Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02711

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02710 and BACOVA_02711 are separated by 7 nucleotidesBACOVA_02711 and BACOVA_02712 are separated by 35 nucleotides BACOVA_02710: BACOVA_02710 - glycosyl hydrolase family 2, sugar binding domain protein, at 131,752 to 133,812 _02710 BACOVA_02711: BACOVA_02711 - glycosyl hydrolase, family 88, at 133,820 to 135,046 _02711 BACOVA_02712: BACOVA_02712 - hypothetical protein, at 135,082 to 136,299 _02712 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 132.869 kb on - strand, within BACOVA_02710at 132.869 kb on - strand, within BACOVA_02710at 132.896 kb on + strand, within BACOVA_02710at 132.897 kb on - strand, within BACOVA_02710at 132.954 kb on - strand, within BACOVA_02710at 133.004 kb on + strand, within BACOVA_02710at 133.005 kb on - strand, within BACOVA_02710at 133.027 kb on + strand, within BACOVA_02710at 133.028 kb on - strand, within BACOVA_02710at 133.116 kb on + strand, within BACOVA_02710at 133.117 kb on - strand, within BACOVA_02710at 133.120 kb on - strand, within BACOVA_02710at 133.123 kb on + strand, within BACOVA_02710at 133.124 kb on - strand, within BACOVA_02710at 133.131 kb on + strand, within BACOVA_02710at 133.248 kb on + strand, within BACOVA_02710at 133.252 kb on + strand, within BACOVA_02710at 133.284 kb on + strand, within BACOVA_02710at 133.327 kb on - strand, within BACOVA_02710at 133.341 kb on + strand, within BACOVA_02710at 133.387 kb on - strand, within BACOVA_02710at 133.453 kb on - strand, within BACOVA_02710at 133.454 kb on + strand, within BACOVA_02710at 133.455 kb on - strand, within BACOVA_02710at 133.455 kb on - strand, within BACOVA_02710at 133.492 kb on - strand, within BACOVA_02710at 133.492 kb on - strand, within BACOVA_02710at 133.564 kb on + strand, within BACOVA_02710at 133.580 kb on + strand, within BACOVA_02710at 133.583 kb on - strand, within BACOVA_02710at 133.601 kb on + strand, within BACOVA_02710at 133.602 kb on - strand, within BACOVA_02710at 133.602 kb on - strand, within BACOVA_02710at 133.603 kb on + strand, within BACOVA_02710at 133.603 kb on + strand, within BACOVA_02710at 133.604 kb on - strand, within BACOVA_02710at 133.608 kb on + strandat 133.623 kb on - strandat 133.623 kb on - strandat 133.638 kb on + strandat 133.639 kb on - strandat 133.645 kb on + strandat 133.646 kb on - strandat 133.678 kb on + strandat 133.678 kb on + strandat 133.689 kb on + strandat 133.696 kb on - strandat 133.754 kb on - strandat 133.761 kb on + strandat 133.762 kb on - strandat 133.762 kb on - strandat 133.762 kb on - strandat 133.780 kb on + strandat 133.821 kb on + strandat 133.821 kb on + strandat 133.854 kb on - strandat 133.894 kb on - strandat 133.897 kb on - strandat 133.917 kb on - strandat 133.946 kb on - strand, within BACOVA_02711at 133.950 kb on - strand, within BACOVA_02711at 134.002 kb on + strand, within BACOVA_02711at 134.021 kb on + strand, within BACOVA_02711at 134.068 kb on + strand, within BACOVA_02711at 134.073 kb on + strand, within BACOVA_02711at 134.074 kb on - strand, within BACOVA_02711at 134.143 kb on + strand, within BACOVA_02711at 134.166 kb on + strand, within BACOVA_02711at 134.177 kb on - strand, within BACOVA_02711at 134.177 kb on - strand, within BACOVA_02711at 134.217 kb on - strand, within BACOVA_02711at 134.217 kb on - strand, within BACOVA_02711at 