Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5772

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,799,228	-				-0.0
2,799,228	-				-0.4
2,799,236	+				-1.2
2,799,236	+				-1.6
2,799,236	+				-0.1
2,799,236	+				-0.3
2,799,237	-				+0.3
2,799,452	+		GFF5771	0.19	-2.7
2,799,452	+		GFF5771	0.19	-3.4
2,799,452	+		GFF5771	0.19	-2.0
2,799,479	+		GFF5771	0.22	-3.3
2,799,491	+		GFF5771	0.24	-3.9
2,799,617	+		GFF5771	0.38	-2.7
2,799,617	+		GFF5771	0.38	-3.8
2,799,618	-		GFF5771	0.38	-2.5
2,799,618	-		GFF5771	0.38	-4.0
2,799,621	-		GFF5771	0.39	-2.9
2,799,764	+		GFF5771	0.55	-2.0
2,799,764	+		GFF5771	0.55	-2.2
2,799,764	+		GFF5771	0.55	-2.0
2,799,764	+		GFF5771	0.55	-3.8
2,800,103	+				-2.5
2,800,104	-				-0.7
2,800,104	-				-1.5
2,800,644	+		GFF5772	0.35	+0.3
2,800,779	+		GFF5772	0.45	-0.7
2,800,780	-		GFF5772	0.45	-2.8
2,801,284	-		GFF5772	0.82	-2.6
2,801,506	-				-4.2
2,801,506	-				-3.5
2,801,506	-				-4.4
2,801,573	+				+0.6
2,801,573	+				-0.8
2,801,573	+				+1.6
2,801,573	+				+0.3
2,801,574	-				-0.8
2,801,574	-				-0.4
2,801,574	-				-0.2
2,801,574	-				+0.1
2,801,643	+				-0.1
2,801,643	+				-0.4
2,801,644	-				-0.4
2,801,644	-				-1.2
2,801,764	+				-0.4
2,802,085	+		GFF5773	0.29	-0.3
2,802,085	+		GFF5773	0.29	-1.4
2,802,086	-		GFF5773	0.29	-0.3
2,802,086	-		GFF5773	0.29	-0.7
2,802,236	+		GFF5773	0.39	+0.0
2,802,304	+		GFF5773	0.43	-0.4
2,802,304	+		GFF5773	0.43	+1.0
2,802,305	-		GFF5773	0.43	+2.2