Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01664

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01663 and BACOVA_01664 are separated by 41 nucleotidesBACOVA_01664 and BACOVA_01665 are separated by 15 nucleotides BACOVA_01663: BACOVA_01663 - hypothetical protein, at 71,589 to 72,812 _01663 BACOVA_01664: BACOVA_01664 - hypothetical protein, at 72,854 to 74,278 _01664 BACOVA_01665: BACOVA_01665 - IPT/TIG domain protein, at 74,294 to 75,808 _01665 Position (kb) 72 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2 3at 71.859 kb on + strand, within BACOVA_01663at 71.859 kb on + strand, within BACOVA_01663at 71.860 kb on - strand, within BACOVA_01663at 71.879 kb on + strand, within BACOVA_01663at 71.880 kb on - strand, within BACOVA_01663at 71.889 kb on - strand, within BACOVA_01663at 71.892 kb on + strand, within BACOVA_01663at 71.893 kb on - strand, within BACOVA_01663at 72.029 kb on + strand, within BACOVA_01663at 72.029 kb on + strand, within BACOVA_01663at 72.030 kb on - strand, within BACOVA_01663at 72.044 kb on - strand, within BACOVA_01663at 72.073 kb on + strand, within BACOVA_01663at 72.074 kb on - strand, within BACOVA_01663at 72.081 kb on - strand, within BACOVA_01663at 72.144 kb on + strand, within BACOVA_01663at 72.144 kb on + strand, within BACOVA_01663at 72.248 kb on + strand, within BACOVA_01663at 72.249 kb on - strand, within BACOVA_01663at 72.252 kb on + strand, within BACOVA_01663at 72.253 kb on - strand, within BACOVA_01663at 72.262 kb on + strand, within BACOVA_01663at 72.263 kb on - strand, within BACOVA_01663at 72.282 kb on - strand, within BACOVA_01663at 72.282 kb on - strand, within BACOVA_01663at 72.284 kb on + strand, within BACOVA_01663at 72.307 kb on + strand, within BACOVA_01663at 72.383 kb on - strand, within BACOVA_01663at 72.431 kb on + strand, within BACOVA_01663at 72.467 kb on + strand, within BACOVA_01663at 72.486 kb on + strand, within BACOVA_01663at 72.487 kb on - strand, within BACOVA_01663at 72.504 kb on - strand, within BACOVA_01663at 72.506 kb on - strand, within BACOVA_01663at 72.545 kb on - strand, within BACOVA_01663at 72.545 kb on - strand, within BACOVA_01663at 72.562 kb on + strand, within BACOVA_01663at 72.617 kb on - strand, within BACOVA_01663at 72.652 kb on - strand, within BACOVA_01663at 72.662 kb on - strand, within BACOVA_01663at 72.673 kb on + strand, within BACOVA_01663at 72.820 kb on + strandat 72.820 kb on + strandat 72.821 kb on - strandat 72.821 kb on - strandat 72.821 kb on - strandat 72.843 kb on + strandat 72.848 kb on + strandat 72.848 kb on + strandat 72.849 kb on - strandat 72.869 kb on + strandat 72.869 kb on + strandat 72.870 kb on - strandat 72.877 kb on + strandat 72.910 kb on + strandat 72.961 