Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02898 and BACOVA_02899 are separated by 122 nucleotides BACOVA_02899 and BACOVA_02900 are separated by 90 nucleotides BACOVA_02900 and BACOVA_02901 are separated by 138 nucleotides BACOVA_02901 and BACOVA_02902 are separated by 117 nucleotides
BACOVA_02898: BACOVA_02898 - hypothetical protein, at 401,031 to 401,921
_02898
BACOVA_02899: BACOVA_02899 - putative DNA-binding protein, at 402,044 to 402,562
_02899
BACOVA_02900: BACOVA_02900 - N-acetylmuramoyl-L-alanine amidase, at 402,653 to 403,120
_02900
BACOVA_02901: BACOVA_02901 - hypothetical protein, at 403,259 to 403,360
_02901
BACOVA_02902: BACOVA_02902 - hypothetical protein, at 403,478 to 405,442
_02902
Position (kb) 402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.093 kb on + strand at 401.094 kb on - strand at 401.166 kb on + strand, within BACOVA_02898 at 401.167 kb on - strand, within BACOVA_02898 at 401.167 kb on - strand, within BACOVA_02898 at 401.181 kb on + strand, within BACOVA_02898 at 401.182 kb on - strand, within BACOVA_02898 at 401.182 kb on - strand, within BACOVA_02898 at 401.184 kb on + strand, within BACOVA_02898 at 401.184 kb on + strand, within BACOVA_02898 at 401.184 kb on + strand, within BACOVA_02898 at 401.185 kb on - strand, within BACOVA_02898 at 401.185 kb on - strand, within BACOVA_02898 at 401.185 kb on - strand, within BACOVA_02898 at 401.185 kb on - strand, within BACOVA_02898 at 401.185 kb on - strand, within BACOVA_02898 at 401.185 kb on - strand, within BACOVA_02898 at 401.208 kb on + strand, within BACOVA_02898 at 401.232 kb on + strand, within BACOVA_02898 at 401.232 kb on + strand, within BACOVA_02898 at 401.261 kb on + strand, within BACOVA_02898 at 401.261 kb on + strand, within BACOVA_02898 at 401.261 kb on + strand, within BACOVA_02898 at 401.498 kb on - strand, within BACOVA_02898 at 401.794 kb on - strand, within BACOVA_02898 at 401.898 kb on + strand at 401.899 kb on - strand at 401.967 kb on - strand at 402.012 kb on + strand at 402.037 kb on + strand at 402.056 kb on + strand at 402.171 kb on - strand, within BACOVA_02899 at 402.195 kb on + strand, within BACOVA_02899 at 402.195 kb on + strand, within BACOVA_02899 at 402.307 kb on + strand, within BACOVA_02899 at 402.333 kb on + strand, within BACOVA_02899 at 402.334 kb on - strand, within BACOVA_02899 at 402.398 kb on - strand, within BACOVA_02899 at 402.481 kb on + strand, within BACOVA_02899 at 402.481 kb on + strand, within BACOVA_02899 at 402.488 kb on - strand, within BACOVA_02899 at 402.488 kb on - strand, within BACOVA_02899 at 402.561 kb on - strand at 402.625 kb on - strand at 402.633 kb on - strand at 402.633 kb on - strand at 402.639 kb on - strand at 402.670 kb on - strand at 402.707 kb on - strand, within BACOVA_02900 at 402.774 kb on - strand, within BACOVA_02900 at 402.862 kb on - strand, within BACOVA_02900 