Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00782

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00780 and BACOVA_00781 are separated by 1 nucleotidesBACOVA_00781 and BACOVA_00782 are separated by 77 nucleotidesBACOVA_00782 and BACOVA_00783 are separated by 118 nucleotidesBACOVA_00783 and BACOVA_00784 are separated by 97 nucleotides BACOVA_00780: BACOVA_00780 - hypothetical protein, at 464,746 to 465,231 _00780 BACOVA_00781: BACOVA_00781 - hypothetical protein, at 465,233 to 466,000 _00781 BACOVA_00782: BACOVA_00782 - transporter, major facilitator family protein, at 466,078 to 467,331 _00782 BACOVA_00783: BACOVA_00783 - hypothetical protein, at 467,450 to 467,686 _00783 BACOVA_00784: BACOVA_00784 - Sigma-70 region 2, at 467,784 to 468,335 _00784 Position (kb) 466 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 465.080 kb on + strand, within BACOVA_00780at 465.180 kb on + strand, within BACOVA_00780at 465.181 kb on - strand, within BACOVA_00780at 465.188 kb on - strandat 465.227 kb on - strandat 465.260 kb on + strandat 465.350 kb on + strand, within BACOVA_00781at 465.350 kb on + strand, within BACOVA_00781at 465.488 kb on + strand, within BACOVA_00781at 465.579 kb on - strand, within BACOVA_00781at 465.630 kb on - strand, within BACOVA_00781at 465.752 kb on - strand, within BACOVA_00781at 465.851 kb on + strand, within BACOVA_00781at 465.851 kb on + strand, within BACOVA_00781at 465.852 kb on - strand, within BACOVA_00781at 465.889 kb on + strand, within BACOVA_00781at 465.905 kb on + strand, within BACOVA_00781at 465.905 kb on + strand, within BACOVA_00781at 465.961 kb on + strandat 465.962 kb on - strandat 466.083 kb on + strandat 466.092 kb on + strandat 466.112 kb on + strandat 466.155 kb on + strandat 466.188 kb on + strandat 466.424 kb on + strand, within BACOVA_00782at 466.433 kb on + strand, within BACOVA_00782at 466.433 kb on + strand, within BACOVA_00782at 466.434 kb on - strand, within BACOVA_00782at 466.434 kb on - strand, within BACOVA_00782at 466.471 kb on + strand, within BACOVA_00782at 466.486 kb on - strand, within BACOVA_00782at 466.548 kb on - strand, within BACOVA_00782at 466.583 kb on - strand, within BACOVA_00782at 466.592 kb on + strand, within BACOVA_00782at 466.592 kb on + strand, within BACOVA_00782at 466.593 kb on - strand, within BACOVA_00782at 466.597 kb on - strand, within BACOVA_00782at 466.597 kb on - strand, within BACOVA_00782at 466.609 kb on - strand, within BACOVA_00782at 466.610 kb on + strand, within BACOVA_00782at 466.610 kb on + strand, within BACOVA_00782at 466.696 kb on - strand, within BACOVA_00782at 466.849 kb on - strand, within BACOVA_00782at 466.849 kb on - strand, within BACOVA_00782at 466.874 kb on + strand, within BACOVA_00782at 466.878 kb on + strand, within BACOVA_00782at 466.879 kb on - strand, within BACOVA_00782at 466.885 kb on - strand, within BACOVA_00782at 466.885 kb on - strand, within BACOVA_00782at 466.915 kb on + strand, within BACOVA_00782at 466.915 kb on + strand, within BACOVA_00782at 466.915 kb on + strand, within BACOVA_00782at 466.922 kb on - strand, within BACOVA_00782at 467.055 kb on + strand, within BACOVA_00782at 467.056 kb on - strand, within BACOVA_00782at 467.098 kb on + strand, within BACOVA_00782at 467.146 kb on - strand, within BACOVA_00782at 467.146 kb on - strand, within BACOVA_00782at 467.146 kb on - strand, within BACOVA_00782at 467.172 kb on - strand, within BACOVA_00782at 467.238 kb on + strandat 467.239 kb on - strandat 467.239 kb on - strandat 467.253 kb on - strandat 467.254 kb on + strandat 467.265 kb on + strandat 467.266 kb on - strandat 467.266 kb on - strandat 467.270 kb on + strandat 467.271 kb on - strandat 467.271 kb on - strandat 467.274 kb on - strandat 467.320 kb on - strandat 467.364 kb on + strandat 467.365 kb on - strandat 467.410 kb on + strandat 467.419 kb on + strandat 467.420 kb on - strandat 467.428 kb on + strandat 467.440 kb on - strandat 467.443 kb on - strandat 467.443 kb on - strandat 467.477 kb on - strand, within BACOVA_00783at 467.477 kb on - strand, within BACOVA_00783at 467.485 kb on + strand, within BACOVA_00783at 467.491 kb on + strand, within BACOVA_00783at 467.492 kb on - strand, within BACOVA_00783at 467.492 kb on - strand, within BACOVA_00783at 467.516 kb on + strand, within BACOVA_00783at 467.556 kb on - strand, within BACOVA_00783at 467.556 kb on - strand, within BACOVA_00783at 467.556 kb on - strand, within BACOVA_00783at 467.563 kb on + strand, within BACOVA_00783at 467.640 kb on - strand, within BACOVA_00783at 467.652 kb on + strand, within BACOVA_00783at 467.652 kb on + strand, within BACOVA_00783at 467.701 kb on + strandat 467.701 kb on + strandat 467.702 kb on - strandat 467.702 kb on - strandat 467.723 kb on + strandat 467.727 kb on + strandat 467.751 kb on + strandat 467.751 kb on + strandat 467.751 kb on + strandat 467.751 kb on + strandat 467.752 kb on - strandat 467.752 kb on - strandat 467.752 kb on - strandat 467.755 kb on + strandat 467.846 kb on - strand, within BACOVA_00784at 467.846 kb on - strand, within BACOVA_00784at 467.852 kb on + strand, within BACOVA_00784at 467.853 kb on - strand, within BACOVA_00784at 467.859 kb on - strand, within BACOVA_00784at 467.870 kb on + strand, within BACOVA_00784at 467.892 kb on + strand, within BACOVA_00784at 467.893 kb on - strand, within BACOVA_00784at 467.895 kb on - strand, within BACOVA_00784at 467.900 kb on - strand, within BACOVA_00784at 467.901 kb on + strand, within BACOVA_00784at 467.901 kb on + strand, within BACOVA_00784at 467.901 kb on + strand, within BACOVA_00784at 467.907 kb on - strand, within BACOVA_00784at 467.932 kb on - strand, within BACOVA_00784at 467.992 kb on + strand, within BACOVA_00784at 467.993 kb on - strand, within BACOVA_00784at 468.003 kb on + strand, within BACOVA_00784at 468.004 kb on - strand, within BACOVA_00784at 468.011 kb on + strand, within BACOVA_00784at 468.021 kb on + strand, within BACOVA_00784at 468.027 kb on - strand, within BACOVA_00784at 468.053 kb on + strand, within BACOVA_00784at 468.055 kb on + strand, within BACOVA_00784at 468.055 kb on + strand, within BACOVA_00784at 468.056 kb on - strand, within BACOVA_00784at 468.059 kb on + strand, within BACOVA_00784at 468.059 kb on + strand, within BACOVA_00784at 468.060 kb on - strand, within BACOVA_00784at 468.060 kb on - strand, within BACOVA_00784at 468.060 kb on - strand, within BACOVA_00784at 468.109 kb on + strand, within BACOVA_00784at 468.135 kb on + strand, within BACOVA_00784at 468.200 kb on + strand, within BACOVA_00784at 468.251 kb on + strand, within BACOVA_00784at 468.254 kb on - strand, within BACOVA_00784at 468.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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465,080 + BACOVA_00780 0.69 +1.6
465,180 + BACOVA_00780 0.89 +0.9
465,181 - BACOVA_00780 0.90 +0.4
465,188 - +1.1
465,227 - -0.5
465,260 + +0.4
465,350 + BACOVA_00781 0.15 +1.6
465,350 + BACOVA_00781 0.15 +0.4
465,488 + BACOVA_00781 0.33 -1.1
465,579 - BACOVA_00781 0.45 +2.1
465,630 - BACOVA_00781 0.52 -0.7
465,752 - BACOVA_00781 0.68 -1.7
465,851 + BACOVA_00781 0.80 +1.2
465,851 + BACOVA_00781 0.80 -0.6
465,852 - BACOVA_00781 0.81 +0.1
465,889 + BACOVA_00781 0.85 +1.4
