Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5852

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5851 and GFF5852 are separated by 122 nucleotidesGFF5852 and GFF5853 are separated by 584 nucleotides GFF5851 - Alcohol dehydrogenase (EC 1.1.1.1), at 54,261 to 54,797 GFF5851 GFF5852 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 54,920 to 55,882 GFF5852 GFF5853 - Enoyl-CoA hydratase (EC 4.2.1.17), at 56,467 to 57,015 GFF5853 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 53.984 kb on + strandat 53.984 kb on + strandat 53.985 kb on - strandat 53.985 kb on - strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.020 kb on - strandat 54.087 kb on - strandat 54.087 kb on - strandat 54.099 kb on + strandat 54.152 kb on - strandat 54.193 kb on + strandat 54.209 kb on - strandat 54.463 kb on - strand, within GFF5851at 54.463 kb on - strand, within GFF5851at 54.533 kb on - strand, within GFF5851at 54.592 kb on + strand, within GFF5851at 54.646 kb on + strand, within GFF5851at 54.646 kb on + strand, within GFF5851at 54.647 kb on - strand, within GFF5851at 54.647 kb on - strand, within GFF5851at 54.672 kb on + strand, within GFF5851at 54.672 kb on + strand, within GFF5851at 54.673 kb on - strand, within GFF5851at 54.673 kb on - strand, within GFF5851at 54.674 kb on + strand, within GFF5851at 54.675 kb on - strand, within GFF5851at 54.675 kb on - strand, within GFF5851at 54.690 kb on - strand, within GFF5851at 54.795 kb on + strandat 54.795 kb on + strandat 54.796 kb on - strandat 54.815 kb on + strandat 54.847 kb on + strandat 54.847 kb on + strandat 54.847 kb on + strandat 54.848 kb on - strandat 54.848 kb on - strandat 54.848 kb on - strandat 54.848 kb on - strandat 54.865 kb on + strandat 54.866 kb on - strandat 55.009 kb on + strandat 55.009 kb on + strandat 55.009 kb on + strandat 55.009 kb on + strandat 55.009 kb on + strandat 55.010 kb on - strandat 55.010 kb on - strandat 55.101 kb on + strand, within GFF5852at 55.101 kb on + strand, within GFF5852at 55.101 kb on + strand, within GFF5852at 55.101 kb on + strand, within GFF5852at 55.101 kb on + strand, within GFF5852at 55.101 kb on + strand, within GFF5852at 55.101 kb on + strand, within GFF5852at 55.101 kb on + strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.102 kb on - strand, within GFF5852at 55.106 kb on + strand, within GFF5852at 55.106 kb on + strand, within GFF5852at 55.106 kb on + strand, within GFF5852at 55.106 kb on + strand, within GFF5852at 55.106 kb on + strand, within GFF5852at 55.106 kb on + strand, within GFF5852at 55.107 kb on - strand, within GFF5852at 55.107 kb on - strand, within GFF5852at 55.107 kb on - strand, within GFF5852at 55.107 kb on - strand, within