Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03010

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03009 and BACOVA_03010 are separated by 36 nucleotidesBACOVA_03010 and BACOVA_03011 are separated by 143 nucleotides BACOVA_03009: BACOVA_03009 - hypothetical protein, at 81,865 to 83,010 _03009 BACOVA_03010: BACOVA_03010 - hypothetical protein, at 83,047 to 83,577 _03010 BACOVA_03011: BACOVA_03011 - transposase, IS4 family, at 83,721 to 84,914 _03011 Position (kb) 83 84Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 82.050 kb on + strand, within BACOVA_03009at 82.051 kb on - strand, within BACOVA_03009at 82.076 kb on + strand, within BACOVA_03009at 82.168 kb on + strand, within BACOVA_03009at 82.174 kb on + strand, within BACOVA_03009at 82.175 kb on - strand, within BACOVA_03009at 82.188 kb on + strand, within BACOVA_03009at 82.189 kb on - strand, within BACOVA_03009at 82.189 kb on - strand, within BACOVA_03009at 82.325 kb on + strand, within BACOVA_03009at 82.325 kb on + strand, within BACOVA_03009at 82.325 kb on + strand, within BACOVA_03009at 82.353 kb on + strand, within BACOVA_03009at 82.376 kb on + strand, within BACOVA_03009at 82.417 kb on - strand, within BACOVA_03009at 82.419 kb on - strand, within BACOVA_03009at 82.431 kb on + strand, within BACOVA_03009at 82.431 kb on + strand, within BACOVA_03009at 82.462 kb on + strand, within BACOVA_03009at 82.498 kb on + strand, within BACOVA_03009at 82.498 kb on + strand, within BACOVA_03009at 82.499 kb on - strand, within BACOVA_03009at 82.545 kb on + strand, within BACOVA_03009at 82.545 kb on + strand, within BACOVA_03009at 82.551 kb on + strand, within BACOVA_03009at 82.552 kb on - strand, within BACOVA_03009at 82.583 kb on + strand, within BACOVA_03009at 82.583 kb on + strand, within BACOVA_03009at 82.584 kb on - strand, within BACOVA_03009at 82.733 kb on + strand, within BACOVA_03009at 82.736 kb on + strand, within BACOVA_03009at 82.736 kb on + strand, within BACOVA_03009at 82.736 kb on + strand, within BACOVA_03009at 82.736 kb on + strand, within BACOVA_03009at 82.737 kb on - strand, within BACOVA_03009at 82.821 kb on + strand, within BACOVA_03009at 82.833 kb on + strand, within BACOVA_03009at 82.857 kb on + strand, within BACOVA_03009at 82.857 kb on + strand, within BACOVA_03009at 82.857 kb on + strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.862 kb on - strand, within BACOVA_03009at 82.875 kb on - strand, within BACOVA_03009at 82.932 kb on + strandat 82.932 kb on + strandat 82.932 kb on + strandat 82.932 kb on + strandat 82.933 kb on - strandat 82.933 kb on - strandat 82.936 kb on + strandat 82.936 kb on + strandat 82.936 kb on + strandat 82.965 kb on - strandat 82.977 kb on + strandat 82.977 kb on + strandat 82.978 kb on - strandat 82.979 kb on + strandat 82.979 kb on + strandat 82.980 kb on - strandat 82.980 kb on - strandat 83.087 kb on + strandat 83.087 kb on + strandat 83.122 kb on - strand, within BACOVA_03010at 83.140 kb on - strand, within BACOVA_03010at 83.142 kb on + strand, within BACOVA_03010at 83.205 kb on + strand, within BACOVA_03010at 83.274 kb on + strand, within BACOVA_03010at 83.291 kb on - strand, within BACOVA_03010at 83.321 kb on - strand, within BACOVA_03010at 83.406 kb on - strand, within BACOVA_03010at 83.422 kb on - strand, within BACOVA_03010at 83.422 kb on - strand, within BACOVA_03010at 83.436 kb on + strand, within BACOVA_03010at 83.437 kb on - strand, within BACOVA_03010at 83.451 kb on + strand, within BACOVA_03010at 83.451 kb on + strand, within BACOVA_03010at 83.451 kb on + strand, within BACOVA_03010at 83.452 kb on - strand, within BACOVA_03010at 83.453 kb on + strand, within BACOVA_03010at 83.453 kb