Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01475

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01474 and BACOVA_01475 are separated by 312 nucleotidesBACOVA_01475 and BACOVA_01476 are separated by 122 nucleotides BACOVA_01474: BACOVA_01474 - hypothetical protein, at 130,275 to 131,213 _01474 BACOVA_01475: BACOVA_01475 - cupin domain protein, at 131,526 to 131,852 _01475 BACOVA_01476: BACOVA_01476 - hypothetical protein, at 131,975 to 132,844 _01476 Position (kb) 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 130.529 kb on + strand, within BACOVA_01474at 130.569 kb on - strand, within BACOVA_01474at 130.569 kb on - strand, within BACOVA_01474at 130.591 kb on - strand, within BACOVA_01474at 130.591 kb on - strand, within BACOVA_01474at 130.600 kb on - strand, within BACOVA_01474at 130.612 kb on - strand, within BACOVA_01474at 130.623 kb on - strand, within BACOVA_01474at 130.623 kb on - strand, within BACOVA_01474at 130.623 kb on - strand, within BACOVA_01474at 130.632 kb on + strand, within BACOVA_01474at 130.632 kb on + strand, within BACOVA_01474at 130.684 kb on - strand, within BACOVA_01474at 130.753 kb on - strand, within BACOVA_01474at 130.753 kb on - strand, within BACOVA_01474at 130.766 kb on + strand, within BACOVA_01474at 130.974 kb on - strand, within BACOVA_01474at 130.990 kb on + strand, within BACOVA_01474at 130.993 kb on + strand, within BACOVA_01474at 130.993 kb on + strand, within BACOVA_01474at 130.993 kb on + strand, within BACOVA_01474at 130.994 kb on - strand, within BACOVA_01474at 130.999 kb on + strand, within BACOVA_01474at 131.071 kb on - strand, within BACOVA_01474at 131.114 kb on - strand, within BACOVA_01474at 131.127 kb on + strandat 131.130 kb on + strandat 131.130 kb on + strandat 131.130 kb on + strandat 131.130 kb on + strandat 131.131 kb on - strandat 131.134 kb on + strandat 131.144 kb on + strandat 131.183 kb on + strandat 131.184 kb on - strandat 131.208 kb on + strandat 131.213 kb on + strandat 131.214 kb on - strandat 131.214 kb on - strandat 131.214 kb on - strandat 131.269 kb on + strandat 131.275 kb on + strandat 131.275 kb on + strandat 131.276 kb on - strandat 131.279 kb on + strandat 131.280 kb on - strandat 131.280 kb on - strandat 131.362 kb on - strandat 131.374 kb on - strandat 131.374 kb on - strandat 131.374 kb on - strandat 131.374 kb on - strandat 131.376 kb on + strandat 131.417 kb on + strandat 131.417 kb on + strandat 131.417 kb on + strandat 131.417 kb on + strandat 131.417 kb on + strandat 131.417 kb on + strandat 131.417 kb on + strandat 131.417 kb on + strandat 131.418 kb on - strandat 131.418 kb on - strandat 131.430 kb on + strandat 131.430 kb on + strandat 131.431 kb on - strandat 131.431 kb on - strandat 131.447 kb on - strandat 131.459 kb on + strandat 131.459 kb on + strandat 131.555 kb on + strandat 131.648 kb on + strand, within BACOVA_01475at 131.651 kb on + strand, within