at 402.873 kb on - strand, within BACOVA_02900 at 403.134 kb on + strand at 403.144 kb on + strand at 403.176 kb on - strand at 403.179 kb on + strand at 403.179 kb on + strand at 403.179 kb on + strand at 403.181 kb on + strand at 403.182 kb on - strand at 403.285 kb on + strand, within BACOVA_02901 at 403.285 kb on + strand, within BACOVA_02901 at 403.285 kb on + strand, within BACOVA_02901 at 403.286 kb on - strand, within BACOVA_02901 at 403.304 kb on - strand, within BACOVA_02901 at 403.342 kb on + strand, within BACOVA_02901 at 403.370 kb on - strand at 403.373 kb on + strand at 403.410 kb on - strand at 403.429 kb on + strand at 403.448 kb on + strand at 403.451 kb on + strand at 403.452 kb on - strand at 403.483 kb on + strand at 403.487 kb on + strand at 403.492 kb on + strand at 403.493 kb on - strand at 403.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 401,093 + +0.8 401,094 - +0.9 401,166 + BACOVA_02898 0.15 -0.2 401,167 - BACOVA_02898 0.15 +0.9 401,167 - BACOVA_02898 0.15 +0.8 401,181 + BACOVA_02898 0.17 +0.3 401,182 - BACOVA_02898 0.17 -2.2 401,182 - BACOVA_02898 0.17 -0.5 401,184 + BACOVA_02898 0.17 +1.3 401,184 + BACOVA_02898 0.17 -0.9 401,184 + BACOVA_02898 0.17 -1.4 401,185 - BACOVA_02898 0.17 +1.5 401,185 - BACOVA_02898 0.17 -0.2 401,185 - BACOVA_02898 0.17 -1.0 401,185 - BACOVA_02898 0.17 +0.7 401,185 - BACOVA_02898 0.17 -1.6 401,185 - BACOVA_02898 0.17 +1.8 401,208 + BACOVA_02898 0.20 -1.3 401,232 + BACOVA_02898 0.23 +0.1 401,232 + BACOVA_02898 0.23 -0.1 401,261 + BACOVA_02898 0.26 -0.1 401,261 + BACOVA_02898 0.26 -0.1 401,261 + BACOVA_02898 0.26 +0.1 401,498 - BACOVA_02898 0.52 -0.7 401,794 - BACOVA_02898 0.86 +2.5 401,898 + -2.3 401,899 - -1.0 401,967 - -0.2 402,012 + +0.3 402,037 + -0.6 402,056 + +0.7 402,171 - BACOVA_02899 0.24 +2.0 402,195 + BACOVA_02899 0.29 +0.1 402,195 + BACOVA_02899 0.29 -1.1 402,307 + BACOVA_02899 0.51 +0.3 402,333 + BACOVA_02899 0.56 -1.1 402,334 - BACOVA_02899 0.56 -1.8 402,398 - BACOVA_02899 0.68 +0.9 402,481 + BACOVA_02899 0.84 +0.6 402,481 + BACOVA_02899 0.84 -0.8 402,488 - BACOVA_02899 0.86 +0.7 402,488 - BACOVA_02899 0.86 -0.8 402,561 - +1.0 402,625 - -1.4 402,633 - +0.6 402,633 - +0.9 402,639 - -1.1 402,670 - +1.4 402,707 - BACOVA_02900 0.12 -1.3 402,774 - BACOVA_02900 0.26 -0.4 402,862 - BACOVA_02900 0.45 -0.6 402,873 - BACOVA_02900 0.47 +1.4 403,134 + +0.1 403,144 + +0.7 403,176 - -0.2 403,179 + +0.7 403,179 + -0.7 403,179 + -0.9 403,181 + +0.7 403,182 - -0.3 403,285 + BACOVA_02901 0.25 -0.9 403,285 + BACOVA_02901 0.25 -0.2 403,285 + BACOVA_02901 0.25 -1.0 403,286 - BACOVA_02901 0.26 +0.5 403,304 - BACOVA_02901 0.44 -2.1 403,342 + BACOVA_02901 0.81 +0.2 403,370 - -0.2 403,373 + -0.6 403,410 - +1.1 403,429 + -0.8 403,448 + -0.1 403,451 + -1.0 403,452 - -1.4 403,483 + -1.8 403,487 + -0.0 403,492 + +1.8 403,493 - -0.3 403,528 + -0.9
Or see this region's nucleotide sequence