 kb on + strand, within BACOVA_03152 at 240.637 kb on + strand, within BACOVA_03152 at 240.638 kb on - strand, within BACOVA_03152 at 240.638 kb on - strand, within BACOVA_03152 at 240.674 kb on + strand, within BACOVA_03152 at 240.676 kb on + strand, within BACOVA_03152 at 240.676 kb on + strand, within BACOVA_03152 at 240.677 kb on - strand, within BACOVA_03152 at 240.681 kb on + strand, within BACOVA_03152 at 240.682 kb on - strand, within BACOVA_03152 at 240.682 kb on - strand, within BACOVA_03152 at 240.682 kb on - strand, within BACOVA_03152 at 240.687 kb on - strand, within BACOVA_03152 at 240.687 kb on - strand, within BACOVA_03152 at 240.722 kb on - strand, within BACOVA_03152 at 240.726 kb on - strand, within BACOVA_03152 at 240.726 kb on - strand, within BACOVA_03152 at 240.726 kb on - strand, within BACOVA_03152 at 240.741 kb on + strand, within BACOVA_03152 at 240.741 kb on + strand, within BACOVA_03152 at 240.742 kb on - strand, within BACOVA_03152 at 240.742 kb on - strand, within BACOVA_03152 at 240.747 kb on + strand, within BACOVA_03152 at 240.751 kb on - strand, within BACOVA_03152 at 240.753 kb on + strand, within BACOVA_03152 at 240.754 kb on - strand, within BACOVA_03152 at 240.754 kb on - strand, within BACOVA_03152 at 240.799 kb on - strand, within BACOVA_03152 at 240.799 kb on - strand, within BACOVA_03152 at 240.890 kb on - strand, within BACOVA_03152 at 240.916 kb on + strand at 240.917 kb on - strand at 240.926 kb on + strand at 240.926 kb on + strand at 240.938 kb on - strand at 240.956 kb on + strand at 240.957 kb on - strand at 240.964 kb on + strand at 240.979 kb on + strand at 240.980 kb on - strand at 240.981 kb on + strand at 240.981 kb on + strand at 240.981 kb on + strand at 240.982 kb on - strand at 240.999 kb on + strand at 241.003 kb on + strand at 241.004 kb on - strand at 241.023 kb on - strand at 241.025 kb on + strand at 241.035 kb on - strand at 241.035 kb on - strand at 241.035 kb on - strand at 241.055 kb on - strand at 241.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 238,196 - BACOVA_03149 0.56 -0.5 238,219 + BACOVA_03149 0.63 +1.5 238,219 + BACOVA_03149 0.63 +1.5 238,220 - BACOVA_03149 0.64 +1.4 238,250 - BACOVA_03149 0.73 +1.5 238,282 + BACOVA_03149 0.82 -1.2 238,283 - BACOVA_03149 0.83 +0.3 238,283 - BACOVA_03149 0.83 -0.4 238,283 - BACOVA_03149 0.83 -0.6 238,285 - BACOVA_03149 0.83 +2.3 238,286 + BACOVA_03149 0.83 -1.1 238,286 + BACOVA_03149 0.83 +0.1 238,286 + BACOVA_03149 0.83 -2.9 238,286 + BACOVA_03149 0.83 +1.5 238,286 + BACOVA_03149 0.83 +1.5 238,287 - BACOVA_03149 0.84 -2.0 238,287 - BACOVA_03149 0.84 +0.3 238,287 - BACOVA_03149 0.84 -1.6 238,287 - BACOVA_03149 0.84 +0.2 238,287 - BACOVA_03149 0.84 -0.1 238,287 - BACOVA_03149 0.84 -2.5 238,287 - BACOVA_03149 0.84 +0.6 238,299 - BACOVA_03149 0.87 -0.4 238,306 + BACOVA_03149 0.89 +0.4 238,307 - -0.1 238,308 + +0.1 238,309 - +3.8 238,309 - -0.8 238,338 + -1.1 238,338 + +0.7 238,339 - -1.0 238,344 - -0.7 238,349 + +0.2 238,351 + -1.0 238,351 + +0.1 238,351 + +0.1 238,352 - +1.9 238,383 + +1.0 238,457 + +1.3 238,469 + BACOVA_03150 0.10 +2.7 238,469 + BACOVA_03150 0.10 +0.3 238,469 + BACOVA_03150 0.10 +0.1 238,485 - BACOVA_03150 0.12 -0.0 238,547 + BACOVA_03150 0.21 +2.0 238,548 - BACOVA_03150 0.21 -0.9 238,549 + BACOVA_03150 0.21 +0.8 238,582 + BACOVA_03150 0.25 -0.5 238,617 + BACOVA_03150 0.30 -0.6 238,626 + BACOVA_03150 0.31 +0.9 238,627 - BACOVA_03150 0.31 -1.1 238,628 + BACOVA_03150 0.31 +0.1 238,677 - BACOVA_03150 0.38 +0.1 238,691 + BACOVA_03150 0.40 -1.9 238,699 + BACOVA_03150 0.41 +0.9 238,699 + BACOVA_03150 0.41 -0.6 238,699 + BACOVA_03150 0.41 -0.8 238,700 - BACOVA_03150 0.41 -1.8 238,744 + BACOVA_03150 0.47 -0.4 238,744 + BACOVA_03150 0.47 -0.6 238,781 + BACOVA_03150 0.52 +0.7 238,782 - BACOVA_03150 0.52 +0.6 238,783 + BACOVA_03150 0.52 -0.6 238,813 + BACOVA_03150 0.56 +0.7 238,824 + BACOVA_03150 0.58 -1.7 238,825 - BACOVA_03150 0.58 -0.3 238,862 + BACOVA_03150 0.63 +0.8 238,863 - BACOVA_03150 0.63 -0.1 238,865 + BACOVA_03150 0.63 -1.0 238,866 - BACOVA_03150 0.64 -0.9 238,889 + BACOVA_03150 0.67 +0.5 238,890 - BACOVA_03150 0.67 +0.4 238,898 - BACOVA_03150 0.68 -1.1 238,898 - BACOVA_03150 0.68 +3.2 238,898 - BACOVA_03150 0.68 +0.6 238,930 + BACOVA_03150 0.72 -1.1 238,931 - BACOVA_03150 0.72 -1.1 238,941 + BACOVA_03150 0.74 +0.2 238,980 - BACOVA_03150 0.79 -0.1 238,980 - BACOVA_03150 0.79 +1.5 239,060 + BACOVA_03150 0.90 -0.1 239,066 + -0.5 239,066 + -2.2 239,087 + -1.3 239,139 - -1.3 239,155 + -0.4 239,155 + +1.4 239,162 + -1.2 239,162 + -0.3 239,166 + -0.7 239,166 + +0.6 239,167 - -0.3 239,167 - +1.9 239,167 - +1.2 239,167 - +0.2 239,167 - -2.4 239,224 + +0.1 239,262 - +2.0 239,285 + BACOVA_03151 0.11 -0.3 239,288 + BACOVA_03151 0.12 +0.9 239,361 + BACOVA_03151 0.19 +0.6 239,362 - BACOVA_03151 0.19 -1.2 239,362 - BACOVA_03151 0.19 -0.2 239,363 + BACOVA_03151 0.19 -0.3 239,364 - BACOVA_03151 0.19 -0.1 239,378 - BACOVA_03151 0.21 +1.2 239,392 + BACOVA_03151 0.22 -1.0 239,392 + BACOVA_03151 0.22 +0.2 239,412 + BACOVA_03151 0.24 +1.1 239,433 + BACOVA_03151 0.26 +2.1 239,434 - BACOVA_03151 0.26 +0.0 239,485 + BACOVA_03151 0.31 +2.4 239,490 - BACOVA_03151 0.32 -0.3 239,558 + BACOVA_03151 