Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF553 and GFF554 are separated by 377 nucleotides GFF554 and GFF555 are separated by 5 nucleotides GFF555 and GFF556 overlap by 4 nucleotides GFF556 and GFF557 are separated by 2 nucleotides
GFF553 - ATP-dependent hsl protease ATP-binding subunit HslU, at 221,932 to 223,266
GFF553
GFF554 - Cell division protein MraZ, at 223,644 to 224,009
GFF554
GFF555 - rRNA small subunit methyltransferase H, at 224,015 to 224,941
GFF555
GFF556 - Cell division protein FtsL, at 224,938 to 225,243
GFF556
GFF557 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 225,246 to 226,979
GFF557
Position (kb) 224
225 Strain fitness (log2 ratio) -1
0
1 at 223.204 kb on + strand at 223.204 kb on + strand at 223.204 kb on + strand at 223.204 kb on + strand at 223.205 kb on - strand at 223.205 kb on - strand at 223.205 kb on - strand at 223.205 kb on - strand at 223.205 kb on - strand at 223.255 kb on + strand at 223.255 kb on + strand at 223.255 kb on + strand at 223.255 kb on + strand at 223.256 kb on - strand at 223.256 kb on - strand at 223.256 kb on - strand at 223.369 kb on + strand at 223.369 kb on + strand at 223.369 kb on + strand at 223.370 kb on - strand at 223.383 kb on + strand at 223.383 kb on + strand at 223.383 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.434 kb on + strand at 223.463 kb on + strand at 223.526 kb on + strand at 223.526 kb on + strand at 223.536 kb on + strand at 223.717 kb on + strand, within GFF554 at 223.717 kb on + strand, within GFF554 at 223.717 kb on + strand, within GFF554 at 223.941 kb on + strand, within GFF554 at 223.941 kb on + strand, within GFF554 at 223.941 kb on + strand, within GFF554 at 223.941 kb on + strand, within GFF554 at 224.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 223,204 + -0.3 223,204 + -1.2 223,204 + +0.7 223,204 + +1.4 223,205 - -1.1 223,205 - -0.2 223,205 - +0.2 223,205 - +0.1 223,205 - +0.1 223,255 + -0.3 223,255 + +0.6 223,255 + +0.5 223,255 + -0.1 223,256 - +1.4 223,256 - -0.5 223,256 - -0.1 223,369 + -0.3 223,369 + -0.9 223,369 + -0.8 223,370 - -0.4 223,383 + -0.7 223,383 + -0.5 223,383 + +0.2 223,420 + -0.4 223,420 + +1.5 223,420 + +0.1 223,420 + -0.3 223,420 + -1.7 223,420 + -0.2 223,420 + -0.3 223,420 + +0.3 223,434 + +0.7 223,463 + -0.1 223,526 + -0.3 223,526 + +0.3 223,536 + +0.2 223,717 + GFF554 0.20 +0.7 223,717 + GFF554 0.20 +0.3 223,717 + GFF554 0.20 -0.3 223,941 + GFF554 0.81 +0.8 223,941 + GFF554 0.81 +0.3 223,941 + GFF554 0.81 +0.3 223,941 + GFF554 0.81 +0.0 224,096 + -0.2
Or see this region's nucleotide sequence