BACOVA_01475at 131.795 kb on + strand, within BACOVA_01475at 131.796 kb on - strand, within BACOVA_01475at 131.796 kb on - strand, within BACOVA_01475at 131.797 kb on + strand, within BACOVA_01475at 131.798 kb on - strand, within BACOVA_01475at 131.873 kb on - strandat 131.875 kb on + strandat 131.876 kb on - strandat 131.880 kb on + strandat 131.880 kb on + strandat 131.882 kb on + strandat 131.882 kb on + strandat 131.917 kb on + strandat 131.935 kb on - strandat 131.940 kb on + strandat 131.940 kb on + strandat 131.941 kb on - strandat 131.942 kb on + strandat 131.945 kb on + strandat 131.971 kb on + strandat 131.974 kb on + strandat 131.974 kb on + strandat 132.009 kb on + strandat 132.098 kb on - strand, within BACOVA_01476at 132.110 kb on + strand, within BACOVA_01476at 132.110 kb on + strand, within BACOVA_01476at 132.111 kb on - strand, within BACOVA_01476at 132.114 kb on - strand, within BACOVA_01476at 132.119 kb on - strand, within BACOVA_01476at 132.145 kb on - strand, within BACOVA_01476at 132.148 kb on + strand, within BACOVA_01476at 132.162 kb on + strand, within BACOVA_01476at 132.163 kb on - strand, within BACOVA_01476at 132.182 kb on - strand, within BACOVA_01476at 132.182 kb on - strand, within BACOVA_01476at 132.210 kb on + strand, within BACOVA_01476at 132.211 kb on - strand, within BACOVA_01476at 132.234 kb on + strand, within BACOVA_01476at 132.280 kb on + strand, within BACOVA_01476at 132.280 kb on + strand, within BACOVA_01476at 132.285 kb on + strand, within BACOVA_01476at 132.285 kb on + strand, within BACOVA_01476at 132.286 kb on - strand, within BACOVA_01476at 132.358 kb on + strand, within BACOVA_01476at 132.359 kb on - strand, within BACOVA_01476at 132.374 kb on + strand, within BACOVA_01476at 132.438 kb on + strand, within BACOVA_01476at 132.478 kb on - strand, within BACOVA_01476at 132.478 kb on - strand, within BACOVA_01476at 132.548 kb on - strand, within BACOVA_01476at 132.553 kb on + strand, within BACOVA_01476at 132.554 kb on - strand, within BACOVA_01476at 132.579 kb on + strand, within BACOVA_01476at 132.579 kb on + strand, within BACOVA_01476at 132.606 kb on + strand, within BACOVA_01476at 132.607 kb on - strand, within BACOVA_01476at 132.692 kb on + strand, within BACOVA_01476at 132.714 kb on - strand, within BACOVA_01476at 132.718 kb on + strand, within BACOVA_01476at 132.719 kb on - strand, within BACOVA_01476at 132.782 kb on + strandat 132.824 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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130,529 + BACOVA_01474 0.27 +1.0
130,569 - BACOVA_01474 0.31 -0.1
130,569 - BACOVA_01474 0.31 +1.2
130,591 - BACOVA_01474 0.34 -3.5
130,591 - BACOVA_01474 0.34 +0.4
130,600 - BACOVA_01474 0.35 -0.4
130,612 - BACOVA_01474 0.36 +2.6
130,623 - BACOVA_01474 0.37 -1.7
130,623 - BACOVA_01474 0.37 -0.5
130,623 - BACOVA_01474 0.37 -0.6
130,632 + BACOVA_01474 0.38 -1.5
130,632 + BACOVA_01474 0.38 +2.2
