Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01545

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01544 and BACOVA_01545 are separated by 17 nucleotidesBACOVA_01545 and BACOVA_01546 are separated by 52 nucleotidesBACOVA_01546 and BACOVA_01547 overlap by 23 nucleotidesBACOVA_01547 and BACOVA_01548 are separated by 49 nucleotides BACOVA_01544: BACOVA_01544 - Fibrobacter succinogene major paralogous domain protein, at 44,469 to 46,520 _01544 BACOVA_01545: BACOVA_01545 - hypothetical protein, at 46,538 to 47,362 _01545 BACOVA_01546: BACOVA_01546 - hypothetical protein, at 47,415 to 47,666 _01546 BACOVA_01547: BACOVA_01547 - hypothetical protein, at 47,644 to 47,760 _01547 BACOVA_01548: BACOVA_01548 - hypothetical protein, at 47,810 to 49,384 _01548 Position (kb) 46 47 48Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 45.538 kb on - strand, within BACOVA_01544at 45.606 kb on + strand, within BACOVA_01544at 45.624 kb on - strand, within BACOVA_01544at 45.659 kb on + strand, within BACOVA_01544at 45.676 kb on - strand, within BACOVA_01544at 45.681 kb on + strand, within BACOVA_01544at 45.686 kb on + strand, within BACOVA_01544at 45.687 kb on - strand, within BACOVA_01544at 45.687 kb on - strand, within BACOVA_01544at 45.705 kb on + strand, within BACOVA_01544at 45.706 kb on - strand, within BACOVA_01544at 45.716 kb on + strand, within BACOVA_01544at 45.824 kb on + strand, within BACOVA_01544at 45.844 kb on + strand, within BACOVA_01544at 45.845 kb on - strand, within BACOVA_01544at 45.912 kb on + strand, within BACOVA_01544at 45.913 kb on - strand, within BACOVA_01544at 45.952 kb on + strand, within BACOVA_01544at 45.953 kb on - strand, within BACOVA_01544at 45.953 kb on - strand, within BACOVA_01544at 46.042 kb on + strand, within BACOVA_01544at 46.042 kb on + strand, within BACOVA_01544at 46.067 kb on + strand, within BACOVA_01544at 46.069 kb on + strand, within BACOVA_01544at 46.094 kb on + strand, within BACOVA_01544at 46.095 kb on - strand, within BACOVA_01544at 46.164 kb on + strand, within BACOVA_01544at 46.167 kb on - strand, within BACOVA_01544at 46.175 kb on + strand, within BACOVA_01544at 46.197 kb on + strand, within BACOVA_01544at 46.207 kb on + strand, within BACOVA_01544at 46.253 kb on + strand, within BACOVA_01544at 46.254 kb on - strand, within BACOVA_01544at 46.254 kb on - strand, within BACOVA_01544at 46.255 kb on + strand, within BACOVA_01544at 46.255 kb on + strand, within BACOVA_01544at 46.256 kb on - strand, within BACOVA_01544at 46.288 kb on + strand, within BACOVA_01544at 46.291 kb on + strand, within BACOVA_01544at 46.325 kb on - strandat 46.397 kb on + strandat 46.494 kb on + strandat 46.494 kb on + strandat 46.494 kb on + strandat 46.496 kb on + strandat 46.497 kb on - strandat 46.497 kb on - strandat 46.498 kb on + strandat 46.508 kb on - strandat 46.508 kb on - strandat 46.508 kb on - strandat 46.564 kb on + strandat 46.608 kb on - strandat 46.696 kb on + strand, within BACOVA_01545at 46.697 kb on - strand, within BACOVA_01545at 46.707 kb on + strand, within BACOVA_01545at 46.843 kb on - strand, within BACOVA_01545at 46.845 kb on + strand, within BACOVA_01545at 46.858 kb on + strand, within BACOVA_01545at 46.896 kb on + strand, within BACOVA_01545at 46.897 kb on - strand, within BACOVA_01545at 46.987 kb on + strand, within BACOVA_01545at 46.987 kb on + strand, within BACOVA_01545at 