Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5726

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,754,413	+		GFF5724	0.83	+0.0
2,754,414	-		GFF5724	0.84	+1.8
2,754,414	-		GFF5724	0.84	-0.1
2,754,414	-		GFF5724	0.84	-0.5
2,754,434	+		GFF5724	0.87	-0.2
2,754,434	+		GFF5724	0.87	-0.1
2,754,435	-		GFF5724	0.87	+0.1
2,754,802	+		GFF5725	0.36	-0.1
2,754,802	+		GFF5725	0.36	-0.2
2,755,168	+		GFF5725	0.86	-0.1
2,755,168	+		GFF5725	0.86	+0.6
2,755,168	+		GFF5725	0.86	+0.3
2,755,168	+		GFF5725	0.86	-0.8
2,755,168	+		GFF5725	0.86	+0.3
2,755,168	+		GFF5725	0.86	-0.3
2,755,168	+		GFF5725	0.86	+0.0
2,755,169	-		GFF5725	0.87	-0.0
2,755,169	-		GFF5725	0.87	+0.4
2,755,169	-		GFF5725	0.87	+0.2
2,755,169	-		GFF5725	0.87	-0.4
2,755,169	-		GFF5725	0.87	-0.4
2,755,955	+		GFF5726	0.80	-1.1
2,755,956	-		GFF5726	0.80	+1.3
2,755,956	-		GFF5726	0.80	-2.5
2,756,112	-				+0.2
2,756,112	-				-0.4
2,756,231	-		GFF5727	0.13	-0.0
2,756,263	+		GFF5727	0.19	+0.3
2,756,264	-		GFF5727	0.19	-0.4
2,756,264	-		GFF5727	0.19	-0.3
2,756,266	+		GFF5727	0.19	+0.5
2,756,267	-		GFF5727	0.20	-0.0
2,756,267	-		GFF5727	0.20	-1.1
2,756,293	+		GFF5727	0.24	+0.3
2,756,293	+		GFF5727	0.24	-0.1
2,756,300	-		GFF5727	0.26	-0.2
2,756,402	-		GFF5727	0.44	+0.2
2,756,465	-		GFF5727	0.56	-0.8
2,756,548	+		GFF5727	0.71	-0.9
2,756,742	+				+0.1
2,756,743	-				+0.1
2,756,743	-				+0.2
2,756,743	-				+0.5
2,756,743	-				-0.5
2,757,043	-		GFF5728	0.26	-1.0