Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00278

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00277 and BACOVA_00278 are separated by 3 nucleotidesBACOVA_00278 and BACOVA_00279 are separated by 55 nucleotides BACOVA_00277: BACOVA_00277 - PKD domain protein, at 532,466 to 534,037 _00277 BACOVA_00278: BACOVA_00278 - hypothetical protein, at 534,041 to 535,711 _00278 BACOVA_00279: BACOVA_00279 - hypothetical protein, at 535,767 to 537,449 _00279 Position (kb) 534 535 536Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 533.091 kb on + strand, within BACOVA_00277at 533.100 kb on + strand, within BACOVA_00277at 533.107 kb on + strand, within BACOVA_00277at 533.171 kb on + strand, within BACOVA_00277at 533.172 kb on - strand, within BACOVA_00277at 533.177 kb on + strand, within BACOVA_00277at 533.216 kb on + strand, within BACOVA_00277at 533.217 kb on - strand, within BACOVA_00277at 533.217 kb on - strand, within BACOVA_00277at 533.252 kb on - strand, within BACOVA_00277at 533.255 kb on - strand, within BACOVA_00277at 533.287 kb on - strand, within BACOVA_00277at 533.287 kb on - strand, within BACOVA_00277at 533.323 kb on + strand, within BACOVA_00277at 533.326 kb on + strand, within BACOVA_00277at 533.406 kb on + strand, within BACOVA_00277at 533.406 kb on + strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.442 kb on + strand, within BACOVA_00277at 533.445 kb on - strand, within BACOVA_00277at 533.532 kb on + strand, within BACOVA_00277at 533.532 kb on + strand, within BACOVA_00277at 533.533 kb on + strand, within BACOVA_00277at 533.533 kb on - strand, within BACOVA_00277at 533.586 kb on + strand, within BACOVA_00277at 533.596 kb on + strand, within BACOVA_00277at 533.635 kb on + strand, within BACOVA_00277at 533.635 kb on + strand, within BACOVA_00277at 533.636 kb on - strand, within BACOVA_00277at 533.664 kb on - strand, within BACOVA_00277at 533.695 kb on + strand, within BACOVA_00277at 533.843 kb on + strand, within BACOVA_00277at 533.882 kb on - strandat 533.912 kb on - strandat 533.957 kb on + strandat 533.958 kb on - strandat 533.962 kb on + strandat 533.963 kb on - strandat 534.006 kb on - strandat 534.012 kb on + strandat 534.017 kb on + strandat 534.028 kb on + strandat 534.029 kb on - strandat 534.031 kb on + strandat 534.052 kb on + strandat 534.097 kb on - strandat 534.162 kb on + strandat 534.250 kb on + strand, within BACOVA_00278at 534.406 kb on + strand, within BACOVA_00278at 534.406 kb on + strand, within BACOVA_00278at 534.406 kb on + strand, within BACOVA_00278at 534.407 kb on - strand, within BACOVA_00278at 534.496 kb on - strand, within BACOVA_00278at 534.510 kb on - strand, within BACOVA_00278at 534.512 kb on + strand, within BACOVA_00278at 534.574 kb on + strand, within BACOVA_00278at 534.575 kb on - strand, within BACOVA_00278at 