46.988 kb on - strand, within BACOVA_01545at 47.086 kb on + strand, within BACOVA_01545at 47.086 kb on + strand, within BACOVA_01545at 47.087 kb on - strand, within BACOVA_01545at 47.208 kb on + strand, within BACOVA_01545at 47.208 kb on + strand, within BACOVA_01545at 47.366 kb on - strandat 47.368 kb on - strandat 47.368 kb on - strandat 47.388 kb on + strandat 47.448 kb on - strand, within BACOVA_01546at 47.466 kb on + strand, within BACOVA_01546at 47.512 kb on + strand, within BACOVA_01546at 47.512 kb on + strand, within BACOVA_01546at 47.513 kb on - strand, within BACOVA_01546at 47.518 kb on - strand, within BACOVA_01546at 47.529 kb on + strand, within BACOVA_01546at 47.547 kb on + strand, within BACOVA_01546at 47.548 kb on - strand, within BACOVA_01546at 47.550 kb on - strand, within BACOVA_01546at 47.550 kb on - strand, within BACOVA_01546at 47.552 kb on - strand, within BACOVA_01546at 47.552 kb on - strand, within BACOVA_01546at 47.589 kb on - strand, within BACOVA_01546at 47.626 kb on - strand, within BACOVA_01546at 47.658 kb on + strandat 47.771 kb on + strandat 47.800 kb on - strandat 47.801 kb on + strandat 47.801 kb on + strandat 47.802 kb on - strandat 47.812 kb on - strandat 47.812 kb on - strandat 47.837 kb on - strandat 47.855 kb on - strandat 47.862 kb on - strandat 47.872 kb on - strandat 48.062 kb on - strand, within BACOVA_01548at 48.062 kb on - strand, within BACOVA_01548at 48.062 kb on - strand, within BACOVA_01548at 48.067 kb on - strand, within BACOVA_01548at 48.072 kb on - strand, within BACOVA_01548at 48.087 kb on + strand, within BACOVA_01548at 48.099 kb on - strand, within BACOVA_01548at 48.170 kb on - strand, within BACOVA_01548at 48.172 kb on + strand, within BACOVA_01548at 48.172 kb on + strand, within BACOVA_01548at 48.173 kb on - strand, within BACOVA_01548at 48.175 kb on + strand, within BACOVA_01548at 48.175 kb on + strand, within BACOVA_01548at 48.228 kb on - strand, within BACOVA_01548at 48.230 kb on - strand, within BACOVA_01548at 48.237 kb on + strand, within BACOVA_01548at 48.260 kb on + strand, within BACOVA_01548at 48.286 kb on + strand, within BACOVA_01548at 48.287 kb on - strand, within BACOVA_01548at 48.307 kb on + strand, within BACOVA_01548at 48.309 kb on + strand, within BACOVA_01548at 48.309 kb on + strand, within BACOVA_01548at 48.309 kb on + strand, within BACOVA_01548at 48.309 kb on + strand, within BACOVA_01548at 48.310 kb on - strand, within BACOVA_01548at 48.310 kb on - strand, within BACOVA_01548at 48.310 kb on - strand, within BACOVA_01548at 48.310 kb on - strand, within BACOVA_01548at 48.311 kb on + strand, within BACOVA_01548at 48.311 kb on + strand, within BACOVA_01548at 48.311 kb on + strand, within BACOVA_01548at 48.312 kb on - strand, within BACOVA_01548at 48.315 kb on - strand, within BACOVA_01548at 48.315 kb on - strand, within BACOVA_01548

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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45,538 - BACOVA_01544 0.52 +0.3
45,606 + BACOVA_01544 0.55 -0.3
45,624 - BACOVA_01544 0.56 +1.2
45,659 + BACOVA_01544 0.58 -2.4
45,676 - BACOVA_01544 0.59 +0.8
45,681 + BACOVA_01544 0.59 -0.8
45,686 + BACOVA_01544 0.59 -1.1
45,687 - BACOVA_01544 0.59 -0.7
45,687 - BACOVA_01544 0.59 +0.1
45,705 + BACOVA_01544 0.60 -0.7
45,706 - BACOVA_01544 0.60 -0.2
45,716 + BACOVA_01544 0.61 -1.0
45,824 + BACOVA_01544 0.66 -1.0