130,684 - BACOVA_01474 0.44 -0.2
130,753 - BACOVA_01474 0.51 -2.4
130,753 - BACOVA_01474 0.51 +0.0
130,766 + BACOVA_01474 0.52 -0.4
130,974 - BACOVA_01474 0.74 +0.4
130,990 + BACOVA_01474 0.76 -0.7
130,993 + BACOVA_01474 0.76 +1.0
130,993 + BACOVA_01474 0.76 +0.2
130,993 + BACOVA_01474 0.76 -0.3
130,994 - BACOVA_01474 0.77 +2.3
130,999 + BACOVA_01474 0.77 -0.7
131,071 - BACOVA_01474 0.85 +0.3
131,114 - BACOVA_01474 0.89 +1.0
131,127 + +0.5
131,130 + -0.0
131,130 + +0.4
131,130 + -0.1
131,130 + -0.1
131,131 - -0.4
131,134 + +0.3
131,144 + +3.0
131,183 + +0.1
131,184 - -1.1
131,208 + -1.3
131,213 + +1.2
131,214 - -0.4
131,214 - -0.9
131,214 - -1.8
131,269 + +1.7
131,275 + +0.8
131,275 + +2.2
131,276 - +1.2
131,279 + +1.4
131,280 - -0.4
131,280 - -0.2
131,362 - -0.3
131,374 - +2.6
131,374 - -0.7
131,374 - -0.2
131,374 - -0.3
131,376 + -2.4
131,417 + -1.0
131,417 + -1.1
131,417 + -0.9
131,417 + +0.3
131,417 + -0.4
131,417 + -1.1
131,417 + -1.5
131,417 + +1.9
131,418 - -0.3
131,418 - +0.3
131,430 + -0.1
131,430 + +0.7
131,431 - -0.2
131,431 - +2.8
131,447 - +0.5
131,459 + -0.2
131,459 + -1.1
131,555 + +0.0
131,648 + BACOVA_01475 0.37 +0.3
131,651 + BACOVA_01475 0.38 -1.3
131,795 + BACOVA_01475 0.82 -1.6
131,796 - BACOVA_01475 0.83 -0.2
131,796 - BACOVA_01475 0.83 +0.2
131,797 + BACOVA_01475 0.83 +0.0
131,798 - BACOVA_01475 0.83 -2.2
131,873 - -0.4
131,875 + -1.9
131,876 - -1.3
131,880 + -1.6
131,880 + -2.7
131,882 + -1.0
131,882 + -1.1
131,917 + -1.3
131,935 - -1.9
131,940 + +0.1
131,940 + +0.6
131,941 - -0.4
131,942 + -1.1
131,945 + -0.3
131,971 + -1.7
131,974 + +1.2
131,974 + -1.0
132,009 + -2.2
132,098 - BACOVA_01476 0.14 +0.8
132,110 + BACOVA_01476 0.16 -0.5
132,110 + BACOVA_01476 0.16 -0.5
132,111 - BACOVA_01476 0.16 +1.5
132,114 - BACOVA_01476 0.16 +0.2
132,119 - BACOVA_01476 0.17 +1.0
132,145 - BACOVA_01476 0.20 -0.7
132,148 + BACOVA_01476 0.20 -1.7
132,162 + BACOVA_01476 0.21 -0.2
132,163 - BACOVA_01476 0.22 +0.1
132,182 - BACOVA_01476 0.24 +0.4
132,182 - BACOVA_01476 0.24 -2.3
132,210 + BACOVA_01476 0.27 +0.5
132,211 - BACOVA_01476 0.27 -0.9
132,234 + BACOVA_01476 0.30 -0.9
132,280 + BACOVA_01476 0.35 +0.5
132,280 + BACOVA_01476 0.35 -1.2
132,285 + BACOVA_01476 0.36 +0.6
132,285 + BACOVA_01476 0.36 -1.0
132,286 - BACOVA_01476 0.36 -0.5
132,358 + BACOVA_01476 0.44 -1.8
132,359 - BACOVA_01476 0.44 +1.9
132,374 + BACOVA_01476 0.46 -0.3
132,438 + BACOVA_01476 0.53 +0.3
132,478 - BACOVA_01476 0.58 -1.2
132,478 - BACOVA_01476 0.58 -1.6
132,548 - BACOVA_01476 0.66 -0.1
132,553 + BACOVA_01476 0.66 -0.4
132,554 - BACOVA_01476 0.67 -0.7
132,579 + BACOVA_01476 0.69 -0.3
132,579 + BACOVA_01476 0.69 +1.6
132,606 + BACOVA_01476 0.73 -0.3
132,607 - BACOVA_01476 0.73 +0.8
132,692 + BACOVA_01476 0.82 +2.8
132,714 - BACOVA_01476 0.85 -1.2
132,718 + BACOVA_01476 0.85 -1.8
132,719 - BACOVA_01476 0.86 +2.2
132,782 + +0.3
132,824 + +0.3

Or see this region's nucleotide sequence