465,905 + BACOVA_00781 0.88 -1.9
465,905 + BACOVA_00781 0.88 +2.3
465,961 + +1.3
465,962 - +2.6
466,083 + -0.3
466,092 + +0.1
466,112 + +0.3
466,155 + +1.1
466,188 + -0.1
466,424 + BACOVA_00782 0.28 -1.9
466,433 + BACOVA_00782 0.28 -1.1
466,433 + BACOVA_00782 0.28 -1.9
466,434 - BACOVA_00782 0.28 -0.2
466,434 - BACOVA_00782 0.28 +1.5
466,471 + BACOVA_00782 0.31 -1.2
466,486 - BACOVA_00782 0.33 +0.1
466,548 - BACOVA_00782 0.37 -1.4
466,583 - BACOVA_00782 0.40 +0.3
466,592 + BACOVA_00782 0.41 +0.6
466,592 + BACOVA_00782 0.41 -0.9
466,593 - BACOVA_00782 0.41 -0.0
466,597 - BACOVA_00782 0.41 +0.5
466,597 - BACOVA_00782 0.41 +0.2
466,609 - BACOVA_00782 0.42 -0.3
466,610 + BACOVA_00782 0.42 -0.9
466,610 + BACOVA_00782 0.42 -1.2
466,696 - BACOVA_00782 0.49 -0.6
466,849 - BACOVA_00782 0.61 -1.2
466,849 - BACOVA_00782 0.61 -0.0
466,874 + BACOVA_00782 0.63 +1.2
466,878 + BACOVA_00782 0.64 +0.2
466,879 - BACOVA_00782 0.64 +0.7
466,885 - BACOVA_00782 0.64 +0.3
466,885 - BACOVA_00782 0.64 +0.0
466,915 + BACOVA_00782 0.67 -1.7
466,915 + BACOVA_00782 0.67 +2.3
466,915 + BACOVA_00782 0.67 +0.5
466,922 - BACOVA_00782 0.67 +0.2
467,055 + BACOVA_00782 0.78 -0.9
467,056 - BACOVA_00782 0.78 +1.2
467,098 + BACOVA_00782 0.81 +0.6
467,146 - BACOVA_00782 0.85 +2.4
467,146 - BACOVA_00782 0.85 -1.3
467,146 - BACOVA_00782 0.85 -0.5
467,172 - BACOVA_00782 0.87 -0.9
467,238 + +1.6
467,239 - +2.0
467,239 - +0.1
467,253 - -0.3
467,254 + +1.1
467,265 + +1.9
467,266 - +0.3
467,266 - -2.8
467,270 + -0.8
467,271 - +0.8
467,271 - +0.1
467,274 - +1.1
467,320 - +0.1
467,364 + -1.6
467,365 - -1.7
467,410 + +0.9
467,419 + +1.3
467,420 - -1.6
467,428 + -0.2
467,440 - +0.2
467,443 - +0.7
467,443 - -1.7
467,477 - BACOVA_00783 0.11 +2.6
467,477 - BACOVA_00783 0.11 -0.3
467,485 + BACOVA_00783 0.15 +0.8
467,491 + BACOVA_00783 0.17 +0.3
467,492 - BACOVA_00783 0.18 -1.4
467,492 - BACOVA_00783 0.18 +1.6
467,516 + BACOVA_00783 0.28 -1.9
467,556 - BACOVA_00783 0.45 +0.1
467,556 - BACOVA_00783 0.45 +0.9
467,556 - BACOVA_00783 0.45 -0.6
467,563 + BACOVA_00783 0.48 +0.4
467,640 - BACOVA_00783 0.80 +1.1
467,652 + BACOVA_00783 0.85 +0.6
467,652 + BACOVA_00783 0.85 +0.5
467,701 + -0.2
467,701 + +0.0
467,702 - -0.1
467,702 - +2.2
467,723 + -0.8
467,727 + -1.5
467,751 + -0.2
467,751 + -0.1
467,751 + +0.2
467,751 + +0.8
467,752 - +0.2
467,752 - -1.6
467,752 - -0.6
467,755 + -0.2
467,846 - BACOVA_00784 0.11 -0.0
467,846 - BACOVA_00784 0.11 -0.8
467,852 + BACOVA_00784 0.12 +0.1
467,853 - BACOVA_00784 0.12 -0.8
467,859 - BACOVA_00784 0.14 -0.2
467,870 + BACOVA_00784 0.16 +2.2
467,892 + BACOVA_00784 0.20 +0.9
467,893 - BACOVA_00784 0.20 +0.1
467,895 - BACOVA_00784 0.20 -0.3
467,900 - BACOVA_00784 0.21 +0.1
467,901 + BACOVA_00784 0.21 -0.4
467,901 + BACOVA_00784 0.21 +0.8
467,901 + BACOVA_00784 0.21 -0.1
467,907 - BACOVA_00784 0.22 -1.3
467,932 - BACOVA_00784 0.27 +1.8
467,992 + BACOVA_00784 0.38 -0.7
467,993 - BACOVA_00784 0.38 +0.3
468,003 + BACOVA_00784 0.40 +1.8
468,004 - BACOVA_00784 0.40 +1.2
468,011 + BACOVA_00784 0.41 -1.5
468,021 + BACOVA_00784 0.43 -1.7
468,027 - BACOVA_00784 0.44 +0.6
468,053 + BACOVA_00784 0.49 -1.7
468,055 + BACOVA_00784 0.49 -1.3
468,055 + BACOVA_00784 0.49 -1.6
468,056 - BACOVA_00784 0.49 -2.2
468,059 + BACOVA_00784 0.50 +0.6
468,059 + BACOVA_00784 0.50 +0.1
468,060 - BACOVA_00784 0.50 +2.5
468,060 - BACOVA_00784 0.50 +1.4
468,060 - BACOVA_00784 0.50 -0.9
468,109 + BACOVA_00784 0.59 -1.1
468,135 + BACOVA_00784 0.64 -1.4
468,200 + BACOVA_00784 0.75 -1.4
468,251 + BACOVA_00784 0.85 +1.3
468,254 - BACOVA_00784 0.85 -1.2
468,320 + +0.3

Or see this region's nucleotide sequence