Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF688

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF686 and GFF687 are separated by 236 nucleotidesGFF687 and GFF688 are separated by 85 nucleotidesGFF688 and GFF689 are separated by 40 nucleotides GFF686 - Biotin synthesis protein BioC, at 367,960 to 368,838 GFF686 GFF687 - Probable transmembrane protein, at 369,075 to 369,506 GFF687 GFF688 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 369,592 to 370,797 GFF688 GFF689 - Cytochrome c oxidase polypeptide I (EC 1.9.3.1), at 370,838 to 372,460 GFF689 Position (kb) 369 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1at 368.934 kb on + strandat 368.934 kb on + strandat 368.935 kb on - strandat 368.935 kb on - strandat 369.032 kb on + strandat 369.032 kb on + strandat 369.032 kb on + strandat 369.032 kb on + strandat 369.032 kb on + strandat 369.032 kb on + strandat 369.032 kb on + strandat 369.032 kb on + strandat 369.033 kb on - strandat 369.033 kb on - strandat 369.033 kb on - strandat 369.132 kb on + strand, within GFF687at 369.132 kb on + strand, within GFF687at 369.132 kb on + strand, within GFF687at 369.132 kb on + strand, within GFF687at 369.132 kb on + strand, within GFF687at 369.132 kb on + strand, within GFF687at 369.132 kb on + strand, within GFF687at 369.132 kb on + strand, within GFF687at 369.132 kb on + strand, within GFF687at 369.133 kb on - strand, within GFF687at 369.133 kb on - strand, within GFF687at 369.133 kb on - strand, within GFF687at 369.133 kb on - strand, within GFF687at 369.252 kb on + strand, within GFF687at 369.252 kb on + strand, within GFF687at 369.252 kb on + strand, within GFF687at 369.252 kb on + strand, within GFF687at 369.253 kb on + strand, within GFF687at 369.284 kb on - strand, within GFF687at 369.482 kb on - strandat 369.482 kb on - strandat 369.522 kb on + strandat 369.561 kb on + strandat 369.569 kb on + strandat 369.569 kb on + strandat 369.569 kb on + strandat 369.570 kb on - strandat 369.573 kb on + strandat 369.573 kb on + strandat 369.573 kb on + strandat 369.573 kb on + strandat 369.573 kb on + strandat 369.574 kb on - strandat 369.574 kb on - strandat 369.574 kb on - strandat 369.574 kb on - strandat 369.574 kb on - strandat 369.575 kb on + strandat 369.575 kb on + strandat 369.576 kb on - strandat 369.597 kb on + strandat 369.597 kb on + strandat 369.598 kb on - strandat 369.606 kb on + strandat 369.606 kb on + strandat 369.856 kb on + strand, within GFF688at 369.857 kb on - strand, within GFF688at 369.857 kb on - strand, within GFF688at 369.857 kb on - strand, within GFF688at 370.063 kb on + strand, within GFF688at 370.069 kb on + strand, within GFF688at 370.069 kb on + strand, within GFF688at 370.070 kb on - strand, within GFF688at 370.070 kb on - strand, within GFF688at 370.168 kb on + strand, within GFF688at 370.169 kb on - strand, within GFF688at 370.346 kb on - strand, within GFF688at 370.384 kb on + strand, within GFF688at 370.385 kb on - strand, within GFF688at 370.385 kb on - strand, within GFF688at 370.423 kb on + strand, within GFF688at 370.423 kb on + strand, within GFF688at 370.424 kb on - strand, within GFF688at 370.424 kb on - strand, within GFF688at 370.528 kb on + strand, within GFF688at 370.528 kb on + strand, within GFF688at 370.528 kb on + strand, within GFF688at 370.815 kb on - strandat 370.922 kb on + strandat 370.955 kb on + strandat 370.956 kb on - strandat 370.956 kb on - strandat 370.956 kb on - strandat 370.956 kb on - strandat 371.583 kb on - strand, within GFF689at 371.583 kb on - strand, within GFF689at 371.621 kb on + strand, within GFF689at 371.621 kb on + strand, within GFF689at 371.621 kb on + strand, within GFF689at 371.622 kb on - strand, within GFF689at 371.711 kb on + strand, within GFF689at 371.712 kb on - strand, within GFF689