134.217 kb on - strand, within BACOVA_02711at 134.222 kb on + strand, within BACOVA_02711at 134.238 kb on + strand, within BACOVA_02711at 134.262 kb on + strand, within BACOVA_02711at 134.270 kb on + strand, within BACOVA_02711at 134.271 kb on - strand, within BACOVA_02711at 134.271 kb on - strand, within BACOVA_02711at 134.271 kb on - strand, within BACOVA_02711at 134.274 kb on + strand, within BACOVA_02711at 134.274 kb on + strand, within BACOVA_02711at 134.280 kb on + strand, within BACOVA_02711at 134.280 kb on + strand, within BACOVA_02711at 134.334 kb on + strand, within BACOVA_02711at 134.334 kb on + strand, within BACOVA_02711at 134.334 kb on + strand, within BACOVA_02711at 134.335 kb on - strand, within BACOVA_02711at 134.338 kb on + strand, within BACOVA_02711at 134.338 kb on + strand, within BACOVA_02711at 134.374 kb on - strand, within BACOVA_02711at 134.378 kb on + strand, within BACOVA_02711at 134.379 kb on - strand, within BACOVA_02711at 134.395 kb on + strand, within BACOVA_02711at 134.395 kb on + strand, within BACOVA_02711at 134.395 kb on + strand, within BACOVA_02711at 134.426 kb on - strand, within BACOVA_02711at 134.428 kb on + strand, within BACOVA_02711at 134.448 kb on - strand, within BACOVA_02711at 134.492 kb on + strand, within BACOVA_02711at 134.493 kb on - strand, within BACOVA_02711at 134.512 kb on + strand, within BACOVA_02711at 134.515 kb on + strand, within BACOVA_02711at 134.516 kb on - strand, within BACOVA_02711at 134.516 kb on - strand, within BACOVA_02711at 134.590 kb on + strand, within BACOVA_02711at 134.612 kb on + strand, within BACOVA_02711at 134.613 kb on - strand, within BACOVA_02711at 134.626 kb on + strand, within BACOVA_02711at 134.626 kb on + strand, within BACOVA_02711at 134.626 kb on + strand, within BACOVA_02711at 134.626 kb on + strand, within BACOVA_02711at 134.626 kb on + strand, within BACOVA_02711at 134.629 kb on - strand, within BACOVA_02711at 134.673 kb on + strand, within BACOVA_02711at 134.681 kb on - strand, within BACOVA_02711at 134.699 kb on - strand, within BACOVA_02711at 134.708 kb on - strand, within BACOVA_02711at 134.735 kb on - strand, within BACOVA_02711at 134.748 kb on + strand, within BACOVA_02711at 134.782 kb on - strand, within BACOVA_02711at 134.787 kb on + strand, within BACOVA_02711at 134.788 kb on - strand, within BACOVA_02711at 134.795 kb on + strand, within BACOVA_02711at 134.796 kb on - strand, within BACOVA_02711at 134.796 kb on - strand, within BACOVA_02711at 134.857 kb on + strand, within BACOVA_02711at 134.861 kb on + strand, within BACOVA_02711at 134.944 kb on + strandat 134.944 kb on + strandat 134.945 kb on - strandat 134.949 kb on - strandat 134.950 kb on + strandat 134.953 kb on + strandat 134.954 kb on - strandat 134.956 kb on + strandat 134.974 kb on + strandat 134.975 kb on - strandat 135.013 kb on + strandat 135.072 kb on + strandat 135.072 kb on + strandat 135.077 kb on - strandat 135.077 kb on - strandat 135.077 kb on - strandat 135.084 kb on - strandat 135.106 kb on - strandat 135.124 kb on - strandat 135.136 kb on + strandat 135.219 kb on + strand, within BACOVA_02712at 135.221 kb on + strand, within BACOVA_02712at 135.221 kb on + strand, within BACOVA_02712at 135.305 kb on + strand, within BACOVA_02712at 135.305 kb on + strand, within BACOVA_02712at 135.306 kb on - strand, within BACOVA_02712at 135.306 kb on - strand, within