Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF72

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF71 and GFF72 overlap by 4 nucleotidesGFF72 and GFF73 overlap by 1 nucleotidesGFF73 and GFF74 overlap by 14 nucleotidesGFF74 and GFF75 overlap by 4 nucleotides GFF71 - Predicted secretion system X protein GspD-like, at 70,622 to 72,694 GFF71 GFF72 - Predicted secretion system X protein GspG-like, at 72,691 to 73,167 GFF72 GFF73 - Predicted secretion system X protein GspG-like 2, at 73,167 to 73,550 GFF73 GFF74 - Predicted secretion system X pseudopilin PulG-like, at 73,537 to 74,055 GFF74 GFF75 - Transcription regulator like protein EpsA, at 74,052 to 74,840 GFF75 Position (kb) 72 73 74Strain fitness (log2 ratio) -1 0 1at 72.051 kb on - strand, within GFF71at 73.106 kb on - strand, within GFF72at 73.536 kb on + strandat 73.981 kb on + strand, within GFF74at 73.982 kb on - strand, within GFF74

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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72,051 - GFF71 0.69 -1.2
73,106 - GFF72 0.87 +0.4
73,536 + -0.6
73,981 + GFF74 0.86 +0.6
73,982 - GFF74 0.86 -0.8

Or see this region's nucleotide sequence