Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01714 and BACOVA_01715 are separated by 25 nucleotides BACOVA_01715 and BACOVA_01716 are separated by 87 nucleotides BACOVA_01716 and BACOVA_01717 are separated by 180 nucleotides
BACOVA_01714: BACOVA_01714 - transporter, SSS family, at 138,870 to 140,564
_01714
BACOVA_01715: BACOVA_01715 - aldose 1-epimerase, at 140,590 to 141,729
_01715
BACOVA_01716: BACOVA_01716 - hypothetical protein, at 141,817 to 141,924
_01716
BACOVA_01717: BACOVA_01717 - carbohydrate binding domain protein, at 142,105 to 144,087
_01717
Position (kb) 140
141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 139.650 kb on + strand, within BACOVA_01714 at 139.650 kb on + strand, within BACOVA_01714 at 139.721 kb on + strand, within BACOVA_01714 at 139.725 kb on - strand, within BACOVA_01714 at 139.770 kb on + strand, within BACOVA_01714 at 139.884 kb on - strand, within BACOVA_01714 at 139.891 kb on + strand, within BACOVA_01714 at 139.900 kb on - strand, within BACOVA_01714 at 140.017 kb on + strand, within BACOVA_01714 at 140.018 kb on - strand, within BACOVA_01714 at 140.045 kb on + strand, within BACOVA_01714 at 140.049 kb on - strand, within BACOVA_01714 at 140.049 kb on - strand, within BACOVA_01714 at 140.051 kb on - strand, within BACOVA_01714 at 140.119 kb on - strand, within BACOVA_01714 at 140.139 kb on + strand, within BACOVA_01714 at 140.164 kb on - strand, within BACOVA_01714 at 140.182 kb on - strand, within BACOVA_01714 at 140.185 kb on + strand, within BACOVA_01714 at 140.185 kb on + strand, within BACOVA_01714 at 140.186 kb on - strand, within BACOVA_01714 at 140.190 kb on + strand, within BACOVA_01714 at 140.217 kb on - strand, within BACOVA_01714 at 140.234 kb on - strand, within BACOVA_01714 at 140.261 kb on + strand, within BACOVA_01714 at 140.262 kb on - strand, within BACOVA_01714 at 140.262 kb on - strand, within BACOVA_01714 at 140.262 kb on - strand, within BACOVA_01714 at 140.262 kb on - strand, within BACOVA_01714 at 140.262 kb on - strand, within BACOVA_01714 at 140.264 kb on - strand, within BACOVA_01714 at 140.264 kb on - strand, within BACOVA_01714 at 140.266 kb on - strand, within BACOVA_01714 at 140.281 kb on + strand, within BACOVA_01714 at 140.281 kb on + strand, within BACOVA_01714 at 140.282 kb on - strand, within BACOVA_01714 at 140.282 kb on - strand, within BACOVA_01714 at 140.295 kb on + strand, within BACOVA_01714 at 140.417 kb on + strand at 140.418 kb on - strand at 140.464 kb on + strand at 140.508 kb on - strand at 140.510 kb on + strand at 140.552 kb on - strand at 140.554 kb on - strand at 140.572 kb on - strand at 140.580 kb on + strand at 140.589 kb on - strand at 140.625 kb on + strand at 140.625 kb on + strand at 140.628 kb on + strand at 140.628 kb on + strand at 140.651 kb on - strand at 140.730 kb on - strand, within BACOVA_01715 at 140.736 kb on + strand, within BACOVA_01715 at 140.805 kb on + strand, within BACOVA_01715 at 140.809 kb on + strand, within BACOVA_01715 at 140.809 kb on + strand, within BACOVA_01715 at 140.809 kb on + strand, within BACOVA_01715 at 140.855 kb on - strand, within BACOVA_01715 at 140.901 kb on - strand, within BACOVA_01715 at 140.901 kb on - strand, within BACOVA_01715 at 140.949 kb on + strand, within BACOVA_01715 at 141.018 kb on + strand, within BACOVA_01715 at 141.024 kb on + strand, within BACOVA_01715 at 141.039 kb on + strand, within BACOVA_01715 at 141.039 kb on + strand, within BACOVA_01715 at 141.044 kb on + strand, within BACOVA_01715 at 141.059 kb on + strand, within BACOVA_01715 at 141.059 kb on + strand, within BACOVA_01715 at 141.059 kb on + strand, within BACOVA_01715 at 141.060 kb on - strand, within BACOVA_01715 at 141.064 kb on + strand, within BACOVA_01715 at 141.064 kb on + strand, within BACOVA_01715 at 141.065 kb on - strand, within BACOVA_01715 at 141.065 kb on - strand, within BACOVA_01715 at 141.065 kb on - strand, within BACOVA_01715 at 141.126 kb on + strand, within BACOVA_01715 at 141.127 kb on - strand, within BACOVA_01715 at 141.151 kb on - strand, within BACOVA_01715 at 141.161 kb on + strand, within BACOVA_01715 at 141.165 kb on + strand, within BACOVA_01715 at 141.305 kb on + strand, within BACOVA_01715 at 141.305 kb on + strand, within BACOVA_01715 at 141.305 kb on + strand, within BACOVA_01715 at 141.306 kb on - strand, within BACOVA_01715 at 141.423 kb on + strand, within BACOVA_01715 at 141.445 kb on + strand, within BACOVA_01715 at 141.453 kb on + strand, within BACOVA_01715 at 141.454 kb on - strand, within BACOVA_01715 at 141.454 kb on - strand, within BACOVA_01715 at 141.455 kb on + strand, within BACOVA_01715 at 141.455 kb on + strand, within BACOVA_01715 at 141.456 kb on - strand, within BACOVA_01715 at 141.456 kb on - strand, within BACOVA_01715 at 141.484 kb on + strand, within BACOVA_01715 at 141.498 kb on + strand, within BACOVA_01715 at 141.499 kb on - strand, within BACOVA_01715 at 141.532 kb on - strand, within BACOVA_01715 at 141.556 kb on + strand, within BACOVA_01715 at 141.557 kb on - strand, within BACOVA_01715 at 141.557 kb on - strand, within BACOVA_01715 at 141.557 kb on - strand, within BACOVA_01715 at 141.565 kb on - strand, within BACOVA_01715 at 141.580 kb on + strand, within BACOVA_01715 at 141.586 kb on - strand, within BACOVA_01715 at 141.586 kb on - strand, within BACOVA_01715 at 141.588 kb on - strand, within BACOVA_01715 at 141.830 kb on + strand, within BACOVA_01716 at 141.830 kb on + strand, within BACOVA_01716 at 141.839 kb on + strand, within BACOVA_01716 at 141.840 kb on - strand, within BACOVA_01716 at 141.864 kb on - strand, within BACOVA_01716 at 141.864 kb on - strand, within BACOVA_01716 at 141.871 kb on - strand, within BACOVA_01716 at 141.872 kb on + strand, within BACOVA_01716 at 141.906 kb on + strand, within BACOVA_01716 at 141.907 kb on - strand, within