GFF5852at 55.227 kb on + strand, within GFF5852at 55.228 kb on - strand, within GFF5852at 55.228 kb on - strand, within GFF5852at 55.556 kb on - strand, within GFF5852at 55.566 kb on + strand, within GFF5852at 55.569 kb on - strand, within GFF5852at 55.569 kb on - strand, within GFF5852at 55.595 kb on - strand, within GFF5852at 55.678 kb on - strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.748 kb on - strand, within GFF5852at 55.748 kb on - strand, within GFF5852at 55.748 kb on - strand, within GFF5852at 55.748 kb on - strand, within GFF5852at 55.852 kb on - strandat 55.902 kb on + strandat 55.902 kb on + strandat 55.902 kb on + strandat 55.902 kb on + strandat 55.902 kb on + strandat 55.903 kb on - strandat 56.055 kb on + strandat 56.055 kb on + strandat 56.056 kb on - strandat 56.056 kb on - strandat 56.122 kb on + strandat 56.122 kb on + strandat 56.135 kb on + strandat 56.222 kb on + strandat 56.222 kb on + strandat 56.223 kb on - strandat 56.223 kb on - strandat 56.262 kb on - strandat 56.289 kb on + strandat 56.289 kb on + strandat 56.289 kb on + strandat 56.290 kb on - strandat 56.290 kb on - strandat 56.294 kb on + strandat 56.294 kb on + strandat 56.294 kb on + strandat 56.295 kb on - strandat 56.295 kb on - strandat 56.295 kb on - strandat 56.408 kb on - strandat 56.420 kb on + strandat 56.421 kb on - strandat 56.466 kb on - strandat 56.466 kb on - strandat 56.476 kb on + strandat 56.476 kb on + strandat 56.573 kb on + strand, within GFF5853at 56.574 kb on - strand, within GFF5853at 56.574 kb on - strand, within GFF5853at 56.574 kb on - strand, within GFF5853at 56.855 kb on + strand, within GFF5853at 56.855 kb on + strand, within GFF5853at 56.855 kb on + strand, within GFF5853at 56.856 kb on - strand, within GFF5853at 56.856 kb on - strand, within GFF5853

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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53,984 + -0.2
53,984 + -0.9
53,985 - -1.4
53,985 - +1.3
54,019 + +0.8
54,019 + -0.3
54,020 - +0.1
54,087 - +0.2
54,087 - -0.1
54,099 + -0.3
54,152 - -0.9
54,193 + +0.7
54,209 - +1.0
54,463 - GFF5851 0.38 -0.2
54,463 - GFF5851 0.38 -0.1
54,533 - GFF5851 0.51 -0.7
54,592 + GFF5851 0.62 +0.1
54,646 + GFF5851 0.72 +0.4
54,646 + GFF5851 0.72 +0.4
54,647 - GFF5851 0.72 +0.1
54,647 - GFF5851 0.72 +0.1
54,672 + GFF5851 0.77 -0.0
54,672 + GFF5851 0.77 +1.4
54,673 - GFF5851 0.77 -0.7
54,673 - GFF5851 0.77 -0.0
54,674 + GFF5851 0.77 -0.3
54,675 - GFF5851 0.77 -0.2
54,675 - GFF5851 0.77 +0.7
54,690 - GFF5851 0.80 +0.1
54,795 + +0.3
54,795 + -0.6
54,796 - -0.1
54,815 + -0.4
54,847 + -0.4
54,847 + -0.2
54,847 + -0.1
54,848 - +0.3
54,848 - -0.4
54,848 - -0.1
54,848 - -0.1
54,865 + -0.3
54,866 - -0.9