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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368,934 + +1.0
368,934 + +0.1
368,935 - +0.3
368,935 - -0.4
369,032 + +0.0
369,032 + -0.9
369,032 + +0.4
369,032 + +0.8
369,032 + +0.2
369,032 + -0.0
369,032 + +0.7
369,032 + -0.2
369,033 - -0.4
369,033 - -0.5
369,033 - -1.9
369,132 + GFF687 0.13 +0.1
369,132 + GFF687 0.13 -0.9
369,132 + GFF687 0.13 -0.2
369,132 + GFF687 0.13 +0.0
369,132 + GFF687 0.13 +0.4
369,132 + GFF687 0.13 -0.2
369,132 + GFF687 0.13 +0.7
369,132 + GFF687 0.13 -1.2
369,132 + GFF687 0.13 +1.0
369,133 - GFF687 0.13 -3.3
369,133 - GFF687 0.13 -2.0
369,133 - GFF687 0.13 -1.0
369,133 - GFF687 0.13 -1.4
369,252 + GFF687 0.41 -0.2
369,252 + GFF687 0.41 -0.2
369,252 + GFF687 0.41 +0.1
369,252 + GFF687 0.41 +0.4
369,253 + GFF687 0.41 +0.4
369,284 - GFF687 0.48 -1.1
369,482 - -1.7
369,482 - -0.7
369,522 + +0.0
369,561 + -0.7
369,569 + +0.4
369,569 + -0.4
369,569 + -0.4
369,570 - -0.2
369,573 + -0.6
369,573 + +0.8
369,573 + -0.7
369,573 + +1.4
369,573 + -0.1
369,574 - -0.2
369,574 - -1.3
369,574 - -2.3
369,574 - -1.9
369,574 - -0.7
369,575 + -0.9
369,575 + -1.2
369,576 - -3.1
369,597 + -1.8
369,597 + -1.2
369,598 - -1.9
369,606 + -1.9
369,606 + -1.8
369,856 + GFF688 0.22 -2.0
369,857 - GFF688 0.22 -2.4
369,857 - GFF688 0.22 -2.3
369,857 - GFF688 0.22 -1.9
370,063 + GFF688 0.39 -2.0
370,069 + GFF688 0.40 -2.1
370,069 + GFF688 0.40 -3.6
370,070 - GFF688 0.40 -0.9
370,070 - GFF688 0.40 -0.6
370,168 + GFF688 0.48 -2.2
370,169 - GFF688 0.48 -2.6
370,346 - GFF688 0.63 -1.1
370,384 + GFF688 0.66 -2.6
370,385 - GFF688 0.66 -2.5
370,385 - GFF688 0.66 -2.1
370,423 + GFF688 0.69 -1.9
370,423 + GFF688 0.69 -2.4
370,424 - GFF688 0.69 -0.4
370,424 - GFF688 0.69 -1.9
370,528 + GFF688 0.78 +0.2
370,528 + GFF688 0.78 -0.0
370,528 + GFF688 0.78 -0.6
370,815 - -1.6
370,922 + -1.7
370,955 + -2.2
370,956 - -0.6
370,956 - -2.5
370,956 - -2.4
370,956 - -1.4
371,583 - GFF689 0.46 -0.6
371,583 - GFF689 0.46 -0.9
371,621 + GFF689 0.48 -0.2
371,621 + GFF689 0.48 -1.8
371,621 + GFF689 0.48 -0.2
371,622 - GFF689 0.48 -1.8
371,711 + GFF689 0.54 -1.8
371,712 - GFF689 0.54 -1.7

Or see this region's nucleotide sequence