Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF96

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF94 and GFF95 are separated by 16 nucleotidesGFF95 and GFF96 are separated by 155 nucleotidesGFF96 and GFF97 are separated by 283 nucleotides GFF94 - Probable signal peptide protein, at 103,666 to 104,229 GFF94 GFF95 - Probable signal peptide protein, at 104,246 to 104,803 GFF95 GFF96 - Outer membrane porin protein 32 precursor, at 104,959 to 105,999 GFF96 GFF97 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.-), at 106,283 to 107,110 GFF97 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1at 104.008 kb on + strand, within GFF94at 104.228 kb on - strandat 104.309 kb on + strand, within GFF95at 104.309 kb on + strand, within GFF95at 104.309 kb on + strand, within GFF95at 104.309 kb on + strand, within GFF95at 104.309 kb on + strand, within GFF95at 104.309 kb on + strand, within GFF95at 104.309 kb on + strand, within GFF95at 104.309 kb on + strand, within GFF95at 104.442 kb on + strand, within GFF95at 104.657 kb on + strand, within GFF95at 104.657 kb on + strand, within GFF95at 104.657 kb on + strand, within GFF95at 104.658 kb on - strand, within GFF95at 105.083 kb on + strand, within GFF96at 105.117 kb on - strand, within GFF96at 105.270 kb on - strand, within GFF96at 105.272 kb on + strand, within GFF96at 105.273 kb on - strand, within GFF96at 105.306 kb on - strand, within GFF96at 105.306 kb on - strand, within GFF96at 105.363 kb on - strand, within GFF96at 105.395 kb on + strand, within GFF96at 105.465 kb on - strand, within GFF96at 105.494 kb on + strand, within GFF96at 105.635 kb on + strand, within GFF96at 105.636 kb on - strand, within GFF96at 106.015 kb on + strandat 106.016 kb on - strandat 106.067 kb on + strandat 106.068 kb on - strandat 106.094 kb on - strandat 106.117 kb on - strandat 106.120 kb on + strandat 106.128 kb on - strandat 106.212 kb on + strandat 106.212 kb on + strandat 106.219 kb on + strandat 106.233 kb on + strandat 106.245 kb on + strandat 106.246 kb on - strandat 106.269 kb on + strandat 106.547 kb on + strand, within GFF97at 106.548 kb on - strand, within GFF97at 106.727 kb on + strand, within GFF97at 106.728 kb on - strand, within GFF97at 106.728 kb on - strand, within GFF97

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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104,008 + GFF94 0.61 -0.2
104,228 - -0.1
104,309 + GFF95 0.11 +0.1
104,309 + GFF95 0.11 -0.2
104,309 + GFF95 0.11 +0.1
104,309 + GFF95 0.11 +0.1
104,309 + GFF95 0.11 -0.1
104,309 + GFF95 0.11 +1.1
104,309 + GFF95 0.11 +0.5
104,309 + GFF95 0.11 -1.4
104,442 + GFF95 0.35 -0.4
104,657 + GFF95 0.74 +0.1
104,657 + GFF95 0.74 -0.0
104,657 + GFF95 0.74 +0.5
104,658 - GFF95 0.74 +0.1
105,083 + GFF96 0.12 +0.8
105,117 - GFF96 0.15 +0.5
105,270 - GFF96 0.30 -0.2
105,272 + GFF96 0.30 +1.6
105,273 - GFF96 0.30 +1.2
105,306 - GFF96 0.33 -0.5
105,306 - GFF96 0.33 +0.5
105,363 - GFF96 0.39 +0.9
105,395 + GFF96 0.42 +0.6
105,465 - GFF96 0.49 +0.7
105,494 + GFF96 0.51 -0.0
105,635 + GFF96 0.65 +0.9
105,636 - GFF96 0.65 -0.6
106,015 + -0.2
106,016 - -2.8
106,067 + -0.4
106,068 - -0.7
106,094 - -0.8
106,117 - +0.2
106,120 + -0.1
106,128 - +0.5
106,212 + +0.8
106,212 + +0.2
106,219 + -0.4
106,233 + -0.8
106,245 + +0.1
106,246 - -0.3
106,269 + +1.0
106,547 + GFF97 0.32 +0.1
106,548 - GFF97 0.32 +1.2
106,727 + GFF97 0.54 -1.0
106,728 - GFF97 0.54 -0.8
106,728 - GFF97 0.54 -1.3

Or see this region's nucleotide sequence