BACOVA_01716 at 142.020 kb on + strand at 142.020 kb on + strand at 142.021 kb on - strand at 142.076 kb on + strand at 142.081 kb on - strand at 142.082 kb on + strand at 142.085 kb on - strand at 142.115 kb on - strand at 142.136 kb on + strand at 142.146 kb on + strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.221 kb on + strand at 142.221 kb on + strand at 142.221 kb on + strand at 142.222 kb on - strand at 142.222 kb on - strand at 142.224 kb on + strand at 142.224 kb on + strand at 142.224 kb on + strand at 142.225 kb on - strand at 142.225 kb on - strand at 142.225 kb on - strand at 142.225 kb on - strand at 142.228 kb on + strand at 142.229 kb on - strand at 142.229 kb on - strand at 142.355 kb on + strand, within BACOVA_01717 at 142.356 kb on - strand, within BACOVA_01717 at 142.422 kb on + strand, within BACOVA_01717 at 142.422 kb on + strand, within BACOVA_01717 at 142.423 kb on - strand, within BACOVA_01717 at 142.423 kb on - strand, within BACOVA_01717 at 142.522 kb on - strand, within BACOVA_01717 at 142.551 kb on - strand, within BACOVA_01717 at 142.599 kb on + strand, within BACOVA_01717 at 142.611 kb on + strand, within BACOVA_01717 at 142.653 kb on + strand, within BACOVA_01717 at 142.653 kb on + strand, within BACOVA_01717 at 142.671 kb on - strand, within BACOVA_01717
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 139,650 + BACOVA_01714 0.46 -2.4 139,650 + BACOVA_01714 0.46 +1.5 139,721 + BACOVA_01714 0.50 -1.2 139,725 - BACOVA_01714 0.50 +1.2 139,770 + BACOVA_01714 0.53 -1.0 139,884 - BACOVA_01714 0.60 +1.7 139,891 + BACOVA_01714 0.60 -1.3 139,900 - BACOVA_01714 0.61 +0.7 140,017 + BACOVA_01714 0.68 +0.3 140,018 - BACOVA_01714 0.68 -1.3 140,045 + BACOVA_01714 0.69 -0.5 140,049 - BACOVA_01714 0.70 +0.8 140,049 - BACOVA_01714 0.70 +0.5 140,051 - BACOVA_01714 0.70 -0.7 140,119 - BACOVA_01714 0.74 -1.6 140,139 + BACOVA_01714 0.75 -0.2 140,164 - BACOVA_01714 0.76 +2.4 140,182 - BACOVA_01714 0.77 +0.3 140,185 + BACOVA_01714 0.78 -1.2 140,185 + BACOVA_01714 0.78 -2.1 140,186 - BACOVA_01714 0.78 +0.1 140,190 + BACOVA_01714 0.78 +2.5 140,217 - BACOVA_01714 0.79 -0.4 140,234 - BACOVA_01714 0.80 +1.1 140,261 + BACOVA_01714 0.82 -1.0 140,262 - BACOVA_01714 0.82 -0.0 140,262 - BACOVA_01714 0.82 +0.8 140,262 - BACOVA_01714 0.82 -0.5 140,262 - BACOVA_01714 0.82 +0.3 140,262 - BACOVA_01714 0.82 +0.0 140,264 - BACOVA_01714 0.82 -0.5 140,264 - BACOVA_01714 0.82 -1.0 140,266 - BACOVA_01714 0.82 +0.4 140,281 + BACOVA_01714 0.83 +0.5 140,281 + BACOVA_01714 0.83 -0.9 140,282 - BACOVA_01714 0.83 +0.3 140,282 - BACOVA_01714 0.83 -1.1 140,295 + BACOVA_01714 0.84 +0.3 140,417 + +2.7 140,418 - +2.7 140,464 + -1.0 140,508 - +0.2 140,510 + -1.7 140,552 - +0.4 140,554 - -0.8 140,572 - +2.0 140,580 + +1.1 140,589 - +2.2 140,625 + -2.9 140,625 + -1.3 140,628 + -0.7 140,628 + -0.6 140,651 - +0.1 140,730 - BACOVA_01715 0.12 -0.0 140,736 + BACOVA_01715 0.13 +0.2 140,805 + BACOVA_01715 