BACOVA_02712at 135.441 kb on + strand, within BACOVA_02712at 135.461 kb on + strand, within BACOVA_02712at 135.462 kb on - strand, within BACOVA_02712at 135.577 kb on + strand, within BACOVA_02712at 135.579 kb on + strand, within BACOVA_02712at 135.579 kb on + strand, within BACOVA_02712at 135.580 kb on - strand, within BACOVA_02712at 135.612 kb on + strand, within BACOVA_02712at 135.615 kb on - strand, within BACOVA_02712at 135.615 kb on - strand, within BACOVA_02712at 135.617 kb on + strand, within BACOVA_02712at 135.618 kb on - strand, within BACOVA_02712at 135.647 kb on + strand, within BACOVA_02712at 135.663 kb on + strand, within BACOVA_02712at 135.665 kb on + strand, within BACOVA_02712at 135.673 kb on + strand, within BACOVA_02712at 135.692 kb on + strand, within BACOVA_02712at 135.693 kb on - strand, within BACOVA_02712at 135.693 kb on - strand, within BACOVA_02712at 135.835 kb on - strand, within BACOVA_02712at 135.837 kb on + strand, within BACOVA_02712at 135.886 kb on + strand, within BACOVA_02712at 135.904 kb on + strand, within BACOVA_02712at 135.917 kb on + strand, within BACOVA_02712at 135.918 kb on - strand, within BACOVA_02712at 135.982 kb on + strand, within BACOVA_02712at 135.995 kb on + strand, within BACOVA_02712at 135.996 kb on - strand, within BACOVA_02712at 136.000 kb on - strand, within BACOVA_02712

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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132,869 - BACOVA_02710 0.54 -1.4
132,869 - BACOVA_02710 0.54 -1.3
132,896 + BACOVA_02710 0.56 -0.1
132,897 - BACOVA_02710 0.56 -0.1
132,954 - BACOVA_02710 0.58 -0.6
133,004 + BACOVA_02710 0.61 -2.2
133,005 - BACOVA_02710 0.61 -1.1
133,027 + BACOVA_02710 0.62 -1.1
133,028 - BACOVA_02710 0.62 -0.8
133,116 + BACOVA_02710 0.66 +0.2
133,117 - BACOVA_02710 0.66 -0.4
133,120 - BACOVA_02710 0.66 +0.7
133,123 + BACOVA_02710 0.67 -2.5
133,124 - BACOVA_02710 0.67 +0.1
133,131 + BACOVA_02710 0.67 -0.5
133,248 + BACOVA_02710 0.73 -3.2
133,252 + BACOVA_02710 0.73 -0.3
133,284 + BACOVA_02710 0.74 -0.9
133,327 - BACOVA_02710 0.76 -1.2
133,341 + BACOVA_02710 0.77 -0.3
133,387 - BACOVA_02710 0.79 -1.3
133,453 - BACOVA_02710 0.83 -2.0
133,454 + BACOVA_02710 0.83 +0.0
133,455 - BACOVA_02710 0.83 +0.6
133,455 - BACOVA_02710 0.83 +1.3
133,492 - BACOVA_02710 0.84 +0.4
133,492 - BACOVA_02710 0.84 -0.9
133,564 + BACOVA_02710 0.88 +0.5
133,580 + BACOVA_02710 0.89 -2.1
133,583 - BACOVA_02710 0.89 -0.3
133,601 + BACOVA_02710 0.90 -2.3
133,602 - BACOVA_02710 0.90 -0.0
133,602 - BACOVA_02710 0.90 -0.3
133,603 + BACOVA_02710 0.90 -0.4
133,603 + BACOVA_02710 0.90 -0.7
133,604 - BACOVA_02710 0.90 -0.8
133,608 + -0.0
133,623 - -1.6
133,623 - -0.3
133,638 + -1.4
133,639 - -0.3
133,645 + +2.3
133,646 - +1.4
133,678 + -0.5
133,678 + +0.8
133,689 + -0.6
133,696 - -0.1
133,754 - -0.6
133,761 + -0.6
133,762 - +0.7
133,762 - -1.1
133,762 - -1.5
133,780 + -1.3
133,821 + +0.2
133,821 + -3.5
133,854 - -0.7
133,894 - +1.9
133,897 - -0.3
133,917 - +0.1
133,946 - BACOVA_02711 0.10 -0.2
133,950 - BACOVA_02711 0.11 -0.7
134,002 + BACOVA_02711 0.15 -0.3
134,021 + BACOVA_02711 0.16 -1.1
134,068 + BACOVA_02711 0.20 -1.8
134,073 + BACOVA_02711 0.21 +0.5
134,074 - BACOVA_02711 0.21 +0.7
134,143 + BACOVA_02711 0.26 -0.0
134,166 + BACOVA_02711 0.28 +1.9
134,177 - BACOVA_02711 0.29 -0.6
134,177 - BACOVA_02711 0.29 -0.8
134,217 - BACOVA_02711 0.32 +0.1
134,217 - BACOVA_02711 0.32 -0.0
