Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF816 and GFF817 are separated by 20 nucleotides GFF817 and GFF818 are separated by 36 nucleotides GFF818 and GFF819 are separated by 259 nucleotides GFF819 and GFF820 are separated by 71 nucleotides
GFF816 - FIG015287: Zinc protease, at 510,930 to 512,267
GFF816
GFF817 - Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-), at 512,288 to 512,902
GFF817
GFF818 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 512,939 to 513,457
GFF818
GFF819 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 513,717 to 514,379
GFF819
GFF820 - LSU ribosomal protein L25p, at 514,451 to 515,083
GFF820
Position (kb) 512
513
514 Strain fitness (log2 ratio) -2
-1
0
1 at 512.056 kb on - strand, within GFF816 at 512.148 kb on + strand at 512.275 kb on + strand at 512.275 kb on + strand at 512.276 kb on - strand at 512.276 kb on - strand at 512.682 kb on + strand, within GFF817 at 512.683 kb on - strand, within GFF817 at 512.683 kb on - strand, within GFF817 at 512.726 kb on + strand, within GFF817 at 512.726 kb on + strand, within GFF817 at 512.726 kb on + strand, within GFF817 at 512.727 kb on - strand, within GFF817 at 512.780 kb on + strand, within GFF817 at 512.781 kb on - strand, within GFF817 at 512.928 kb on + strand at 512.928 kb on + strand at 512.928 kb on + strand at 512.933 kb on + strand at 513.455 kb on + strand at 513.455 kb on + strand at 513.455 kb on + strand at 513.455 kb on + strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.456 kb on - strand at 513.559 kb on + strand at 513.695 kb on - strand at 513.695 kb on - strand at 514.452 kb on + strand at 514.452 kb on + strand at 514.452 kb on + strand at 514.452 kb on + strand at 514.452 kb on + strand at 514.452 kb on + strand at 514.452 kb on + strand at 514.453 kb on - strand at 514.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 512,056 - GFF816 0.84 -0.3 512,148 + -0.2 512,275 + -0.2 512,275 + +0.7 512,276 - -0.8 512,276 - -1.3 512,682 + GFF817 0.64 -0.7 512,683 - GFF817 0.64 -0.2 512,683 - GFF817 0.64 -0.1 512,726 + GFF817 0.71 +0.0 512,726 + GFF817 0.71 -1.0 512,726 + GFF817 0.71 -0.4 512,727 - GFF817 0.71 -0.9 512,780 + GFF817 0.80 -0.2 512,781 - GFF817 0.80 -0.5 512,928 + +0.5 512,928 + +0.5 512,928 + +0.1 512,933 + -1.7 513,455 + -0.1 513,455 + +0.2 513,455 + -0.2 513,455 + +1.2 513,456 - +0.2 513,456 - -0.1 513,456 - +0.0 513,456 - +0.2 513,456 - -0.1 513,456 - -0.0 513,456 - -0.2 513,456 - -0.0 513,456 - -0.2 513,456 - +0.2 513,559 + -1.8 513,695 - -0.5 513,695 - +0.0 514,452 + +0.9 514,452 + +0.0 514,452 + -0.1 514,452 + -0.6 514,452 + -1.7 514,452 + +1.4 514,452 + +0.0 514,453 - +0.6 514,453 - -0.9
Or see this region's nucleotide sequence