55,009 + -0.1
55,009 + +0.1
55,009 + +0.1
55,009 + +0.7
55,009 + -0.1
55,010 - +0.1
55,010 - -0.8
55,101 + GFF5852 0.19 -0.3
55,101 + GFF5852 0.19 -0.0
55,101 + GFF5852 0.19 +0.2
55,101 + GFF5852 0.19 -0.6
55,101 + GFF5852 0.19 -1.0
55,101 + GFF5852 0.19 +0.1
55,101 + GFF5852 0.19 -0.4
55,101 + GFF5852 0.19 -0.2
55,102 - GFF5852 0.19 -0.3
55,102 - GFF5852 0.19 +0.3
55,102 - GFF5852 0.19 +0.0
55,102 - GFF5852 0.19 -1.3
55,102 - GFF5852 0.19 +0.0
55,102 - GFF5852 0.19 -0.6
55,102 - GFF5852 0.19 -0.4
55,102 - GFF5852 0.19 -2.6
55,102 - GFF5852 0.19 -0.5
55,102 - GFF5852 0.19 -0.7
55,106 + GFF5852 0.19 -0.1
55,106 + GFF5852 0.19 -0.3
55,106 + GFF5852 0.19 +0.7
55,106 + GFF5852 0.19 -0.5
55,106 + GFF5852 0.19 -0.2
55,106 + GFF5852 0.19 +0.8
55,107 - GFF5852 0.19 -0.0
55,107 - GFF5852 0.19 -0.2
55,107 - GFF5852 0.19 +0.2
55,107 - GFF5852 0.19 +0.2
55,227 + GFF5852 0.32 +0.3
55,228 - GFF5852 0.32 -0.4
55,228 - GFF5852 0.32 +0.0
55,556 - GFF5852 0.66 -0.0
55,566 + GFF5852 0.67 +0.2
55,569 - GFF5852 0.67 +0.2
55,569 - GFF5852 0.67 +0.9
55,595 - GFF5852 0.70 -0.3
55,678 - GFF5852 0.79 -0.5
55,743 + GFF5852 0.85 +0.2
55,743 + GFF5852 0.85 +1.1
55,743 + GFF5852 0.85 -0.1
55,743 + GFF5852 0.85 -0.4
55,743 + GFF5852 0.85 +0.6
55,743 + GFF5852 0.85 -0.0
55,743 + GFF5852 0.85 -0.1
55,743 + GFF5852 0.85 -1.1
55,743 + GFF5852 0.85 -0.4
55,744 - GFF5852 0.86 -0.1
55,744 - GFF5852 0.86 +0.1
55,744 - GFF5852 0.86 +0.2
55,744 - GFF5852 0.86 -0.3
55,744 - GFF5852 0.86 -0.4
55,744 - GFF5852 0.86 +0.5
55,744 - GFF5852 0.86 +0.0
55,744 - GFF5852 0.86 -0.4
55,747 + GFF5852 0.86 +0.9
55,747 + GFF5852 0.86 -0.1
55,747 + GFF5852 0.86 -0.2
55,747 + GFF5852 0.86 -0.5
55,747 + GFF5852 0.86 +0.3
55,747 + GFF5852 0.86 -0.5
55,747 + GFF5852 0.86 +0.5
55,747 + GFF5852 0.86 -0.2
55,747 + GFF5852 0.86 +1.5
55,748 - GFF5852 0.86 -0.2
55,748 - GFF5852 0.86 -0.8
55,748 - GFF5852 0.86 -0.0
55,748 - GFF5852 0.86 -0.8
55,852 - -1.3
55,902 + -0.4
55,902 + -0.4
55,902 + +0.3
55,902 + +0.2
55,902 + +0.4
55,903 - -0.2
56,055 + -1.4
56,055 + -0.0
56,056 - -0.4
56,056 - -0.7
56,122 + -0.2
56,122 + -0.5
56,135 + -0.4
56,222 + -0.1
56,222 + -0.2
56,223 - +0.4
56,223 - +0.6
56,262 - +0.2
56,289 + -0.4
56,289 + +0.4
56,289 + +0.2
56,290 - -0.3
56,290 - -1.8
56,294 + -2.4
56,294 + -0.0
56,294 + +0.1
56,295 - +0.5
56,295 - -0.5
56,295 - +0.9
56,408 - -0.3
56,420 + +0.3
56,421 - -0.1
56,466 - +0.7
56,466 - -0.6
56,476 + -0.3
56,476 + +0.4
56,573 + GFF5853 0.19 -0.0
56,574 - GFF5853 0.19 +0.1
56,574 - GFF5853 0.19 +0.4
56,574 - GFF5853 0.19 +0.1
56,855 + GFF5853 0.71 +0.6
56,855 + GFF5853 0.71 -0.3
56,855 + GFF5853 0.71 +0.7
56,856 - GFF5853 0.71 -0.8
56,856 - GFF5853 0.71 +0.5

Or see this region's nucleotide sequence