Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF619 and GFF620 are separated by 145 nucleotides GFF620 and GFF621 are separated by 2 nucleotides GFF621 and GFF622 overlap by 4 nucleotides
GFF619 - Enoyl-CoA hydratase (EC 4.2.1.17), at 295,480 to 296,268
GFF619
GFF620 - Enoyl-CoA hydratase (EC 4.2.1.17), at 296,414 to 297,208
GFF620
GFF621 - Phenylacetic acid degradation protein PaaD, thioesterase, at 297,211 to 297,651
GFF621
GFF622 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 297,648 to 298,943
GFF622
Position (kb) 297
298 Strain fitness (log2 ratio) -2
-1
0
1 at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.313 kb on + strand at 296.313 kb on + strand at 296.313 kb on + strand at 296.314 kb on - strand at 296.314 kb on - strand at 296.368 kb on - strand at 296.435 kb on + strand at 296.435 kb on + strand at 296.436 kb on - strand at 297.149 kb on + strand at 297.150 kb on - strand at 297.547 kb on + strand, within GFF621 at 297.547 kb on + strand, within GFF621 at 297.547 kb on + strand, within GFF621 at 297.867 kb on + strand, within GFF622 at 297.867 kb on + strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 298.050 kb on + strand, within GFF622 at 298.051 kb on - strand, within GFF622 at 298.089 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on - strand, within GFF622 at 298.204 kb on - strand, within GFF622 at 298.204 kb on - strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.354 kb on - strand, within GFF622 at 298.441 kb on - strand, within GFF622
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 296,311 + +0.2 296,311 + -1.0 296,311 + -0.4 296,311 + +0.1 296,311 + -0.5 296,311 + -0.5 296,312 - -0.2 296,312 - -0.2 296,312 - +0.1 296,312 - +1.4 296,312 - +0.2 296,313 + -0.3 296,313 + -0.1 296,313 + -0.7 296,314 - -0.4 296,314 - -0.3 296,368 - +0.4 296,435 + -0.1 296,435 + +0.1 296,436 - +1.5 297,149 + -0.5 297,150 - +0.5 297,547 + GFF621 0.76 -0.3 297,547 + GFF621 0.76 -0.3 297,547 + GFF621 0.76 +0.1 297,867 + GFF622 0.17 +0.6 297,867 + GFF622 0.17 -0.6 297,868 - GFF622 0.17 +0.0 297,868 - GFF622 0.17 -0.7 297,868 - GFF622 0.17 +0.3 298,050 + GFF622 0.31 -1.1 298,051 - GFF622 0.31 +0.3 298,089 + GFF622 0.34 +0.2 298,203 + GFF622 0.43 -0.1 298,203 + GFF622 0.43 -0.0 298,203 + GFF622 0.43 -0.0 298,203 + GFF622 0.43 -0.1 298,203 - GFF622 0.43 +0.3 298,204 - GFF622 0.43 +0.1 298,204 - GFF622 0.43 +0.4 298,353 + GFF622 0.54 -0.8 298,353 + GFF622 0.54 -0.1 298,353 + GFF622 0.54 -0.2 298,353 + GFF622 0.54 -1.8 298,354 - GFF622 0.54 +0.0 298,441 - GFF622 0.61 -0.1
Or see this region's nucleotide sequence