kb on - strandat 72.961 kb on - strandat 72.961 kb on - strandat 72.963 kb on + strandat 73.040 kb on - strand, within BACOVA_01664at 73.134 kb on + strand, within BACOVA_01664at 73.135 kb on - strand, within BACOVA_01664at 73.135 kb on - strand, within BACOVA_01664at 73.135 kb on - strand, within BACOVA_01664at 73.196 kb on - strand, within BACOVA_01664at 73.237 kb on + strand, within BACOVA_01664at 73.237 kb on + strand, within BACOVA_01664at 73.240 kb on + strand, within BACOVA_01664at 73.241 kb on - strand, within BACOVA_01664at 73.267 kb on + strand, within BACOVA_01664at 73.268 kb on - strand, within BACOVA_01664at 73.371 kb on + strand, within BACOVA_01664at 73.371 kb on + strand, within BACOVA_01664at 73.382 kb on - strand, within BACOVA_01664at 73.400 kb on + strand, within BACOVA_01664at 73.454 kb on + strand, within BACOVA_01664at 73.458 kb on - strand, within BACOVA_01664at 73.458 kb on - strand, within BACOVA_01664at 73.574 kb on - strand, within BACOVA_01664at 73.646 kb on - strand, within BACOVA_01664at 73.646 kb on - strand, within BACOVA_01664at 73.685 kb on + strand, within BACOVA_01664at 73.697 kb on - strand, within BACOVA_01664at 73.707 kb on + strand, within BACOVA_01664at 73.712 kb on - strand, within BACOVA_01664at 73.775 kb on - strand, within BACOVA_01664at 73.831 kb on + strand, within BACOVA_01664at 73.834 kb on + strand, within BACOVA_01664at 73.847 kb on - strand, within BACOVA_01664at 73.847 kb on - strand, within BACOVA_01664at 73.847 kb on - strand, within BACOVA_01664at 73.870 kb on + strand, within BACOVA_01664at 73.871 kb on - strand, within BACOVA_01664at 73.892 kb on + strand, within BACOVA_01664at 73.892 kb on + strand, within BACOVA_01664at 73.892 kb on + strand, within BACOVA_01664at 73.893 kb on - strand, within BACOVA_01664at 73.962 kb on + strand, within BACOVA_01664at 73.982 kb on - strand, within BACOVA_01664at 74.122 kb on + strand, within BACOVA_01664at 74.123 kb on - strand, within BACOVA_01664at 74.156 kb on - strandat 74.215 kb on - strandat 74.225 kb on + strandat 74.225 kb on + strandat 74.307 kb on + strandat 74.369 kb on + strandat 74.387 kb on - strandat 74.387 kb on - strandat 74.449 kb on - strand, within BACOVA_01665at 74.449 kb on - strand, within BACOVA_01665at 74.451 kb on - strand, within BACOVA_01665at 74.451 kb on - strand, within BACOVA_01665at 74.453 kb on - strand, within BACOVA_01665at 74.453 kb on - strand, within BACOVA_01665at 74.524 kb on + strand, within BACOVA_01665at 74.525 kb on - strand, within BACOVA_01665at 74.591 kb on - strand, within BACOVA_01665at 74.634 kb on - strand, within BACOVA_01665at 74.653 kb on + strand, within BACOVA_01665at 74.659 kb on + strand, within BACOVA_01665at 74.695 kb on + strand, within BACOVA_01665at 74.731 kb on + strand, within BACOVA_01665at 74.794 kb on + strand, within BACOVA_01665at 74.875 kb on + strand, within BACOVA_01665at 74.876 kb on - strand, within BACOVA_01665at 74.890 kb on + strand, within BACOVA_01665at 74.956 kb on + strand, within BACOVA_01665at 74.957 kb on - strand, within BACOVA_01665at 74.960 kb on + strand, within BACOVA_01665at 74.960 kb on + strand, within BACOVA_01665at 74.964 kb on + strand, within BACOVA_01665at 74.964 kb on + strand, within BACOVA_01665at 75.004 kb on - strand, within BACOVA_01665at 75.004 kb on - strand, within BACOVA_01665at 75.004 kb on - strand, within BACOVA_01665at 75.028 kb on + strand, within BACOVA_01665at 75.028 kb on + strand, within BACOVA_01665at 75.029 kb on - strand, within BACOVA_01665at 75.029 kb on - strand, within BACOVA_01665at 75.029 kb on - strand, within BACOVA_01665at 75.060 kb on - strand, within BACOVA_01665at 75.157 kb on + strand, within BACOVA_01665at 75.158 kb on - strand, within BACOVA_01665at 75.262 kb on + strand, within BACOVA_01665at 75.273 kb on + strand, within BACOVA_01665

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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71,859 + BACOVA_01663 0.22 +1.7
71,859 + BACOVA_01663 0.22 +1.7
71,860 - BACOVA_01663 0.22 +0.1
71,879 + BACOVA_01663 0.24 +0.3
71,880 - BACOVA_01663 0.24 -0.5
71,889 - BACOVA_01663 0.25 -1.7
71,892 + BACOVA_01663 0.25 +0.4
71,893 - BACOVA_01663 0.25 +0.2
72,029 + BACOVA_01663 0.36 -1.1
72,029 + BACOVA_01663 0.36 -0.7
72,030 - BACOVA_01663 0.36 -1.2
72,044 - BACOVA_01663 0.37 +0.4
72,073 + BACOVA_01663 0.40 -1.1
72,074 - BACOVA_01663 0.40 +0.1
72,081 - BACOVA_01663 0.40 +1.8
72,144 + BACOVA_01663 0.45 +2.3
72,144 + BACOVA_01663 0.45 -0.9
72,248 + BACOVA_01663 0.54 +0.2
72,249 - BACOVA_01663 0.54 -0.9
72,252 + BACOVA_01663 0.54 -0.7
72,253 - BACOVA_01663 0.54 +0.5
72,262 + BACOVA_01663 0.55 -0.9
72,263 - BACOVA_01663 0.55 +2.6
72,282 - BACOVA_01663 0.57 -1.4
72,282 - BACOVA_01663 0.57 -0.5
72,284 + BACOVA_01663 0.57 -0.3
72,307 + BACOVA_01663 0.59 +0.5
72,383 - BACOVA_01663 0.65 -0.3
72,431 + BACOVA_01663 0.69 +1.4
72,467 + BACOVA_01663 0.72 -1.8
72,486 + BACOVA_01663 0.73 -0.5
72,487 - BACOVA_01663 0.73 -0.8
72,504 - BACOVA_01663 0.75 -0.4
72,506 - BACOVA_01663 0.75 -0.3
72,545 - BACOVA_01663 0.78 -2.1
72,545 - BACOVA_01663 0.78 -2.2
72,562 + BACOVA_01663 0.79 +0.9
72,617 - BACOVA_01663 0.84 -1.8
72,652 - BACOVA_01663 0.87 -0.2
72,662 - BACOVA_01663 0.88 +0.5
72,673 + BACOVA_01663 0.89 +2.4
72,820 + +1.7
72,820 + +0.2
72,821 - -0.7
72,821 - +0.6
72,821 - +1.4
72,843 + -2.3
72,848 + +2.9
72,848 + -0.7
72,849 - +0.1
72,869 + +1.8
72,869 + -0.9
72,870 - +0.8
72,877 + -0.7
72,910 + +0.1
72,961 - +0.3