534.575 kb on - strand, within BACOVA_00278at 534.631 kb on + strand, within BACOVA_00278at 534.638 kb on + strand, within BACOVA_00278at 534.639 kb on - strand, within BACOVA_00278at 534.724 kb on + strand, within BACOVA_00278at 534.754 kb on + strand, within BACOVA_00278at 534.758 kb on + strand, within BACOVA_00278at 534.770 kb on + strand, within BACOVA_00278at 534.882 kb on + strand, within BACOVA_00278at 534.934 kb on + strand, within BACOVA_00278at 534.934 kb on + strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.939 kb on + strand, within BACOVA_00278at 534.939 kb on + strand, within BACOVA_00278at 534.969 kb on + strand, within BACOVA_00278at 534.971 kb on + strand, within BACOVA_00278at 535.045 kb on - strand, within BACOVA_00278at 535.050 kb on + strand, within BACOVA_00278at 535.182 kb on - strand, within BACOVA_00278at 535.214 kb on - strand, within BACOVA_00278at 535.233 kb on + strand, within BACOVA_00278at 535.233 kb on + strand, within BACOVA_00278at 535.256 kb on - strand, within BACOVA_00278at 535.263 kb on + strand, within BACOVA_00278at 535.264 kb on - strand, within BACOVA_00278at 535.318 kb on - strand, within BACOVA_00278at 535.413 kb on + strand, within BACOVA_00278at 535.417 kb on - strand, within BACOVA_00278at 535.429 kb on - strand, within BACOVA_00278at 535.429 kb on - strand, within BACOVA_00278at 535.429 kb on - strand, within BACOVA_00278at 535.429 kb on - strand, within BACOVA_00278at 535.501 kb on + strand, within BACOVA_00278at 535.502 kb on - strand, within BACOVA_00278at 535.600 kb on + strandat 535.608 kb on + strandat 535.609 kb on - strandat 535.663 kb on + strandat 535.664 kb on - strandat 535.666 kb on + strandat 535.666 kb on + strandat 535.666 kb on + strandat 535.667 kb on - strandat 535.667 kb on - strandat 535.704 kb on - strandat 535.711 kb on + strandat 535.712 kb on - strandat 535.731 kb on - strandat 535.736 kb on - strandat 535.736 kb on - strandat 535.736 kb on - strandat 535.761 kb on + strandat 535.788 kb on + strandat 535.826 kb on + strandat 535.827 kb on - strandat 535.828 kb on + strandat 535.875 kb on + strandat 535.875 kb on + strandat 535.875 kb on + strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.895 kb on - strandat 535.935 kb on - strandat 535.935 kb on - strandat 535.955 kb on + strand, within BACOVA_00279at 535.955 kb on + strand, within BACOVA_00279at 535.956 kb on - strand, within BACOVA_00279at 536.135 kb on + strand, within BACOVA_00279at 536.136 kb on - strand, within BACOVA_00279at 536.192 kb on + strand, within BACOVA_00279at 536.192 kb on + strand, within BACOVA_00279at 536.193 kb on - strand, within BACOVA_00279at 536.193 kb on - strand, within BACOVA_00279at 536.195 kb on - strand, within BACOVA_00279at 536.199 kb on - strand, within BACOVA_00279at 536.207 kb on + strand, within