Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5709

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,732,133	+		GFF5708	0.35	+0.1
2,732,163	+		GFF5708	0.38	-0.0
2,732,466	+		GFF5708	0.67	-0.3
2,732,467	-		GFF5708	0.67	+0.0
2,732,514	+		GFF5708	0.72	-1.1
2,732,515	-		GFF5708	0.72	-0.0
2,732,625	+		GFF5708	0.83	+1.0
2,732,626	-		GFF5708	0.83	+0.3
2,733,923	+		GFF5709	0.76	+0.1
2,733,923	+		GFF5709	0.76	-0.3
2,733,924	-		GFF5709	0.76	+0.0
2,734,074	-		GFF5709	0.86	-0.4
2,734,074	-		GFF5709	0.86	+0.1
2,734,079	+		GFF5709	0.87	-0.3
2,734,238	+				+0.6
2,734,239	-				-0.1
2,734,239	-				-0.1
2,734,253	+				+0.7
2,734,253	+				-1.2
2,734,253	+				-0.8
2,734,253	+				-0.2
2,734,253	+				-0.0
2,734,254	-				-0.4
2,734,254	-				-0.4
2,734,292	-				-0.7
2,734,483	+		GFF5710	0.48	-0.2
2,734,483	+		GFF5710	0.48	-0.9
2,734,483	+		GFF5710	0.48	-0.1
2,734,484	-		GFF5710	0.48	-0.8
2,734,484	-		GFF5710	0.48	-0.1
2,734,484	-		GFF5710	0.48	+0.2
2,734,484	-		GFF5710	0.48	+0.8
2,734,759	-				-1.0
2,734,759	-				-0.1
2,734,766	+				-0.5
2,734,766	+				+1.6
2,734,767	-				-0.1
2,734,767	-				-0.2
2,734,768	+				-0.1
2,734,768	+				-0.2
2,734,769	-				+0.0
2,734,769	-				+0.1
2,734,769	-				-1.8
2,734,947	-				+0.2
2,734,947	-				-1.7
2,734,952	+				+0.7
2,734,952	+				+0.0
2,734,953	-				-0.0
2,734,953	-				+0.2
2,735,174	-		GFF5711	0.41	-0.2
2,735,182	-		GFF5711	0.43	-0.4