45,844 + BACOVA_01544 0.67 +1.4
45,845 - BACOVA_01544 0.67 +0.6
45,912 + BACOVA_01544 0.70 +0.9
45,913 - BACOVA_01544 0.70 +1.5
45,952 + BACOVA_01544 0.72 -0.6
45,953 - BACOVA_01544 0.72 +1.5
45,953 - BACOVA_01544 0.72 +3.1
46,042 + BACOVA_01544 0.77 -0.2
46,042 + BACOVA_01544 0.77 +0.2
46,067 + BACOVA_01544 0.78 +1.3
46,069 + BACOVA_01544 0.78 -1.0
46,094 + BACOVA_01544 0.79 -1.7
46,095 - BACOVA_01544 0.79 +1.3
46,164 + BACOVA_01544 0.83 +0.8
46,167 - BACOVA_01544 0.83 +2.2
46,175 + BACOVA_01544 0.83 +0.3
46,197 + BACOVA_01544 0.84 +2.2
46,207 + BACOVA_01544 0.85 +0.2
46,253 + BACOVA_01544 0.87 +0.5
46,254 - BACOVA_01544 0.87 -0.9
46,254 - BACOVA_01544 0.87 +0.9
46,255 + BACOVA_01544 0.87 -1.4
46,255 + BACOVA_01544 0.87 -0.8
46,256 - BACOVA_01544 0.87 +0.1
46,288 + BACOVA_01544 0.89 -0.6
46,291 + BACOVA_01544 0.89 -1.1
46,325 - +0.0
46,397 + -0.5
46,494 + +0.4
46,494 + +1.1
46,494 + -0.4
46,496 + +0.7
46,497 - -0.1
46,497 - +0.4
46,498 + -0.5
46,508 - +2.3
46,508 - +1.2
46,508 - +3.1
46,564 + -0.3
46,608 - +1.7
46,696 + BACOVA_01545 0.19 +2.4
46,697 - BACOVA_01545 0.19 +0.8
46,707 + BACOVA_01545 0.20 -2.7
46,843 - BACOVA_01545 0.37 +0.4
46,845 + BACOVA_01545 0.37 +0.4
46,858 + BACOVA_01545 0.39 +2.6
46,896 + BACOVA_01545 0.43 +0.4
46,897 - BACOVA_01545 0.44 +1.0
46,987 + BACOVA_01545 0.54 -0.5
46,987 + BACOVA_01545 0.54 -1.4
46,988 - BACOVA_01545 0.55 +1.5
47,086 + BACOVA_01545 0.66 -0.5
47,086 + BACOVA_01545 0.66 -2.1
47,087 - BACOVA_01545 0.67 +1.8
47,208 + BACOVA_01545 0.81 +1.1
47,208 + BACOVA_01545 0.81 +1.0
47,366 - +3.0
47,368 - +1.5
47,368 - +0.5
47,388 + +1.2
47,448 - BACOVA_01546 0.13 +0.4
47,466 + BACOVA_01546 0.20 +0.2
47,512 + BACOVA_01546 0.38 -0.6
47,512 + BACOVA_01546 0.38 -4.4
47,513 - BACOVA_01546 0.39 +1.1
47,518 - BACOVA_01546 0.41 +0.9
47,529 + BACOVA_01546 0.45 -0.6
47,547 + BACOVA_01546 0.52 -3.1
47,548 - BACOVA_01546 0.53 +1.4
47,550 - BACOVA_01546 0.54 +0.6
47,550 - BACOVA_01546 0.54 +0.2
47,552 - BACOVA_01546 0.54 +0.9
47,552 - BACOVA_01546 0.54 +0.9
47,589 - BACOVA_01546 0.69 -0.8
47,626 - BACOVA_01546 0.84 -0.3
47,658 + +0.4
47,771 + +2.7
47,800 - +1.2
47,801 + -2.0
47,801 + +1.8
47,802 - +0.4
47,812 - +0.7
47,812 - +1.7
47,837 - +3.7
47,855 - +2.6
47,862 - +4.3
47,872 - -0.8
48,062 - BACOVA_01548 0.16 -0.1
48,062 - BACOVA_01548 0.16 +0.5
48,062 - BACOVA_01548 0.16 +0.4
48,067 - BACOVA_01548 0.16 +1.1
48,072 - BACOVA_01548 0.17 -1.0
48,087 + BACOVA_01548 0.18 +0.6
48,099 - BACOVA_01548 0.18 -0.4
48,170 - BACOVA_01548 0.23 +2.3
48,172 + BACOVA_01548 0.23 +0.5
48,172 + BACOVA_01548 0.23 -0.3
48,173 - BACOVA_01548 0.23 +2.5
48,175 + BACOVA_01548 0.23 +2.6
48,175 + BACOVA_01548 0.23 +0.6
48,228 - BACOVA_01548 0.27 +1.4
48,230 - BACOVA_01548 0.27 +1.4
48,237 + BACOVA_01548 0.27 +1.0
48,260 + BACOVA_01548 0.29 -0.1
48,286 + BACOVA_01548 0.30 +0.5
48,287 - BACOVA_01548 0.30 -0.6
48,307 + BACOVA_01548 0.32 -1.7
48,309 + BACOVA_01548 0.32 +0.7
48,309 + BACOVA_01548 0.32 +0.8
48,309 + BACOVA_01548 0.32 +0.1
48,309 + BACOVA_01548 0.32 -0.2
48,310 - BACOVA_01548 0.32 -0.2
48,310 - BACOVA_01548 0.32 +2.1
48,310 - BACOVA_01548 0.32 -0.0
48,310 - BACOVA_01548 0.32 -1.7
48,311 + BACOVA_01548 0.32 +0.4
48,311 + BACOVA_01548 0.32 +0.2
48,311 + BACOVA_01548 0.32 +0.7
48,312 - BACOVA_01548 0.32 +2.1
48,315 - BACOVA_01548 0.32 +2.4
48,315 - BACOVA_01548 0.32 -0.2

Or see this region's nucleotide sequence