Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00842

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00841 and BACOVA_00842 are separated by 144 nucleotidesBACOVA_00842 and BACOVA_00843 are separated by 34 nucleotides BACOVA_00841: BACOVA_00841 - sigma factor regulatory protein, FecR/PupR family, at 98,680 to 99,678 _00841 BACOVA_00842: BACOVA_00842 - RNA polymerase sigma-70 factor, at 99,823 to 100,398 _00842 BACOVA_00843: BACOVA_00843 - hypothetical protein, at 100,433 to 102,145 _00843 Position (kb) 99 100 101Strain fitness (log2 ratio) -2 -1 0 1 2 3at 98.872 kb on - strand, within BACOVA_00841at 98.901 kb on + strand, within BACOVA_00841at 98.902 kb on - strand, within BACOVA_00841at 98.904 kb on - strand, within BACOVA_00841at 98.956 kb on - strand, within BACOVA_00841at 98.972 kb on - strand, within BACOVA_00841at 98.975 kb on - strand, within BACOVA_00841at 98.976 kb on + strand, within BACOVA_00841at 98.977 kb on - strand, within BACOVA_00841at 98.977 kb on - strand, within BACOVA_00841at 99.043 kb on - strand, within BACOVA_00841at 99.075 kb on + strand, within BACOVA_00841at 99.076 kb on - strand, within BACOVA_00841at 99.076 kb on - strand, within BACOVA_00841at 99.094 kb on + strand, within BACOVA_00841at 99.099 kb on + strand, within BACOVA_00841at 99.100 kb on - strand, within BACOVA_00841at 99.127 kb on + strand, within BACOVA_00841at 99.142 kb on + strand, within BACOVA_00841at 99.237 kb on + strand, within BACOVA_00841at 99.237 kb on + strand, within BACOVA_00841at 99.237 kb on + strand, within BACOVA_00841at 99.237 kb on + strand, within BACOVA_00841at 99.240 kb on + strand, within BACOVA_00841at 99.240 kb on + strand, within BACOVA_00841at 99.240 kb on + strand, within BACOVA_00841at 99.240 kb on + strand, within BACOVA_00841at 99.240 kb on + strand, within BACOVA_00841at 99.240 kb on + strand, within BACOVA_00841at 99.240 kb on + strand, within BACOVA_00841at 99.241 kb on - strand, within BACOVA_00841at 99.241 kb on - strand, within BACOVA_00841at 99.241 kb on - strand, within BACOVA_00841at 99.241 kb on - strand, within BACOVA_00841at 99.241 kb on - strand, within BACOVA_00841at 99.241 kb on - strand, within BACOVA_00841at 99.241 kb on - strand, within BACOVA_00841at 99.314 kb on + strand, within BACOVA_00841at 99.358 kb on + strand, within BACOVA_00841at 99.359 kb on - strand, within BACOVA_00841at 99.359 kb on - strand, within BACOVA_00841at 99.363 kb on - strand, within BACOVA_00841at 99.397 kb on - strand, within BACOVA_00841at 99.397 kb on - strand, within BACOVA_00841at 99.416 kb on + strand, within BACOVA_00841at 99.417 kb on - strand, within BACOVA_00841at 99.417 kb on - strand, within BACOVA_00841at 99.421 kb on + strand, within BACOVA_00841at 99.421 kb on + strand, within BACOVA_00841at 99.422 kb on - strand, within BACOVA_00841at 99.422 kb on - strand, within BACOVA_00841at 99.438 kb on + strand, within BACOVA_00841at 99.576 kb on + strand, within BACOVA_00841at 99.638 kb on + strandat 99.688 kb on + strandat 99.691 kb on + strandat 99.691 kb on + strandat 99.692 kb on - strandat 99.701 kb on + strandat 99.701 kb on + strandat 99.710 kb on + strandat 99.710 kb on + strandat 99.729 kb on - strandat 99.858 kb on - strandat 99.886 kb on + strand, within BACOVA_00842at 99.886 kb on + strand, within BACOVA_00842at 99.886 kb on + strand, within BACOVA_00842at 99.888 kb on + strand, within BACOVA_00842at 99.889 