Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01044 and BACOVA_01045 are separated by 51 nucleotides BACOVA_01045 and BACOVA_01046 are separated by 10 nucleotides BACOVA_01046 and BACOVA_01047 are separated by 28 nucleotides BACOVA_01047 and BACOVA_01048 are separated by 85 nucleotides BACOVA_01048 and BACOVA_01049 are separated by 97 nucleotides BACOVA_01049 and BACOVA_01050 are separated by 17 nucleotides BACOVA_01050 and BACOVA_01051 are separated by 73 nucleotides BACOVA_01051 and BACOVA_01052 are separated by 187 nucleotides
BACOVA_01044: BACOVA_01044 - putative translation elongation factor Tu, at 255,517 to 256,701
_01044
BACOVA_01045: BACOVA_01045 - tRNA-Thr, at 256,753 to 256,824
_01045
BACOVA_01046: BACOVA_01046 - tRNA-Gly, at 256,835 to 256,907
_01046
BACOVA_01047: BACOVA_01047 - tRNA-Tyr, at 256,936 to 257,018
_01047
BACOVA_01048: BACOVA_01048 - tRNA-Thr, at 257,104 to 257,177
_01048
BACOVA_01049: BACOVA_01049 - hypothetical protein, at 257,275 to 257,574
_01049
BACOVA_01050: BACOVA_01050 - site-specific recombinase, phage integrase family/ribosomal subunit interface protein, at 257,592 to 258,473
_01050
BACOVA_01051: BACOVA_01051 - 30S ribosomal protein S21, at 258,547 to 258,738
_01051
BACOVA_01052: BACOVA_01052 - hypothetical protein, at 258,926 to 260,707
_01052
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.741 kb on - strand at 256.741 kb on - strand at 256.750 kb on - strand at 256.819 kb on - strand at 257.236 kb on - strand at 257.300 kb on + strand at 257.300 kb on + strand at 257.301 kb on - strand at 257.304 kb on + strand at 257.317 kb on + strand, within BACOVA_01049 at 257.358 kb on + strand, within BACOVA_01049 at 257.358 kb on + strand, within BACOVA_01049 at 257.359 kb on - strand, within BACOVA_01049 at 257.379 kb on - strand, within BACOVA_01049 at 257.402 kb on - strand, within BACOVA_01049 at 257.443 kb on + strand, within BACOVA_01049 at 257.453 kb on - strand, within BACOVA_01049 at 257.464 kb on + strand, within BACOVA_01049 at 257.475 kb on + strand, within BACOVA_01049 at 257.575 kb on - strand at 257.578 kb on + strand at 257.616 kb on - strand at 257.616 kb on - strand at 257.745 kb on - strand, within BACOVA_01050 at 257.814 kb on - strand, within BACOVA_01050 at 258.855 kb on + strand at 258.867 kb on + strand at 258.899 kb on + strand at 258.899 kb on + strand at 258.899 kb on + strand at 258.899 kb on + strand at 258.900 kb on - strand at 258.900 kb on - strand at 258.900 kb on - strand at 258.912 kb on + strand at 258.912 kb on + strand at 258.913 kb on - strand at 258.915 kb on + strand at 258.920 kb on + strand at 258.920 kb on + strand at 258.921 kb on - strand at 258.925 kb on + strand at 258.939 kb on + strand at 258.939 kb on + strand at 258.940 kb on - strand at 259.001 kb on - strand at 259.001 kb on - strand at 259.025 kb on - strand at 259.076 kb on - strand at 259.112 kb on - strand, within BACOVA_01052 at 259.140 kb on - strand, within BACOVA_01052 at 259.154 kb on - strand, within BACOVA_01052 at 259.180 kb on + strand, within BACOVA_01052 at 259.185 kb on + strand, within BACOVA_01052 at 259.187 kb on + strand, within BACOVA_01052 