Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02855

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02853 and BACOVA_02854 are separated by 243 nucleotidesBACOVA_02854 and BACOVA_02855 are separated by 38 nucleotidesBACOVA_02855 and BACOVA_02856 are separated by 594 nucleotides BACOVA_02853: BACOVA_02853 - radical SAM domain protein, at 337,667 to 338,440 _02853 BACOVA_02854: BACOVA_02854 - hypothetical protein, at 338,684 to 338,902 _02854 BACOVA_02855: BACOVA_02855 - hypothetical protein, at 338,941 to 339,063 _02855 BACOVA_02856: BACOVA_02856 - hypothetical protein, at 339,658 to 339,921 _02856 Position (kb) 338 339 340Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 337.965 kb on + strand, within BACOVA_02853at 338.032 kb on + strand, within BACOVA_02853at 338.077 kb on - strand, within BACOVA_02853at 338.081 kb on - strand, within BACOVA_02853at 338.081 kb on - strand, within BACOVA_02853at 338.084 kb on - strand, within BACOVA_02853at 338.086 kb on + strand, within BACOVA_02853at 338.118 kb on - strand, within BACOVA_02853at 338.251 kb on + strand, within BACOVA_02853at 338.251 kb on + strand, within BACOVA_02853at 338.252 kb on - strand, within BACOVA_02853at 338.252 kb on - strand, within BACOVA_02853at 338.254 kb on + strand, within BACOVA_02853at 338.322 kb on + strand, within BACOVA_02853at 338.324 kb on + strand, within BACOVA_02853at 338.326 kb on + strand, within BACOVA_02853at 338.326 kb on + strand, within BACOVA_02853at 338.327 kb on - strand, within BACOVA_02853at 338.383 kb on - strandat 338.389 kb on + strandat 338.417 kb on - strandat 338.417 kb on - strandat 338.435 kb on + strandat 338.444 kb on - strandat 338.462 kb on + strandat 338.463 kb on - strandat 338.476 kb on - strandat 338.479 kb on - strandat 338.496 kb on + strandat 338.497 kb on - strandat 338.497 kb on - strandat 338.529 kb on - strandat 338.531 kb on - strandat 338.537 kb on + strandat 338.542 kb on + strandat 338.543 kb on - strandat 338.558 kb on - strandat 338.597 kb on + strandat 338.598 kb on - strandat 338.598 kb on - strandat 338.654 kb on + strandat 338.654 kb on + strandat 338.700 kb on - strandat 338.731 kb on - strand, within BACOVA_02854at 338.826 kb on + strand, within BACOVA_02854at 338.830 kb on + strand, within BACOVA_02854at 338.863 kb on - strand, within BACOVA_02854at 338.901 kb on - strandat 338.955 kb on + strand, within BACOVA_02855at 338.967 kb on - strand, within BACOVA_02855at 339.126 kb on - strandat 339.138 kb on - strandat 339.173 kb on + strandat 339.178 kb on - strandat 339.226 kb on - strandat 339.344 kb on + strandat 339.344 kb on + strandat 339.353 kb on + strandat 339.369 kb on - strandat 339.374 kb on + strandat 339.375 kb on - strandat 339.385 kb on + strandat 339.386 kb on - strandat 339.386 kb on - strandat 339.411 kb on - strandat 339.412 kb on + strandat 339.413 kb on - strandat 339.413 kb on - strandat 339.414 kb on + strandat 339.414 kb on + strandat 339.415 kb on - strandat 339.415 kb on - strandat 339.418 kb on - strandat 339.427 kb on - strandat 339.441 kb on - strandat 339.553 kb on + strandat 339.554 kb on - strandat 339.554 kb on - strandat 339.555 kb on + strandat 339.556 kb on - strandat 339.600 kb on + strandat 339.706 kb on + strand, within BACOVA_02856at 339.716 kb on + strand, within BACOVA_02856at 339.716 kb on + strand, within BACOVA_02856at 339.716 