kb on - strand, within BACOVA_00842at 99.889 kb on - strand, within BACOVA_00842at 99.950 kb on - strand, within BACOVA_00842at 99.950 kb on - strand, within BACOVA_00842at 100.014 kb on + strand, within BACOVA_00842at 100.014 kb on + strand, within BACOVA_00842at 100.017 kb on + strand, within BACOVA_00842at 100.045 kb on - strand, within BACOVA_00842at 100.048 kb on - strand, within BACOVA_00842at 100.061 kb on + strand, within BACOVA_00842at 100.086 kb on + strand, within BACOVA_00842at 100.086 kb on + strand, within BACOVA_00842at 100.087 kb on - strand, within BACOVA_00842at 100.107 kb on - strand, within BACOVA_00842at 100.181 kb on + strand, within BACOVA_00842at 100.182 kb on - strand, within BACOVA_00842at 100.243 kb on - strand, within BACOVA_00842at 100.260 kb on + strand, within BACOVA_00842at 100.319 kb on + strand, within BACOVA_00842at 100.319 kb on + strand, within BACOVA_00842at 100.322 kb on + strand, within BACOVA_00842at 100.351 kb on + strandat 100.351 kb on + strandat 100.351 kb on + strandat 100.352 kb on - strandat 100.378 kb on - strandat 100.378 kb on - strandat 100.380 kb on + strandat 100.381 kb on - strandat 100.381 kb on - strandat 100.414 kb on + strandat 100.414 kb on + strandat 100.415 kb on - strandat 100.426 kb on + strandat 100.426 kb on + strandat 100.436 kb on + strandat 100.436 kb on + strandat 100.459 kb on + strandat 100.460 kb on - strandat 100.473 kb on + strandat 100.482 kb on + strandat 100.482 kb on - strandat 100.483 kb on - strandat 100.483 kb on - strandat 100.483 kb on - strandat 100.483 kb on - strandat 100.490 kb on + strandat 100.490 kb on + strandat 100.502 kb on - strandat 100.600 kb on + strandat 100.636 kb on + strand, within BACOVA_00843at 100.636 kb on + strand, within BACOVA_00843at 100.636 kb on + strand, within BACOVA_00843at 100.638 kb on + strand, within BACOVA_00843at 100.638 kb on + strand, within BACOVA_00843at 100.641 kb on + strand, within BACOVA_00843at 100.686 kb on - strand, within BACOVA_00843at 100.714 kb on + strand, within BACOVA_00843at 100.714 kb on + strand, within BACOVA_00843at 100.714 kb on + strand, within BACOVA_00843at 100.715 kb on - strand, within BACOVA_00843at 100.715 kb on - strand, within BACOVA_00843at 100.715 kb on - strand, within BACOVA_00843at 100.723 kb on + strand, within BACOVA_00843at 100.723 kb on + strand, within BACOVA_00843at 100.731 kb on + strand, within BACOVA_00843at 100.732 kb on - strand, within BACOVA_00843at 100.815 kb on + strand, within BACOVA_00843at 100.888 kb on - strand, within BACOVA_00843at 100.888 kb on - strand, within BACOVA_00843at 100.908 kb on - strand, within BACOVA_00843at 100.924 kb on + strand, within BACOVA_00843at 100.925 kb on - strand, within BACOVA_00843at 100.926 kb on + strand, within BACOVA_00843at 100.927 kb on - strand, within BACOVA_00843at 100.927 kb on - strand, within BACOVA_00843at 100.927 kb on - strand, within BACOVA_00843at 100.938 kb on + strand, within BACOVA_00843at 100.938 kb on + strand, within BACOVA_00843at 100.938 kb on + strand, within BACOVA_00843at 100.938 kb on + strand, within BACOVA_00843at 100.939 kb on - strand, within BACOVA_00843at 100.939 kb on - strand, within BACOVA_00843at 100.941 kb on - strand, within BACOVA_00843at 100.945 kb on + strand, within BACOVA_00843at 100.945 kb on + strand, within BACOVA_00843at 100.946 kb on - strand, within BACOVA_00843at 100.946 kb on - strand, within