0.19 +1.6 140,809 + BACOVA_01715 0.19 +3.7 140,809 + BACOVA_01715 0.19 -0.9 140,809 + BACOVA_01715 0.19 -0.7 140,855 - BACOVA_01715 0.23 -0.3 140,901 - BACOVA_01715 0.27 -0.7 140,901 - BACOVA_01715 0.27 -1.4 140,949 + BACOVA_01715 0.31 -0.8 141,018 + BACOVA_01715 0.38 -0.7 141,024 + BACOVA_01715 0.38 -2.5 141,039 + BACOVA_01715 0.39 -0.2 141,039 + BACOVA_01715 0.39 -1.4 141,044 + BACOVA_01715 0.40 +0.7 141,059 + BACOVA_01715 0.41 +0.5 141,059 + BACOVA_01715 0.41 +0.1 141,059 + BACOVA_01715 0.41 -1.9 141,060 - BACOVA_01715 0.41 +2.0 141,064 + BACOVA_01715 0.42 -0.8 141,064 + BACOVA_01715 0.42 -0.6 141,065 - BACOVA_01715 0.42 -0.3 141,065 - BACOVA_01715 0.42 +0.3 141,065 - BACOVA_01715 0.42 -2.1 141,126 + BACOVA_01715 0.47 +2.4 141,127 - BACOVA_01715 0.47 -1.0 141,151 - BACOVA_01715 0.49 -1.2 141,161 + BACOVA_01715 0.50 -0.3 141,165 + BACOVA_01715 0.50 +1.0 141,305 + BACOVA_01715 0.63 +1.1 141,305 + BACOVA_01715 0.63 -0.2 141,305 + BACOVA_01715 0.63 -0.6 141,306 - BACOVA_01715 0.63 -0.5 141,423 + BACOVA_01715 0.73 +0.1 141,445 + BACOVA_01715 0.75 -0.5 141,453 + BACOVA_01715 0.76 +0.5 141,454 - BACOVA_01715 0.76 -2.5 141,454 - BACOVA_01715 0.76 -1.3 141,455 + BACOVA_01715 0.76 -1.7 141,455 + BACOVA_01715 0.76 +2.6 141,456 - BACOVA_01715 0.76 +0.2 141,456 - BACOVA_01715 0.76 -1.0 141,484 + BACOVA_01715 0.78 -0.2 141,498 + BACOVA_01715 0.80 +0.2 141,499 - BACOVA_01715 0.80 +0.5 141,532 - BACOVA_01715 0.83 -1.9 141,556 + BACOVA_01715 0.85 -3.5 141,557 - BACOVA_01715 0.85 -0.8 141,557 - BACOVA_01715 0.85 -0.9 141,557 - BACOVA_01715 0.85 -0.4 141,565 - BACOVA_01715 0.86 -0.1 141,580 + BACOVA_01715 0.87 +2.3 141,586 - BACOVA_01715 0.87 -0.9 141,586 - BACOVA_01715 0.87 +0.5 141,588 - BACOVA_01715 0.88 +0.0 141,830 + BACOVA_01716 0.12 -1.3 141,830 + BACOVA_01716 0.12 -1.1 141,839 + BACOVA_01716 0.20 +0.5 141,840 - BACOVA_01716 0.21 -0.3 141,864 - BACOVA_01716 0.44 -1.5 141,864 - BACOVA_01716 0.44 -1.3 141,871 - BACOVA_01716 0.50 -2.0 141,872 + BACOVA_01716 0.51 -1.0 141,906 + BACOVA_01716 0.82 -0.9 141,907 - BACOVA_01716 0.83 -0.7 142,020 + +0.1 142,020 + +2.1 142,021 - -0.9 142,076 + +0.5 142,081 - -1.2 142,082 + -0.3 142,085 - -1.5 142,115 - -1.4 142,136 + -0.7 142,146 + +2.4 142,147 - -0.1 142,147 - +0.3 142,221 + -0.4 142,221 + +0.0 142,221 + -0.8 142,222 - -1.0 142,222 - -0.7 142,224 + +0.8 142,224 + -0.8 142,224 + +0.7 142,225 - -0.0 142,225 - +2.1 142,225 - +1.5 142,225 - +1.1 142,228 + -0.3 142,229 - -1.2 142,229 - +0.2 142,355 + BACOVA_01717 0.13 +0.2 142,356 - BACOVA_01717 0.13 +1.9 142,422 + BACOVA_01717 0.16 +0.3 142,422 + BACOVA_01717 0.16 +0.2 142,423 - BACOVA_01717 0.16 -0.4 142,423 - BACOVA_01717 0.16 -1.0 142,522 - BACOVA_01717 0.21 -1.2 142,551 - BACOVA_01717 0.22 -0.3 142,599 + BACOVA_01717 0.25 +1.0 142,611 + BACOVA_01717 0.26 -1.3 142,653 + BACOVA_01717 0.28 -1.2 142,653 + BACOVA_01717 0.28 -0.6 142,671 - BACOVA_01717 0.29 +0.1
Or see this region's nucleotide sequence