72,961 - -1.7
72,961 - -1.2
72,963 + -0.3
73,040 - BACOVA_01664 0.13 -0.9
73,134 + BACOVA_01664 0.20 +0.1
73,135 - BACOVA_01664 0.20 +0.5
73,135 - BACOVA_01664 0.20 -0.5
73,135 - BACOVA_01664 0.20 +0.1
73,196 - BACOVA_01664 0.24 -1.7
73,237 + BACOVA_01664 0.27 -0.2
73,237 + BACOVA_01664 0.27 -0.2
73,240 + BACOVA_01664 0.27 -0.9
73,241 - BACOVA_01664 0.27 -0.5
73,267 + BACOVA_01664 0.29 +0.1
73,268 - BACOVA_01664 0.29 +1.2
73,371 + BACOVA_01664 0.36 +1.5
73,371 + BACOVA_01664 0.36 +0.3
73,382 - BACOVA_01664 0.37 -0.5
73,400 + BACOVA_01664 0.38 -0.0
73,454 + BACOVA_01664 0.42 +1.3
73,458 - BACOVA_01664 0.42 +0.4
73,458 - BACOVA_01664 0.42 -0.8
73,574 - BACOVA_01664 0.51 +0.5
73,646 - BACOVA_01664 0.56 -0.2
73,646 - BACOVA_01664 0.56 +0.1
73,685 + BACOVA_01664 0.58 +2.4
73,697 - BACOVA_01664 0.59 +0.1
73,707 + BACOVA_01664 0.60 +1.1
73,712 - BACOVA_01664 0.60 -1.1
73,775 - BACOVA_01664 0.65 -1.3
73,831 + BACOVA_01664 0.69 -0.8
73,834 + BACOVA_01664 0.69 +1.8
73,847 - BACOVA_01664 0.70 +0.0
73,847 - BACOVA_01664 0.70 +1.0
73,847 - BACOVA_01664 0.70 +0.4
73,870 + BACOVA_01664 0.71 -0.9
73,871 - BACOVA_01664 0.71 +0.1
73,892 + BACOVA_01664 0.73 -0.9
73,892 + BACOVA_01664 0.73 +0.3
73,892 + BACOVA_01664 0.73 -0.4
73,893 - BACOVA_01664 0.73 -1.0
73,962 + BACOVA_01664 0.78 -0.2
73,982 - BACOVA_01664 0.79 +0.7
74,122 + BACOVA_01664 0.89 -0.8
74,123 - BACOVA_01664 0.89 +1.2
74,156 - +1.7
74,215 - +1.3
74,225 + +0.1
74,225 + +1.6
74,307 + -1.2
74,369 + -0.6
74,387 - +1.2
74,387 - -1.9
74,449 - BACOVA_01665 0.10 -0.2
74,449 - BACOVA_01665 0.10 +0.7
74,451 - BACOVA_01665 0.10 -1.0
74,451 - BACOVA_01665 0.10 -0.2
74,453 - BACOVA_01665 0.10 -1.3
74,453 - BACOVA_01665 0.10 +1.0
74,524 + BACOVA_01665 0.15 +1.2
74,525 - BACOVA_01665 0.15 -0.7
74,591 - BACOVA_01665 0.20 +0.2
74,634 - BACOVA_01665 0.22 +0.7
74,653 + BACOVA_01665 0.24 -0.9
74,659 + BACOVA_01665 0.24 -0.1
74,695 + BACOVA_01665 0.26 +1.0
74,731 + BACOVA_01665 0.29 +1.2
74,794 + BACOVA_01665 0.33 +0.2
74,875 + BACOVA_01665 0.38 +0.8
74,876 - BACOVA_01665 0.38 -0.6
74,890 + BACOVA_01665 0.39 +0.5
74,956 + BACOVA_01665 0.44 -1.2
74,957 - BACOVA_01665 0.44 +0.8
74,960 + BACOVA_01665 0.44 +0.6
74,960 + BACOVA_01665 0.44 -1.2
74,964 + BACOVA_01665 0.44 -1.9
74,964 + BACOVA_01665 0.44 +1.0
75,004 - BACOVA_01665 0.47 +0.5
75,004 - BACOVA_01665 0.47 +1.5
75,004 - BACOVA_01665 0.47 -2.0
75,028 + BACOVA_01665 0.48 -0.2
75,028 + BACOVA_01665 0.48 -1.0
75,029 - BACOVA_01665 0.49 -0.2
75,029 - BACOVA_01665 0.49 -0.5
75,029 - BACOVA_01665 0.49 +0.1
75,060 - BACOVA_01665 0.51 -1.0
75,157 + BACOVA_01665 0.57 +0.3
75,158 - BACOVA_01665 0.57 -0.3
75,262 + BACOVA_01665 0.64 -1.1
75,273 + BACOVA_01665 0.65 +0.3

Or see this region's nucleotide sequence