Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02231 and BACOVA_02232 are separated by 200 nucleotides BACOVA_02232 and BACOVA_02233 are separated by 29 nucleotides BACOVA_02233 and BACOVA_02235 are separated by 154 nucleotides BACOVA_02235 and BACOVA_02234 overlap by 24 nucleotides BACOVA_02234 and BACOVA_02236 are separated by 7 nucleotides
BACOVA_02231: BACOVA_02231 - VirE N-terminal domain protein, at 13,838 to 14,431
_02231
BACOVA_02232: BACOVA_02232 - hypothetical protein, at 14,632 to 14,772
_02232
BACOVA_02233: BACOVA_02233 - hypothetical protein, at 14,802 to 14,906
_02233
BACOVA_02235: BACOVA_02235 - hypothetical protein, at 15,061 to 15,168
_02235
BACOVA_02234: BACOVA_02234 - positive regulator of sigma(E), RseC/MucC, at 15,145 to 15,570
_02234
BACOVA_02236: BACOVA_02236 - electron transport complex, RnfABCDGE type, B subunit, at 15,578 to 16,531
_02236
Position (kb) 14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 13.825 kb on + strand at 13.839 kb on + strand at 13.839 kb on + strand at 13.839 kb on + strand at 13.839 kb on + strand at 13.869 kb on + strand at 13.951 kb on + strand, within BACOVA_02231 at 13.956 kb on + strand, within BACOVA_02231 at 13.956 kb on + strand, within BACOVA_02231 at 13.957 kb on - strand, within BACOVA_02231 at 13.972 kb on - strand, within BACOVA_02231 at 14.003 kb on - strand, within BACOVA_02231 at 14.078 kb on - strand, within BACOVA_02231 at 14.087 kb on + strand, within BACOVA_02231 at 14.096 kb on + strand, within BACOVA_02231 at 14.119 kb on + strand, within BACOVA_02231 at 14.120 kb on - strand, within BACOVA_02231 at 14.133 kb on - strand, within BACOVA_02231 at 14.168 kb on + strand, within BACOVA_02231 at 14.241 kb on + strand, within BACOVA_02231 at 14.242 kb on - strand, within BACOVA_02231 at 14.271 kb on - strand, within BACOVA_02231 at 14.271 kb on - strand, within BACOVA_02231 at 14.273 kb on - strand, within BACOVA_02231 at 14.273 kb on - strand, within BACOVA_02231 at 14.289 kb on - strand, within BACOVA_02231 at 14.326 kb on + strand, within BACOVA_02231 at 14.327 kb on - strand, within BACOVA_02231 at 14.327 kb on - strand, within BACOVA_02231 at 14.422 kb on + strand at 14.436 kb on + strand at 14.476 kb on + strand at 14.507 kb on + strand at 14.539 kb on + strand at 14.543 kb on - strand at 14.545 kb on + strand at 14.546 kb on - strand at 14.546 kb on - strand at 14.568 kb on + strand at 14.569 kb on - strand at 14.671 kb on + strand, within BACOVA_02232 at 14.671 kb on + strand, within BACOVA_02232 at 14.673 kb on + strand, within BACOVA_02232 at 14.673 kb on + strand, within BACOVA_02232 at 14.677 kb on - strand, within BACOVA_02232 at 14.713 kb on + strand, within BACOVA_02232 at 14.714 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.760 kb on - strand at 14.817 kb on + strand, within BACOVA_02233 at 14.872 kb on - strand, within BACOVA_02233 at 14.872 kb on - strand, within BACOVA_02233 at 14.883 kb on + strand, within BACOVA_02233 at 14.897 kb on - strand at 14.979 kb on + strand at 15.016 kb on - strand at 15.102 kb on + strand, within BACOVA_02235 at 15.157 kb on - strand