BACOVA_00279at 536.207 kb on + strand, within BACOVA_00279at 536.353 kb on + strand, within BACOVA_00279at 536.377 kb on + strand, within BACOVA_00279at 536.383 kb on - strand, within BACOVA_00279at 536.412 kb on + strand, within BACOVA_00279at 536.448 kb on + strand, within BACOVA_00279at 536.449 kb on - strand, within BACOVA_00279at 536.455 kb on + strand, within BACOVA_00279at 536.455 kb on + strand, within BACOVA_00279at 536.456 kb on - strand, within BACOVA_00279at 536.469 kb on - strand, within BACOVA_00279at 536.469 kb on - strand, within BACOVA_00279at 536.469 kb on - strand, within BACOVA_00279at 536.479 kb on + strand, within BACOVA_00279at 536.558 kb on + strand, within BACOVA_00279at 536.573 kb on + strand, within BACOVA_00279at 536.579 kb on + strand, within BACOVA_00279at 536.616 kb on + strand, within BACOVA_00279at 536.636 kb on + strand, within BACOVA_00279at 536.647 kb on + strand, within BACOVA_00279at 536.687 kb on + strand, within BACOVA_00279at 536.688 kb on - strand, within BACOVA_00279

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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533,091 + BACOVA_00277 0.40 -0.4
533,100 + BACOVA_00277 0.40 -0.7
533,107 + BACOVA_00277 0.41 +0.2
533,171 + BACOVA_00277 0.45 +0.6
533,172 - BACOVA_00277 0.45 +0.3
533,177 + BACOVA_00277 0.45 -0.5
533,216 + BACOVA_00277 0.48 -0.9
533,217 - BACOVA_00277 0.48 +0.3
533,217 - BACOVA_00277 0.48 +0.1
533,252 - BACOVA_00277 0.50 -0.9
533,255 - BACOVA_00277 0.50 -0.6
533,287 - BACOVA_00277 0.52 +2.2
533,287 - BACOVA_00277 0.52 -3.2
533,323 + BACOVA_00277 0.55 -1.8
533,326 + BACOVA_00277 0.55 -1.4
533,406 + BACOVA_00277 0.60 -0.2
533,406 + BACOVA_00277 0.60 +0.4
533,407 - BACOVA_00277 0.60 -0.1
533,407 - BACOVA_00277 0.60 -0.5
533,407 - BACOVA_00277 0.60 +2.1
533,442 + BACOVA_00277 0.62 -1.1
533,445 - BACOVA_00277 0.62 -0.5
533,532 + BACOVA_00277 0.68 +1.9
533,532 + BACOVA_00277 0.68 +0.8
533,533 + BACOVA_00277 0.68 -1.2
533,533 - BACOVA_00277 0.68 +0.9
533,586 + BACOVA_00277 0.71 -0.9
533,596 + BACOVA_00277 0.72 +3.1
533,635 + BACOVA_00277 0.74 -1.4
533,635 + BACOVA_00277 0.74 +0.8
533,636 - BACOVA_00277 0.74 -0.2
533,664 - BACOVA_00277 0.76 +0.3
533,695 + BACOVA_00277 0.78 +0.1
533,843 + BACOVA_00277 0.88 -1.2
533,882 - -0.2
533,912 - +0.5
533,957 + -1.7
533,958 - -0.5
533,962 + +0.4
533,963 - +0.3
534,006 - +1.6
534,012 + -0.2
534,017 + -1.2
534,028 + -0.7
534,029 - +0.2
534,031 + +0.8
534,052 + -1.0
534,097 - +1.1
534,162 + -0.1
534,250 + BACOVA_00278 0.13 +0.2
534,406 + BACOVA_00278 0.22 +0.6
534,406 + BACOVA_00278 0.22 -0.5
534,406 + BACOVA_00278 0.22 +0.8
534,407 - BACOVA_00278 0.22 +0.3
534,496 - BACOVA_00278 0.27 +2.1
534,510 - BACOVA_00278 0.28 -1.7
534,512 + BACOVA_00278 0.28 +0.2
534,574 + BACOVA_00278 0.32 -0.2
534,575 - BACOVA_00278 0.32 -0.4