kb on + strand, within BACOVA_02856at 339.716 kb on + strand, within BACOVA_02856at 339.717 kb on - strand, within BACOVA_02856at 339.717 kb on - strand, within BACOVA_02856at 339.751 kb on + strand, within BACOVA_02856at 339.836 kb on - strand, within BACOVA_02856at 339.861 kb on + strand, within BACOVA_02856at 339.861 kb on + strand, within BACOVA_02856at 339.862 kb on - strand, within BACOVA_02856at 339.876 kb on - strand, within BACOVA_02856at 339.876 kb on - strand, within BACOVA_02856at 339.879 kb on + strand, within BACOVA_02856at 339.921 kb on + strandat 339.921 kb on + strandat 339.970 kb on + strandat 339.971 kb on - strandat 340.010 kb on - strandat 340.010 kb on - strandat 340.011 kb on + strandat 340.012 kb on - strandat 340.033 kb on + strandat 340.033 kb on + strandat 340.034 kb on - strandat 340.042 kb on - strandat 340.042 kb on - strandat 340.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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337,965 + BACOVA_02853 0.39 +0.5
338,032 + BACOVA_02853 0.47 -1.5
338,077 - BACOVA_02853 0.53 -0.8
338,081 - BACOVA_02853 0.53 -2.9
338,081 - BACOVA_02853 0.53 -0.8
338,084 - BACOVA_02853 0.54 -3.1
338,086 + BACOVA_02853 0.54 +0.5
338,118 - BACOVA_02853 0.58 -1.1
338,251 + BACOVA_02853 0.75 -1.4
338,251 + BACOVA_02853 0.75 -1.4
338,252 - BACOVA_02853 0.76 +1.1
338,252 - BACOVA_02853 0.76 +1.5
338,254 + BACOVA_02853 0.76 -1.1
338,322 + BACOVA_02853 0.85 -1.2
338,324 + BACOVA_02853 0.85 +0.4
338,326 + BACOVA_02853 0.85 -1.3
338,326 + BACOVA_02853 0.85 -1.8
338,327 - BACOVA_02853 0.85 +0.6
338,383 - -1.1
338,389 + +1.0
338,417 - -1.2
338,417 - -1.6
338,435 + -0.3
338,444 - -0.4
338,462 + -0.7
338,463 - -2.1
338,476 - +0.2
338,479 - -0.6
338,496 + -3.1
338,497 - -0.5
338,497 - -0.3
338,529 - +1.7
338,531 - -2.4
338,537 + +2.1
338,542 + -0.6
338,543 - -0.4
338,558 - +0.3
338,597 + +0.0
338,598 - -0.9
338,598 - -0.5
338,654 + -1.5
338,654 + -1.3
338,700 - -0.8
338,731 - BACOVA_02854 0.21 -0.6
338,826 + BACOVA_02854 0.65 -1.1
338,830 + BACOVA_02854 0.67 -1.2
338,863 - BACOVA_02854 0.82 -1.0
338,901 - +1.0
338,955 + BACOVA_02855 0.11 -0.2
338,967 - BACOVA_02855 0.21 -0.9
339,126 - -1.0
339,138 - +0.2
339,173 + -0.7
339,178 - +1.9
339,226 - -1.2
339,344 + +0.5
339,344 + -1.8
339,353 + +1.7
339,369 - +0.2
339,374 + +2.3
339,375 - -0.8
339,385 + +1.8
339,386 - -1.5
339,386 - +2.3
339,411 - -0.7
339,412 + +0.2
339,413 - +2.6
339,413 - -0.2
339,414 + -0.3
339,414 + -1.4
339,415 - -3.2
339,415 - -0.6
339,418 - +1.6
339,427 - -1.3
339,441 - -1.6
339,553 + -0.0
339,554 - -1.7
339,554 - +0.1
339,555 + +0.2
339,556 - +0.5
339,600 + +1.8
339,706 + BACOVA_02856 0.18 +0.3
339,716 + BACOVA_02856 0.22 -0.8
339,716 + BACOVA_02856 0.22 -0.1
339,716 + BACOVA_02856 0.22 +0.4
339,716 + BACOVA_02856 0.22 -0.1
339,717 - BACOVA_02856 0.22 -0.7
339,717 - BACOVA_02856 0.22 -0.4
339,751 + BACOVA_02856 0.35 -0.9
339,836 - BACOVA_02856 0.67 +0.1
339,861 + BACOVA_02856 0.77 -0.0
339,861 + BACOVA_02856 0.77 +0.2
339,862 - BACOVA_02856 0.77 -1.9
339,876 - BACOVA_02856 0.83 +0.6
339,876 - BACOVA_02856 0.83 +0.4
339,879 + BACOVA_02856 0.84 +2.6
339,921 + -0.1
339,921 + -1.3
339,970 + -0.6
339,971 - -0.0
340,010 - -0.9
340,010 - +0.0
340,011 + -0.1
340,012 - -0.5
340,033 + -1.5
340,033 + +0.9
340,034 - -0.2
340,042 - -0.2
340,042 - +0.1
340,042 - +0.6

Or see this region's nucleotide sequence