BACOVA_00843at 100.961 kb on - strand, within BACOVA_00843at 101.026 kb on - strand, within BACOVA_00843at 101.065 kb on + strand, within BACOVA_00843at 101.066 kb on - strand, within BACOVA_00843at 101.084 kb on - strand, within BACOVA_00843at 101.210 kb on - strand, within BACOVA_00843at 101.210 kb on - strand, within BACOVA_00843at 101.244 kb on + strand, within BACOVA_00843at 101.248 kb on + strand, within BACOVA_00843at 101.248 kb on + strand, within BACOVA_00843at 101.248 kb on + strand, within BACOVA_00843at 101.305 kb on - strand, within BACOVA_00843at 101.305 kb on - strand, within BACOVA_00843at 101.309 kb on - strand, within BACOVA_00843at 101.309 kb on - strand, within BACOVA_00843at 101.315 kb on + strand, within BACOVA_00843at 101.316 kb on - strand, within BACOVA_00843at 101.319 kb on - strand, within BACOVA_00843at 101.319 kb on - strand, within BACOVA_00843at 101.319 kb on - strand, within BACOVA_00843at 101.358 kb on + strand, within BACOVA_00843at 101.358 kb on + strand, within BACOVA_00843at 101.362 kb on + strand, within BACOVA_00843at 101.363 kb on - strand, within BACOVA_00843at 101.378 kb on + strand, within BACOVA_00843at 101.378 kb on + strand, within BACOVA_00843at 101.379 kb on - strand, within BACOVA_00843at 101.379 kb on - strand, within BACOVA_00843at 101.383 kb on - strand, within BACOVA_00843

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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98,872 - BACOVA_00841 0.19 -1.6
98,901 + BACOVA_00841 0.22 -0.4
98,902 - BACOVA_00841 0.22 +1.4
98,904 - BACOVA_00841 0.22 -0.4
98,956 - BACOVA_00841 0.28 +1.3
98,972 - BACOVA_00841 0.29 -1.2
98,975 - BACOVA_00841 0.30 -0.1
98,976 + BACOVA_00841 0.30 -0.6
98,977 - BACOVA_00841 0.30 -0.1
98,977 - BACOVA_00841 0.30 -0.4
99,043 - BACOVA_00841 0.36 -1.9
99,075 + BACOVA_00841 0.40 -0.4
99,076 - BACOVA_00841 0.40 +0.3
99,076 - BACOVA_00841 0.40 -0.8
99,094 + BACOVA_00841 0.41 -0.6
99,099 + BACOVA_00841 0.42 +0.9
99,100 - BACOVA_00841 0.42 -0.0
99,127 + BACOVA_00841 0.45 -1.5
99,142 + BACOVA_00841 0.46 +0.8
99,237 + BACOVA_00841 0.56 +0.5
99,237 + BACOVA_00841 0.56 -1.0
99,237 + BACOVA_00841 0.56 -1.8
99,237 + BACOVA_00841 0.56 -1.3
99,240 + BACOVA_00841 0.56 -0.5
99,240 + BACOVA_00841 0.56 -1.3
99,240 + BACOVA_00841 0.56 +1.3
99,240 + BACOVA_00841 0.56 -1.0
99,240 + BACOVA_00841 0.56 -0.8
99,240 + BACOVA_00841 0.56 -0.7
99,240 + BACOVA_00841 0.56 +0.9
99,241 - BACOVA_00841 0.56 +0.0
99,241 - BACOVA_00841 0.56 -1.2
99,241 - BACOVA_00841 0.56 -1.0
99,241 - BACOVA_00841 0.56 -0.8
99,241 - BACOVA_00841 0.56 -1.5
99,241 - BACOVA_00841 0.56 -0.6
99,241 - BACOVA_00841 0.56 +1.2
99,314 + BACOVA_00841 0.63 -0.3
99,358 + BACOVA_00841 0.68 -1.5
99,359 - BACOVA_00841 0.68 -0.3
99,359 - BACOVA_00841 0.68 -0.4
99,363 - BACOVA_00841 0.68 -0.8
99,397 - BACOVA_00841 0.72 +1.3
99,397 - BACOVA_00841 0.72 -0.3
99,416 + BACOVA_00841 0.74 +0.1
99,417 - BACOVA_00841 0.74 +1.9
99,417 - BACOVA_00841 0.74 +2.4
99,421 + BACOVA_00841 0.74 -1.4
99,421 + BACOVA_00841 0.74 +0.2
99,422 - BACOVA_00841 0.74 -1.0
99,422 - BACOVA_00841 0.74 +0.6
99,438 + BACOVA_00841 0.76 -0.3
99,576 + BACOVA_00841 0.90 -0.8
99,638 + +1.3
99,688 + -1.0
99,691 + +0.2
99,691 + +0.3
99,692 - +0.2
99,701 + +0.2
99,701 + -1.5
99,710 + -0.8
99,710 + -2.1
99,729 - -0.7
99,858 - +0.1
99,886 + BACOVA_00842 0.11 -1.5
99,886 + BACOVA_00842 0.11 -1.7
99,886 + BACOVA_00842 0.11 -0.2