134,217 - BACOVA_02711 0.32 -1.4
134,222 + BACOVA_02711 0.33 +0.6
134,238 + BACOVA_02711 0.34 +2.4
134,262 + BACOVA_02711 0.36 -0.5
134,270 + BACOVA_02711 0.37 -0.5
134,271 - BACOVA_02711 0.37 +1.0
134,271 - BACOVA_02711 0.37 +1.5
134,271 - BACOVA_02711 0.37 -0.4
134,274 + BACOVA_02711 0.37 -0.5
134,274 + BACOVA_02711 0.37 -0.4
134,280 + BACOVA_02711 0.37 -0.3
134,280 + BACOVA_02711 0.37 +1.2
134,334 + BACOVA_02711 0.42 -1.1
134,334 + BACOVA_02711 0.42 +0.2
134,334 + BACOVA_02711 0.42 -0.1
134,335 - BACOVA_02711 0.42 -1.2
134,338 + BACOVA_02711 0.42 +0.6
134,338 + BACOVA_02711 0.42 -2.9
134,374 - BACOVA_02711 0.45 -0.2
134,378 + BACOVA_02711 0.45 -0.3
134,379 - BACOVA_02711 0.46 -1.6
134,395 + BACOVA_02711 0.47 -0.6
134,395 + BACOVA_02711 0.47 +0.0
134,395 + BACOVA_02711 0.47 +1.2
134,426 - BACOVA_02711 0.49 -1.1
134,428 + BACOVA_02711 0.50 +0.1
134,448 - BACOVA_02711 0.51 -2.6
134,492 + BACOVA_02711 0.55 -1.3
134,493 - BACOVA_02711 0.55 +2.0
134,512 + BACOVA_02711 0.56 +2.0
134,515 + BACOVA_02711 0.57 +0.0
134,516 - BACOVA_02711 0.57 +0.5
134,516 - BACOVA_02711 0.57 +1.9
134,590 + BACOVA_02711 0.63 -0.5
134,612 + BACOVA_02711 0.65 -0.3
134,613 - BACOVA_02711 0.65 -0.8
134,626 + BACOVA_02711 0.66 +2.7
134,626 + BACOVA_02711 0.66 +0.7
134,626 + BACOVA_02711 0.66 +0.4
134,626 + BACOVA_02711 0.66 +2.5
134,626 + BACOVA_02711 0.66 -1.6
134,629 - BACOVA_02711 0.66 -0.4
134,673 + BACOVA_02711 0.70 -0.4
134,681 - BACOVA_02711 0.70 -1.1
134,699 - BACOVA_02711 0.72 -0.3
134,708 - BACOVA_02711 0.72 -0.1
134,735 - BACOVA_02711 0.75 -0.1
134,748 + BACOVA_02711 0.76 +0.5
134,782 - BACOVA_02711 0.78 +1.1
134,787 + BACOVA_02711 0.79 -1.2
134,788 - BACOVA_02711 0.79 -1.3
134,795 + BACOVA_02711 0.79 -0.5
134,796 - BACOVA_02711 0.80 -1.1
134,796 - BACOVA_02711 0.80 -2.0
134,857 + BACOVA_02711 0.85 -1.0
134,861 + BACOVA_02711 0.85 +1.1
134,944 + -1.0
134,944 + +0.2
134,945 - -0.4
134,949 - +0.2
134,950 + -0.6
134,953 + -0.5
134,954 - -2.8
134,956 + -1.1
134,974 + -1.0
134,975 - -0.3
135,013 + -1.6
135,072 + +0.4
135,072 + +0.3
135,077 - -0.6
135,077 - -1.3
135,077 - -1.5
135,084 - -0.9
135,106 - -1.4
135,124 - -0.6
135,136 + -1.6
135,219 + BACOVA_02712 0.11 -2.1
135,221 + BACOVA_02712 0.11 -1.6
135,221 + BACOVA_02712 0.11 -0.2
135,305 + BACOVA_02712 0.18 -0.7
135,305 + BACOVA_02712 0.18 +0.5
135,306 - BACOVA_02712 0.18 -0.2
135,306 - BACOVA_02712 0.18 -1.0
135,441 + BACOVA_02712 0.29 -1.7
135,461 + BACOVA_02712 0.31 +3.3
135,462 - BACOVA_02712 0.31 -1.1
135,577 + BACOVA_02712 0.41 +3.2
135,579 + BACOVA_02712 0.41 +0.4
135,579 + BACOVA_02712 0.41 +0.1
135,580 - BACOVA_02712 0.41 +0.0
135,612 + BACOVA_02712 0.44 -1.1
135,615 - BACOVA_02712 0.44 -0.9
135,615 - BACOVA_02712 0.44 +2.0
135,617 + BACOVA_02712 0.44 -0.4
135,618 - BACOVA_02712 0.44 -1.0
135,647 + BACOVA_02712 0.46 -0.5
135,663 + BACOVA_02712 0.48 -0.5
135,665 + BACOVA_02712 0.48 -1.0
135,673 + BACOVA_02712 0.49 +0.5
135,692 + BACOVA_02712 0.50 +0.7
135,693 - BACOVA_02712 0.50 -0.3
135,693 - BACOVA_02712 0.50 -0.5
135,835 - BACOVA_02712 0.62 -0.4
135,837 + BACOVA_02712 0.62 -0.5
135,886 + BACOVA_02712 0.66 -0.0
135,904 + BACOVA_02712 0.67 -1.1
135,917 + BACOVA_02712 0.69 -0.3
135,918 - BACOVA_02712 0.69 -1.3
135,982 + BACOVA_02712 0.74 -1.3
135,995 + BACOVA_02712 0.75 -0.3
135,996 - BACOVA_02712 0.75 -1.0
136,000 - BACOVA_02712 0.75 -0.3

Or see this region's nucleotide sequence