on + strand, within BACOVA_03010at 83.454 kb on - strand, within BACOVA_03010at 83.454 kb on - strand, within BACOVA_03010at 83.465 kb on - strand, within BACOVA_03010at 83.495 kb on + strand, within BACOVA_03010at 83.514 kb on + strand, within BACOVA_03010at 83.566 kb on - strandat 83.576 kb on - strandat 83.576 kb on - strandat 83.584 kb on + strandat 83.594 kb on + strandat 83.612 kb on - strandat 83.618 kb on - strandat 83.618 kb on - strandat 83.644 kb on - strandat 83.644 kb on - strandat 83.648 kb on + strandat 83.649 kb on - strandat 83.649 kb on - strandat 83.689 kb on + strandat 83.690 kb on - strandat 83.695 kb on + strandat 83.696 kb on - strandat 83.696 kb on - strandat 83.698 kb on + strandat 83.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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82,050 + BACOVA_03009 0.16 -0.3
82,051 - BACOVA_03009 0.16 -1.4
82,076 + BACOVA_03009 0.18 -0.1
82,168 + BACOVA_03009 0.26 -0.6
82,174 + BACOVA_03009 0.27 -0.3
82,175 - BACOVA_03009 0.27 -0.6
82,188 + BACOVA_03009 0.28 +3.9
82,189 - BACOVA_03009 0.28 -0.6
82,189 - BACOVA_03009 0.28 -0.6
82,325 + BACOVA_03009 0.40 +0.7
82,325 + BACOVA_03009 0.40 +0.2
82,325 + BACOVA_03009 0.40 -0.5
82,353 + BACOVA_03009 0.43 -0.8
82,376 + BACOVA_03009 0.45 -0.6
82,417 - BACOVA_03009 0.48 -0.5
82,419 - BACOVA_03009 0.48 +0.1
82,431 + BACOVA_03009 0.49 +0.7
82,431 + BACOVA_03009 0.49 -0.8
82,462 + BACOVA_03009 0.52 -0.9
82,498 + BACOVA_03009 0.55 +0.6
82,498 + BACOVA_03009 0.55 +0.7
82,499 - BACOVA_03009 0.55 -0.6
82,545 + BACOVA_03009 0.59 +0.7
82,545 + BACOVA_03009 0.59 -1.2
82,551 + BACOVA_03009 0.60 -0.6
82,552 - BACOVA_03009 0.60 +2.9
82,583 + BACOVA_03009 0.63 +0.1
82,583 + BACOVA_03009 0.63 +1.7
82,584 - BACOVA_03009 0.63 +1.2
82,733 + BACOVA_03009 0.76 +0.7
82,736 + BACOVA_03009 0.76 +1.4
82,736 + BACOVA_03009 0.76 -0.1
82,736 + BACOVA_03009 0.76 +0.4
82,736 + BACOVA_03009 0.76 -0.2
82,737 - BACOVA_03009 0.76 -0.7
82,821 + BACOVA_03009 0.83 +1.4
82,833 + BACOVA_03009 0.84 -0.4
82,857 + BACOVA_03009 0.87 +0.1
82,857 + BACOVA_03009 0.87 -1.0
82,857 + BACOVA_03009 0.87 -0.8
82,858 - BACOVA_03009 0.87 -1.3
82,858 - BACOVA_03009 0.87 -1.8
82,858 - BACOVA_03009 0.87 +0.4
82,858 - BACOVA_03009 0.87 -0.8
82,858 - BACOVA_03009 0.87 +3.6
82,858 - BACOVA_03009 0.87 -1.9
82,862 - BACOVA_03009 0.87 +0.8
82,875 - BACOVA_03009 0.88 +0.0
82,932 + +1.1
82,932 + -0.1
82,932 + +0.2
82,932 + -1.6
82,933 - +1.2
82,933 - +0.5
82,936 + -0.7
82,936 + -0.3
82,936 + -2.2
82,965 - +1.6
82,977 + +0.9
82,977 + -1.2
82,978 - +1.3
82,979 + +1.3
82,979 + +0.7
82,980 - +0.3
82,980 - +0.1
83,087 + -0.4
83,087 + -0.6
83,122 - BACOVA_03010 0.14 +0.3
83,140 - BACOVA_03010 0.18 +0.8
83,142 + BACOVA_03010 0.18 -0.2
83,205 + BACOVA_03010 0.30 +0.7
83,274 + BACOVA_03010 0.43 -1.6
83,291 - BACOVA_03010 0.46 -0.8
83,321 - BACOVA_03010 0.52 -0.0
83,406 - BACOVA_03010 0.68 +2.5
83,422 - BACOVA_03010 0.71 +1.4
83,422 - BACOVA_03010 0.71 -0.1
83,436 + BACOVA_03010 0.73 +0.6
83,437 - BACOVA_03010 0.73 +1.4
83,451 + BACOVA_03010 0.76 +2.8
83,451 + BACOVA_03010 0.76 -0.0
83,451 + BACOVA_03010 0.76 -0.8
83,452 - BACOVA_03010 0.76 -1.4
83,453 + BACOVA_03010 0.76 -1.0
83,453 + BACOVA_03010 0.76 +1.7
83,454 - BACOVA_03010 0.77 -0.9
83,454 - BACOVA_03010 0.77 +0.5
83,465 - BACOVA_03010 0.79 +0.2
83,495 + BACOVA_03010 0.84 -1.3
83,514 + BACOVA_03010 0.88 +0.2
83,566 - +1.1
83,576 - -0.7
83,576 - +0.9
83,584 + -0.7
83,594 + -1.6
83,612 - -2.0
83,618 - -0.9
83,618 - -1.0
83,644 - -0.4
83,644 - +0.5
83,648 + -0.2
83,649 - -0.9
83,649 - +0.8
83,689 + -0.1
83,690 - +1.7
83,695 + -1.0
83,696 - +0.3
83,696 - +1.5
83,698 + +0.7
83,734 - +0.2

Or see this region's nucleotide sequence