0.39 +1.4 239,568 + BACOVA_03151 0.40 -0.0 239,568 + BACOVA_03151 0.40 +1.1 239,599 + BACOVA_03151 0.43 -1.2 239,600 - BACOVA_03151 0.43 -0.4 239,632 + BACOVA_03151 0.46 -0.2 239,632 + BACOVA_03151 0.46 -0.5 239,632 + BACOVA_03151 0.46 +1.2 239,633 - BACOVA_03151 0.46 -2.2 239,634 + BACOVA_03151 0.46 -0.1 239,684 - BACOVA_03151 0.51 +0.2 239,775 - BACOVA_03151 0.60 -0.6 239,803 + BACOVA_03151 0.63 -0.1 239,846 + BACOVA_03151 0.67 +0.3 239,886 + BACOVA_03151 0.71 -0.8 240,024 - BACOVA_03151 0.85 +1.7 240,040 - BACOVA_03151 0.87 -1.2 240,044 + BACOVA_03151 0.87 +0.0 240,045 - BACOVA_03151 0.87 +1.2 240,045 - BACOVA_03151 0.87 +1.5 240,113 - -0.6 240,122 + -1.6 240,263 - +1.4 240,298 - +0.8 240,302 + +0.4 240,353 - BACOVA_03152 0.16 +1.4 240,357 - BACOVA_03152 0.17 -0.8 240,365 - BACOVA_03152 0.18 +0.5 240,396 + BACOVA_03152 0.22 +0.7 240,396 + BACOVA_03152 0.22 -1.3 240,418 - BACOVA_03152 0.25 +0.4 240,421 + BACOVA_03152 0.25 -0.1 240,424 - BACOVA_03152 0.26 -0.1 240,429 + BACOVA_03152 0.27 +0.4 240,429 + BACOVA_03152 0.27 -0.3 240,442 + BACOVA_03152 0.28 -0.5 240,443 - BACOVA_03152 0.28 +0.9 240,443 - BACOVA_03152 0.28 -0.8 240,450 + BACOVA_03152 0.29 -0.7 240,451 - BACOVA_03152 0.29 -0.6 240,637 + BACOVA_03152 0.54 -2.1 240,637 + BACOVA_03152 0.54 -1.3 240,638 - BACOVA_03152 0.54 +0.2 240,638 - BACOVA_03152 0.54 -1.2 240,674 + BACOVA_03152 0.59 +0.2 240,676 + BACOVA_03152 0.59 -0.1 240,676 + BACOVA_03152 0.59 -0.7 240,677 - BACOVA_03152 0.60 -0.1 240,681 + BACOVA_03152 0.60 +1.1 240,682 - BACOVA_03152 0.60 -1.6 240,682 - BACOVA_03152 0.60 -0.2 240,682 - BACOVA_03152 0.60 -0.1 240,687 - BACOVA_03152 0.61 -0.7 240,687 - BACOVA_03152 0.61 -0.2 240,722 - BACOVA_03152 0.66 +0.5 240,726 - BACOVA_03152 0.66 -0.1 240,726 - BACOVA_03152 0.66 -0.0 240,726 - BACOVA_03152 0.66 +1.5 240,741 + BACOVA_03152 0.68 +0.9 240,741 + BACOVA_03152 0.68 +0.4 240,742 - BACOVA_03152 0.68 -0.6 240,742 - BACOVA_03152 0.68 +0.8 240,747 + BACOVA_03152 0.69 -0.6 240,751 - BACOVA_03152 0.69 +0.4 240,753 + BACOVA_03152 0.70 -1.5 240,754 - BACOVA_03152 0.70 -1.2 240,754 - BACOVA_03152 0.70 +0.2 240,799 - BACOVA_03152 0.76 +2.3 240,799 - BACOVA_03152 0.76 -1.2 240,890 - BACOVA_03152 0.88 -0.0 240,916 + +0.5 240,917 - -0.1 240,926 + -1.1 240,926 + -0.3 240,938 - +0.3 240,956 + +2.6 240,957 - +0.7 240,964 + +0.9 240,979 + -2.1 240,980 - +0.9 240,981 + +1.0 240,981 + +2.0 240,981 + -1.1 240,982 - -0.5 240,999 + +0.1 241,003 + -0.2 241,004 - +0.3 241,023 - -1.5 241,025 + +1.2 241,035 - +0.4 241,035 - -1.0 241,035 - +0.8 241,055 - -2.6 241,058 + -0.9
Or see this region's nucleotide sequence