Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5778

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,806,088	+		GFF5777	0.31	-0.5
2,806,247	+		GFF5777	0.47	-0.0
2,806,247	+		GFF5777	0.47	-0.1
2,806,247	+		GFF5777	0.47	-0.1
2,806,248	-		GFF5777	0.47	-0.7
2,806,248	-		GFF5777	0.47	-0.3
2,806,248	-		GFF5777	0.47	-1.1
2,806,248	-		GFF5777	0.47	-1.4
2,806,248	-		GFF5777	0.47	+0.0
2,806,248	-		GFF5777	0.47	-0.6
2,806,248	-		GFF5777	0.47	-0.0
2,806,334	+		GFF5777	0.56	-0.6
2,806,335	-		GFF5777	0.56	-0.4
2,806,712	+				-0.4
2,806,713	-				-0.1
2,806,713	-				+0.5
2,806,713	-				+0.7
2,807,204	+		GFF5778	0.31	+0.3
2,807,204	+		GFF5778	0.31	+1.3
2,807,204	+		GFF5778	0.31	+0.3
2,807,205	-		GFF5778	0.31	+0.5
2,807,205	-		GFF5778	0.31	-0.3
2,807,205	-		GFF5778	0.31	+0.9
2,807,447	+		GFF5778	0.52	-0.2
2,807,447	+		GFF5778	0.52	+0.2
2,807,448	-		GFF5778	0.52	+0.1
2,807,741	+		GFF5778	0.78	-0.4
2,807,982	-				-0.4
2,808,430	+		GFF5779	0.50	-0.5