at 15.160 kb on - strand at 15.162 kb on - strand at 15.162 kb on - strand at 15.188 kb on + strand, within BACOVA_02234 at 15.243 kb on + strand, within BACOVA_02234 at 15.291 kb on - strand, within BACOVA_02234 at 15.295 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.320 kb on - strand, within BACOVA_02234 at 15.405 kb on - strand, within BACOVA_02234 at 15.487 kb on - strand, within BACOVA_02234 at 15.493 kb on + strand, within BACOVA_02234 at 15.507 kb on - strand, within BACOVA_02234 at 15.507 kb on - strand, within BACOVA_02234 at 15.561 kb on - strand at 15.569 kb on - strand at 15.569 kb on - strand at 15.578 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.644 kb on + strand at 15.644 kb on + strand at 15.880 kb on - strand, within BACOVA_02236 at 15.889 kb on - strand, within BACOVA_02236
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 13,825 + +0.2 13,839 + +0.0 13,839 + +2.7 13,839 + +0.2 13,839 + -1.2 13,869 + -0.2 13,951 + BACOVA_02231 0.19 -1.0 13,956 + BACOVA_02231 0.20 +1.4 13,956 + BACOVA_02231 0.20 -0.7 13,957 - BACOVA_02231 0.20 -0.3 13,972 - BACOVA_02231 0.23 -0.1 14,003 - BACOVA_02231 0.28 +0.2 14,078 - BACOVA_02231 0.40 +0.2 14,087 + BACOVA_02231 0.42 -0.1 14,096 + BACOVA_02231 0.43 -0.9 14,119 + BACOVA_02231 0.47 +1.5 14,120 - BACOVA_02231 0.47 +0.8 14,133 - BACOVA_02231 0.50 -1.2 14,168 + BACOVA_02231 0.56 +1.3 14,241 + BACOVA_02231 0.68 -0.9 14,242 - BACOVA_02231 0.68 -0.1 14,271 - BACOVA_02231 0.73 -1.5 14,271 - BACOVA_02231 0.73 -1.3 14,273 - BACOVA_02231 0.73 -0.5 14,273 - BACOVA_02231 0.73 -0.5 14,289 - BACOVA_02231 0.76 -0.6 14,326 + BACOVA_02231 0.82 -0.2 14,327 - BACOVA_02231 0.82 -0.6 14,327 - BACOVA_02231 0.82 +2.7 14,422 + +1.1 14,436 + +0.1 14,476 + -0.4 14,507 + -0.5 14,539 + +2.0 14,543 - -0.5 14,545 + +1.2 14,546 - -1.6 14,546 - +1.4 14,568 + +0.4 14,569 - +1.2 14,671 + BACOVA_02232 0.28 -1.5 14,671 + BACOVA_02232 0.28 +1.1 14,673 + BACOVA_02232 0.29 -0.5 14,673 + BACOVA_02232 0.29 -0.2 14,677 - BACOVA_02232 0.32 -1.0 14,713 + BACOVA_02232 0.57 -2.1 14,714 - BACOVA_02232 0.58 -1.0 14,718 - BACOVA_02232 0.61 +0.6 14,718 - BACOVA_02232 0.61 +3.7 14,718 - BACOVA_02232 0.61 +1.4 14,718 - BACOVA_02232 0.61 -0.2 14,760 - -1.1 14,817 + BACOVA_02233 0.14 +1.2 14,872 - BACOVA_02233 0.67 -0.9 14,872 - BACOVA_02233 0.67 -1.1 14,883 + BACOVA_02233 0.77 +0.4 14,897 - -0.1 14,979 + +1.7 15,016 - +1.2 15,102 + BACOVA_02235 0.38 +0.6 15,157 - -3.8 15,160 - -2.9 15,162 - -0.9 15,162 - +0.4 15,188 + BACOVA_02234 0.10 -2.3 15,243 + BACOVA_02234 0.23 -1.5 15,291 - BACOVA_02234 0.34 -1.2 15,295 - BACOVA_02234 0.35 -0.8 15,300 - BACOVA_02234 0.36 -1.3 15,300 - BACOVA_02234 0.36 -0.1 15,300 - BACOVA_02234 0.36 -0.3 15,320 - BACOVA_02234 0.41 -0.6 15,405 - BACOVA_02234 0.61 -1.6 15,487 - BACOVA_02234 0.80 +0.9 15,493 + BACOVA_02234 0.82 +0.7 15,507 - BACOVA_02234 0.85 +0.4 15,507 - BACOVA_02234 0.85 -1.2 15,561 - -0.1 15,569 - -1.8 15,569 - -0.1 15,578 - +0.4 15,617 - -0.9 15,617 - -0.1 15,617 - -2.6 15,644 + +0.7 15,644 + -0.1 15,880 - BACOVA_02236 0.32 -0.5 15,889 - BACOVA_02236 0.33 -0.6
Or see this region's nucleotide sequence