Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF941 and GFF942 are separated by 510 nucleotides GFF942 and GFF943 overlap by 4 nucleotides GFF943 and GFF944 are separated by 9 nucleotides
GFF941 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 674,231 to 675,331
GFF941
GFF942 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 675,842 to 676,720
GFF942
GFF943 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 676,717 to 677,580
GFF943
GFF944 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 677,590 to 679,188
GFF944
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1 at 674.930 kb on + strand, within GFF941 at 674.930 kb on + strand, within GFF941 at 674.930 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.940 kb on - strand, within GFF941 at 674.940 kb on - strand, within GFF941 at 674.940 kb on - strand, within GFF941 at 674.993 kb on + strand, within GFF941 at 674.994 kb on - strand, within GFF941 at 674.994 kb on - strand, within GFF941 at 675.015 kb on + strand, within GFF941 at 675.015 kb on + strand, within GFF941 at 675.329 kb on + strand at 675.524 kb on + strand at 675.533 kb on + strand at 675.534 kb on - strand at 675.748 kb on + strand at 676.027 kb on - strand, within GFF942 at 676.054 kb on - strand, within GFF942 at 676.054 kb on - strand, within GFF942 at 676.282 kb on - strand, within GFF942 at 676.469 kb on + strand, within GFF942 at 676.470 kb on - strand, within GFF942 at 676.926 kb on - strand, within GFF943 at 677.153 kb on + strand, within GFF943 at 677.153 kb on + strand, within GFF943 at 677.154 kb on - strand, within GFF943 at 677.208 kb on - strand, within GFF943 at 677.386 kb on + strand, within GFF943 at 677.387 kb on - strand, within GFF943
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 674,930 + GFF941 0.63 -0.3 674,930 + GFF941 0.63 +0.5 674,930 + GFF941 0.63 +0.2 674,939 + GFF941 0.64 -0.8 674,939 + GFF941 0.64 -0.2 674,939 + GFF941 0.64 +1.3 674,939 + GFF941 0.64 -0.5 674,939 + GFF941 0.64 +0.2 674,939 + GFF941 0.64 -2.7 674,939 + GFF941 0.64 -0.4 674,940 - GFF941 0.64 +1.2 674,940 - GFF941 0.64 +0.6 674,940 - GFF941 0.64 +0.3 674,993 + GFF941 0.69 -0.1 674,994 - GFF941 0.69 +0.1 674,994 - GFF941 0.69 -0.1 675,015 + GFF941 0.71 +1.0 675,015 + GFF941 0.71 +1.0 675,329 + -0.2 675,524 + +0.3 675,533 + -0.1 675,534 - +0.7 675,748 + +0.3 676,027 - GFF942 0.21 -0.1 676,054 - GFF942 0.24 -0.1 676,054 - GFF942 0.24 -1.7 676,282 - GFF942 0.50 -0.2 676,469 + GFF942 0.71 -0.6 676,470 - GFF942 0.71 -0.0 676,926 - GFF943 0.24 +0.5 677,153 + GFF943 0.50 +0.4 677,153 + GFF943 0.50 -0.6 677,154 - GFF943 0.51 -0.8 677,208 - GFF943 0.57 -0.3 677,386 + GFF943 0.77 +0.6 677,387 - GFF943 0.78 -0.2
Or see this region's nucleotide sequence