Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00966

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00964 and MPMX26_00965 are separated by 79 nucleotidesMPMX26_00965 and MPMX26_00966 are separated by 12 nucleotidesMPMX26_00966 and MPMX26_00967 overlap by 37 nucleotidesMPMX26_00967 and MPMX26_00968 overlap by 7 nucleotides MPMX26_00964: MPMX26_00964 - Protein hcp1, at 1,014,230 to 1,014,733 _00964 MPMX26_00965: MPMX26_00965 - hypothetical protein, at 1,014,813 to 1,015,289 _00965 MPMX26_00966: MPMX26_00966 - hypothetical protein, at 1,015,302 to 1,017,110 _00966 MPMX26_00967: MPMX26_00967 - hypothetical protein, at 1,017,074 to 1,018,075 _00967 MPMX26_00968: MPMX26_00968 - hypothetical protein, at 1,018,069 to 1,019,490 _00968 Position (kb) 1015 1016 1017 1018Strain fitness (log2 ratio) -2 -1 0 1at 1014.306 kb on + strand, within MPMX26_00964at 1014.313 kb on + strand, within MPMX26_00964at 1014.319 kb on + strand, within MPMX26_00964at 1014.329 kb on + strand, within MPMX26_00964at 1014.343 kb on + strand, within MPMX26_00964at 1014.343 kb on + strand, within MPMX26_00964at 1014.343 kb on + strand, within MPMX26_00964at 1014.343 kb on + strand, within MPMX26_00964at 1014.366 kb on + strand, within MPMX26_00964at 1014.366 kb on + strand, within MPMX26_00964at 1014.366 kb on + strand, within MPMX26_00964at 1014.366 kb on + strand, within MPMX26_00964at 1014.366 kb on + strand, within MPMX26_00964at 1014.366 kb on + strand, within MPMX26_00964at 1014.366 kb on + strand, within MPMX26_00964at 1014.390 kb on + strand, within MPMX26_00964at 1014.390 kb on + strand, within MPMX26_00964at 1014.390 kb on + strand, within MPMX26_00964at 1014.404 kb on + strand, within MPMX26_00964at 1014.466 kb on + strand, within MPMX26_00964at 1014.467 kb on + strand, within MPMX26_00964at 1014.467 kb on + strand, within MPMX26_00964at 1014.467 kb on + strand, within MPMX26_00964at 1014.479 kb on + strand, within MPMX26_00964at 1014.505 kb on + strand, within MPMX26_00964at 1014.567 kb on + strand, within MPMX26_00964at 1014.567 kb on + strand, within MPMX26_00964at 1014.567 kb on + strand, within MPMX26_00964at 1014.567 kb on + strand, within MPMX26_00964at 1014.567 kb on + strand, within MPMX26_00964at 1014.567 kb on + strand, within MPMX26_00964at 1014.579 kb on + strand, within MPMX26_00964at 1014.602 kb on + strand, within MPMX26_00964at 1014.641 kb on + strand, within MPMX26_00964at 1014.642 kb on + strand, within MPMX26_00964at 1014.656 kb on + strand, within MPMX26_00964at 1014.658 kb on + strand, within MPMX26_00964at 1014.683 kb on + strandat 1014.718 kb on + strandat 1014.718 kb on + strandat 1014.728 kb on + strandat 1014.728 kb on + strandat 1014.728 kb on + strandat 1014.747 kb on + strandat 1014.747 kb on + strandat 1014.752 kb on + strandat 1014.752 kb on + strandat 1014.752 kb on + strandat 1014.752 kb on + strandat 1014.752 kb on + strandat 1014.752 kb on + strandat 1014.752 kb on + strandat 1014.752 kb on + strandat 1014.752 kb on + strandat 1014.900 kb on + strand, within MPMX26_00965at 1015.133 kb on + strand, within MPMX26_00965at 1015.160 kb on + strand, within MPMX26_00965at 1015.217 kb on + strand, within MPMX26_00965at 1015.308 kb on + strandat 1015.314 kb on + strandat 1015.668 kb on + strand, within MPMX26_00966at 1016.384 kb on + strand, within MPMX26_00966at 1017.063 kb on + strandat 1017.607 kb on + strand, within MPMX26_00967at 1017.607 kb on + strand, within MPMX26_00967at 1017.607 kb on + strand, within MPMX26_00967at 1017.889 kb on + strand, within MPMX26_00967at 1017.889 kb on + strand, within MPMX26_00967at 1017.940 kb on + strand, within MPMX26_00967at 1017.959 kb on + strand, within MPMX26_00967