99,888 + BACOVA_00842 0.11 +1.9
99,889 - BACOVA_00842 0.11 +0.2
99,889 - BACOVA_00842 0.11 -1.3
99,950 - BACOVA_00842 0.22 +0.5
99,950 - BACOVA_00842 0.22 +0.7
100,014 + BACOVA_00842 0.33 +0.3
100,014 + BACOVA_00842 0.33 -0.6
100,017 + BACOVA_00842 0.34 +0.0
100,045 - BACOVA_00842 0.39 +1.0
100,048 - BACOVA_00842 0.39 -0.2
100,061 + BACOVA_00842 0.41 +0.4
100,086 + BACOVA_00842 0.46 +2.7
100,086 + BACOVA_00842 0.46 +2.1
100,087 - BACOVA_00842 0.46 +0.2
100,107 - BACOVA_00842 0.49 -1.9
100,181 + BACOVA_00842 0.62 -0.1
100,182 - BACOVA_00842 0.62 -0.3
100,243 - BACOVA_00842 0.73 -0.4
100,260 + BACOVA_00842 0.76 -0.2
100,319 + BACOVA_00842 0.86 +0.7
100,319 + BACOVA_00842 0.86 -0.3
100,322 + BACOVA_00842 0.87 -1.2
100,351 + -1.7
100,351 + -0.2
100,351 + -1.0
100,352 - -0.0
100,378 - -0.3
100,378 - -0.1
100,380 + -1.5
100,381 - -0.8
100,381 - +0.7
100,414 + -1.2
100,414 + +2.3
100,415 - -1.6
100,426 + -0.2
100,426 + +1.7
100,436 + +0.6
100,436 + -0.3
100,459 + -1.1
100,460 - -0.1
100,473 + -0.7
100,482 + +0.3
100,482 - +0.5
100,483 - +0.3
100,483 - +1.0
100,483 - -2.3
100,483 - +0.1
100,490 + -0.4
100,490 + -1.2
100,502 - -0.9
100,600 + +3.6
100,636 + BACOVA_00843 0.12 +0.5
100,636 + BACOVA_00843 0.12 -0.3
100,636 + BACOVA_00843 0.12 +0.6
100,638 + BACOVA_00843 0.12 -0.1
100,638 + BACOVA_00843 0.12 -0.8
100,641 + BACOVA_00843 0.12 +1.4
100,686 - BACOVA_00843 0.15 +0.8
100,714 + BACOVA_00843 0.16 +1.3
100,714 + BACOVA_00843 0.16 -0.1
100,714 + BACOVA_00843 0.16 -1.0
100,715 - BACOVA_00843 0.16 +0.3
100,715 - BACOVA_00843 0.16 +1.1
100,715 - BACOVA_00843 0.16 +0.8
100,723 + BACOVA_00843 0.17 -0.1
100,723 + BACOVA_00843 0.17 -0.0
100,731 + BACOVA_00843 0.17 -1.9
100,732 - BACOVA_00843 0.17 +0.5
100,815 + BACOVA_00843 0.22 -1.0
100,888 - BACOVA_00843 0.27 -0.5
100,888 - BACOVA_00843 0.27 -1.2
100,908 - BACOVA_00843 0.28 -0.5
100,924 + BACOVA_00843 0.29 -0.3
100,925 - BACOVA_00843 0.29 +1.2
100,926 + BACOVA_00843 0.29 -1.7
100,927 - BACOVA_00843 0.29 -0.7
100,927 - BACOVA_00843 0.29 +0.8
100,927 - BACOVA_00843 0.29 -1.0
100,938 + BACOVA_00843 0.29 +0.3
100,938 + BACOVA_00843 0.29 +1.0
100,938 + BACOVA_00843 0.29 +0.7
100,938 + BACOVA_00843 0.29 -0.1
100,939 - BACOVA_00843 0.30 -1.4
100,939 - BACOVA_00843 0.30 +0.7
100,941 - BACOVA_00843 0.30 -2.5
100,945 + BACOVA_00843 0.30 +0.8
100,945 + BACOVA_00843 0.30 -0.4
100,946 - BACOVA_00843 0.30 +0.3
100,946 - BACOVA_00843 0.30 +0.3
100,961 - BACOVA_00843 0.31 +0.2
101,026 - BACOVA_00843 0.35 +0.1
101,065 + BACOVA_00843 0.37 +0.6
101,066 - BACOVA_00843 0.37 +1.1
101,084 - BACOVA_00843 0.38 -1.3
101,210 - BACOVA_00843 0.45 +0.4
101,210 - BACOVA_00843 0.45 -1.5
101,244 + BACOVA_00843 0.47 -1.0
101,248 + BACOVA_00843 0.48 -1.3
101,248 + BACOVA_00843 0.48 +0.3
101,248 + BACOVA_00843 0.48 -1.1
101,305 - BACOVA_00843 0.51 -1.3
101,305 - BACOVA_00843 0.51 -1.1
101,309 - BACOVA_00843 0.51 +1.7
101,309 - BACOVA_00843 0.51 +0.4
101,315 + BACOVA_00843 0.51 +1.0
101,316 - BACOVA_00843 0.52 -0.4
101,319 - BACOVA_00843 0.52 +0.5
101,319 - BACOVA_00843 0.52 -0.3
101,319 - BACOVA_00843 0.52 -2.6
101,358 + BACOVA_00843 0.54 +0.5
101,358 + BACOVA_00843 0.54 +0.9
101,362 + BACOVA_00843 0.54 -1.1
101,363 - BACOVA_00843 0.54 -0.1
101,378 + BACOVA_00843 0.55 +1.7
101,378 + BACOVA_00843 0.55 +0.2
101,379 - BACOVA_00843 0.55 +0.3
101,379 - BACOVA_00843 0.55 -0.7
101,383 - BACOVA_00843 0.55 +2.1

Or see this region's nucleotide sequence