at 259.187 kb on + strand, within BACOVA_01052 at 259.187 kb on + strand, within BACOVA_01052 at 259.188 kb on - strand, within BACOVA_01052 at 259.188 kb on - strand, within BACOVA_01052 at 259.190 kb on - strand, within BACOVA_01052 at 259.217 kb on - strand, within BACOVA_01052 at 259.219 kb on + strand, within BACOVA_01052 at 259.242 kb on + strand, within BACOVA_01052 at 259.243 kb on - strand, within BACOVA_01052 at 259.260 kb on + strand, within BACOVA_01052 at 259.260 kb on + strand, within BACOVA_01052 at 259.261 kb on - strand, within BACOVA_01052 at 259.332 kb on + strand, within BACOVA_01052 at 259.333 kb on - strand, within BACOVA_01052 at 259.344 kb on + strand, within BACOVA_01052 at 259.345 kb on - strand, within BACOVA_01052 at 259.364 kb on - strand, within BACOVA_01052 at 259.408 kb on + strand, within BACOVA_01052 at 259.412 kb on + strand, within BACOVA_01052 at 259.413 kb on - strand, within BACOVA_01052 at 259.413 kb on - strand, within BACOVA_01052 at 259.424 kb on + strand, within BACOVA_01052 at 259.424 kb on + strand, within BACOVA_01052 at 259.425 kb on - strand, within BACOVA_01052
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 256,741 - -2.0 256,741 - -2.0 256,750 - -1.4 256,819 - -0.1 257,236 - -0.1 257,300 + -0.3 257,300 + +0.5 257,301 - -1.2 257,304 + -0.3 257,317 + BACOVA_01049 0.14 -0.2 257,358 + BACOVA_01049 0.28 +2.0 257,358 + BACOVA_01049 0.28 +0.7 257,359 - BACOVA_01049 0.28 -1.2 257,379 - BACOVA_01049 0.35 +0.4 257,402 - BACOVA_01049 0.42 +0.8 257,443 + BACOVA_01049 0.56 -0.9 257,453 - BACOVA_01049 0.59 +1.3 257,464 + BACOVA_01049 0.63 -0.3 257,475 + BACOVA_01049 0.67 +2.1 257,575 - -1.9 257,578 + +0.4 257,616 - -0.7 257,616 - -0.4 257,745 - BACOVA_01050 0.17 -1.7 257,814 - BACOVA_01050 0.25 +0.4 258,855 + +0.9 258,867 + +0.4 258,899 + -2.1 258,899 + -1.0 258,899 + +0.6 258,899 + -0.1 258,900 - -1.1 258,900 - +1.5 258,900 - +0.3 258,912 + +1.1 258,912 + +0.2 258,913 - +0.4 258,915 + -0.7 258,920 + +1.2 258,920 + -0.5 258,921 - +1.1 258,925 + +0.7 258,939 + +2.5 258,939 + -0.9 258,940 - -0.2 259,001 - +0.4 259,001 - +1.1 259,025 - +1.0 259,076 - -0.3 259,112 - BACOVA_01052 0.10 -0.7 259,140 - BACOVA_01052 0.12 +0.2 259,154 - BACOVA_01052 0.13 +0.5 259,180 + BACOVA_01052 0.14 -0.3 259,185 + BACOVA_01052 0.15 -1.0 259,187 + BACOVA_01052 0.15 -0.7 259,187 + BACOVA_01052 0.15 +0.1 259,187 + BACOVA_01052 0.15 -0.5 259,188 - BACOVA_01052 0.15 +0.4 259,188 - BACOVA_01052 0.15 -0.9 259,190 - BACOVA_01052 0.15 +0.3 259,217 - BACOVA_01052 0.16 -1.3 259,219 + BACOVA_01052 0.16 +0.7 259,242 + BACOVA_01052 0.18 -1.2 259,243 - BACOVA_01052 0.18 +0.9 259,260 + BACOVA_01052 0.19 +0.5 259,260 + BACOVA_01052 0.19 +0.4 259,261 - BACOVA_01052 0.19 +0.3 259,332 + BACOVA_01052 0.23 +1.9 259,333 - BACOVA_01052 0.23 +1.1 259,344 + BACOVA_01052 0.23 -1.3 259,345 - BACOVA_01052 0.24 +2.1 259,364 - BACOVA_01052 0.25 -0.6 259,408 + BACOVA_01052 0.27 +2.1 259,412 + BACOVA_01052 0.27 -0.3 259,413 - BACOVA_01052 0.27 +2.0 259,413 - BACOVA_01052 0.27 -0.0 259,424 + BACOVA_01052 0.28 -0.8 259,424 + BACOVA_01052 0.28 -2.1 259,425 - BACOVA_01052 0.28 +0.3
Or see this region's nucleotide sequence