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
1,014,306 + MPMX26_00964 0.15 +0.5
1,014,313 + MPMX26_00964 0.16 +0.2
1,014,319 + MPMX26_00964 0.18 -0.0
1,014,329 + MPMX26_00964 0.20 +0.3
1,014,343 + MPMX26_00964 0.22 +0.4
1,014,343 + MPMX26_00964 0.22 -0.3
1,014,343 + MPMX26_00964 0.22 +0.4
1,014,343 + MPMX26_00964 0.22 -0.1
1,014,366 + MPMX26_00964 0.27 +0.7
1,014,366 + MPMX26_00964 0.27 -0.6
1,014,366 + MPMX26_00964 0.27 +0.1
1,014,366 + MPMX26_00964 0.27 +0.5
1,014,366 + MPMX26_00964 0.27 -0.7
1,014,366 + MPMX26_00964 0.27 -0.4
1,014,366 + MPMX26_00964 0.27 +0.3
1,014,390 + MPMX26_00964 0.32 -0.1
1,014,390 + MPMX26_00964 0.32 -0.1
1,014,390 + MPMX26_00964 0.32 +0.8
1,014,404 + MPMX26_00964 0.35 +0.1
1,014,466 + MPMX26_00964 0.47 +0.1
1,014,467 + MPMX26_00964 0.47 +0.2
1,014,467 + MPMX26_00964 0.47 +0.4
1,014,467 + MPMX26_00964 0.47 +0.1
1,014,479 + MPMX26_00964 0.49 +0.8
1,014,505 + MPMX26_00964 0.55 +0.6
1,014,567 + MPMX26_00964 0.67 -0.4
1,014,567 + MPMX26_00964 0.67 +0.7
1,014,567 + MPMX26_00964 0.67 -0.0
1,014,567 + MPMX26_00964 0.67 +0.4
1,014,567 + MPMX26_00964 0.67 -0.3
1,014,567 + MPMX26_00964 0.67 -0.2
1,014,579 + MPMX26_00964 0.69 +0.4
1,014,602 + MPMX26_00964 0.74 -0.1
1,014,641 + MPMX26_00964 0.82 +0.8
1,014,642 + MPMX26_00964 0.82 +0.7
1,014,656 + MPMX26_00964 0.85 +0.2
1,014,658 + MPMX26_00964 0.85 +0.6
1,014,683 + -0.1
1,014,718 + +0.2
1,014,718 + +0.2
1,014,728 + +0.5
1,014,728 + -0.1
1,014,728 + +0.6
1,014,747 + -0.1
1,014,747 + +0.6
1,014,752 + -1.9
1,014,752 + +0.2
1,014,752 + -1.3
1,014,752 + -0.3
1,014,752 + +0.4
1,014,752 + +0.5
1,014,752 + +0.1
1,014,752 + -0.0
1,014,752 + +0.1
1,014,900 + MPMX26_00965 0.18 +0.8
1,015,133 + MPMX26_00965 0.67 +0.1
1,015,160 + MPMX26_00965 0.73 -0.1
1,015,217 + MPMX26_00965 0.85 +0.8
1,015,308 + -0.5
1,015,314 + +0.4
1,015,668 + MPMX26_00966 0.20 +1.0
1,016,384 + MPMX26_00966 0.60 -0.0
1,017,063 + -0.7
1,017,607 + MPMX26_00967 0.53 +0.2
1,017,607 + MPMX26_00967 0.53 +1.0
1,017,607 + MPMX26_00967 0.53 -1.3
1,017,889 + MPMX26_00967 0.81 -0.8
1,017,889 + MPMX26_00967 0.81 +0.6
1,017,940 + MPMX26_00967 0.86 +0.5
1,017,959 + MPMX26_00967 0.88 -0.5

Or see this region's nucleotide sequence