534,575 - BACOVA_00278 0.32 +0.2
534,631 + BACOVA_00278 0.35 -1.9
534,638 + BACOVA_00278 0.36 -1.0
534,639 - BACOVA_00278 0.36 -0.8
534,724 + BACOVA_00278 0.41 -1.4
534,754 + BACOVA_00278 0.43 +0.7
534,758 + BACOVA_00278 0.43 -0.9
534,770 + BACOVA_00278 0.44 +0.6
534,882 + BACOVA_00278 0.50 +2.2
534,934 + BACOVA_00278 0.53 -0.3
534,934 + BACOVA_00278 0.53 -0.0
534,938 - BACOVA_00278 0.54 +0.1
534,938 - BACOVA_00278 0.54 -0.2
534,938 - BACOVA_00278 0.54 -1.6
534,939 + BACOVA_00278 0.54 -0.7
534,939 + BACOVA_00278 0.54 -1.7
534,969 + BACOVA_00278 0.56 -1.1
534,971 + BACOVA_00278 0.56 -1.1
535,045 - BACOVA_00278 0.60 -0.5
535,050 + BACOVA_00278 0.60 +0.2
535,182 - BACOVA_00278 0.68 +0.1
535,214 - BACOVA_00278 0.70 -0.5
535,233 + BACOVA_00278 0.71 +0.3
535,233 + BACOVA_00278 0.71 -1.0
535,256 - BACOVA_00278 0.73 -1.0
535,263 + BACOVA_00278 0.73 -1.9
535,264 - BACOVA_00278 0.73 -1.3
535,318 - BACOVA_00278 0.76 -0.9
535,413 + BACOVA_00278 0.82 -1.5
535,417 - BACOVA_00278 0.82 +2.3
535,429 - BACOVA_00278 0.83 +2.1
535,429 - BACOVA_00278 0.83 +0.3
535,429 - BACOVA_00278 0.83 -1.4
535,429 - BACOVA_00278 0.83 +0.3
535,501 + BACOVA_00278 0.87 -0.0
535,502 - BACOVA_00278 0.87 +0.4
535,600 + -0.1
535,608 + -2.6
535,609 - -0.5
535,663 + +2.3
535,664 - +0.0
535,666 + +0.8
535,666 + +1.1
535,666 + -1.1
535,667 - -0.5
535,667 - -0.2
535,704 - -0.6
535,711 + +1.6
535,712 - +0.5
535,731 - +0.6
535,736 - -1.5
535,736 - +2.9
535,736 - +0.3
535,761 + -0.1
535,788 + +0.5
535,826 + +1.4
535,827 - +2.9
535,828 + +0.3
535,875 + +0.6
535,875 + +0.4
535,875 + +0.1
535,877 + +0.5
535,877 + +0.3
535,877 + -0.1
535,877 + +2.2
535,895 - +2.1
535,935 - +0.1
535,935 - +0.6
535,955 + BACOVA_00279 0.11 -1.4
535,955 + BACOVA_00279 0.11 +0.9
535,956 - BACOVA_00279 0.11 +0.1
536,135 + BACOVA_00279 0.22 +0.1
536,136 - BACOVA_00279 0.22 +2.3
536,192 + BACOVA_00279 0.25 +1.1
536,192 + BACOVA_00279 0.25 -2.4
536,193 - BACOVA_00279 0.25 +1.4
536,193 - BACOVA_00279 0.25 +1.3
536,195 - BACOVA_00279 0.25 +0.6
536,199 - BACOVA_00279 0.26 -0.2
536,207 + BACOVA_00279 0.26 -1.1
536,207 + BACOVA_00279 0.26 +0.4
536,353 + BACOVA_00279 0.35 +0.5
536,377 + BACOVA_00279 0.36 -0.3
536,383 - BACOVA_00279 0.37 +1.2
536,412 + BACOVA_00279 0.38 +0.2
536,448 + BACOVA_00279 0.40 -0.6
536,449 - BACOVA_00279 0.41 -0.2
536,455 + BACOVA_00279 0.41 +0.3
536,455 + BACOVA_00279 0.41 -0.5
536,456 - BACOVA_00279 0.41 +0.5
536,469 - BACOVA_00279 0.42 -2.2
536,469 - BACOVA_00279 0.42 +0.3
536,469 - BACOVA_00279 0.42 +0.2
536,479 + BACOVA_00279 0.42 -1.0
536,558 + BACOVA_00279 0.47 +0.4
536,573 + BACOVA_00279 0.48 -1.2
536,579 + BACOVA_00279 0.48 -2.0
536,616 + BACOVA_00279 0.50 -1.8
536,636 + BACOVA_00279 0.52 +0.1
536,647 + BACOVA_00279 0.52 -1.6
536,687 + BACOVA_00279 0.55 -1.5
536,688 - BACOVA_00279 0.55 +2.2

Or see this region's nucleotide sequence