Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF551 and GFF552 are separated by 97 nucleotides GFF552 and GFF553 overlap by 1 nucleotides GFF553 and GFF554 are separated by 377 nucleotides GFF554 and GFF555 are separated by 5 nucleotides
GFF551 - FIG00931886: hypothetical protein, at 219,412 to 221,289
GFF551
GFF552 - ATP-dependent protease HslV (EC 3.4.25.-), at 221,387 to 221,932
GFF552
GFF553 - ATP-dependent hsl protease ATP-binding subunit HslU, at 221,932 to 223,266
GFF553
GFF554 - Cell division protein MraZ, at 223,644 to 224,009
GFF554
GFF555 - rRNA small subunit methyltransferase H, at 224,015 to 224,941
GFF555
Position (kb) 221
222
223
224 Strain fitness (log2 ratio) -1
0
1 at 221.261 kb on - strand at 221.261 kb on - strand at 221.320 kb on + strand at 221.320 kb on + strand at 221.320 kb on + strand at 221.798 kb on + strand, within GFF552 at 221.799 kb on - strand, within GFF552 at 221.799 kb on - strand, within GFF552 at 221.897 kb on + strand at 221.897 kb on + strand at 221.897 kb on + strand at 221.897 kb on + strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 222.202 kb on + strand, within GFF553 at 222.202 kb on + strand, within GFF553 at 222.202 kb on + strand, within GFF553 at 222.203 kb on - strand, within GFF553 at 222.203 kb on - strand, within GFF553 at 222.814 kb on + strand, within GFF553 at 222.814 kb on + strand, within GFF553 at 222.815 kb on - strand, within GFF553 at 222.997 kb on + strand, within GFF553 at 222.997 kb on + strand, within GFF553 at 222.997 kb on + strand, within GFF553 at 223.204 kb on + strand at 223.204 kb on + strand at 223.204 kb on + strand at 223.204 kb on + strand at 223.205 kb on - strand at 223.205 kb on - strand at 223.205 kb on - strand at 223.205 kb on - strand at 223.205 kb on - strand at 223.255 kb on + strand at 223.255 kb on + strand at 223.255 kb on + strand at 223.255 kb on + strand at 223.256 kb on - strand at 223.256 kb on - strand at 223.256 kb on - strand at 223.369 kb on + strand at 223.369 kb on + strand at 223.369 kb on + strand at 223.370 kb on - strand at 223.383 kb on + strand at 223.383 kb on + strand at 223.383 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.420 kb on + strand at 223.434 kb on + strand at 223.463 kb on + strand at 223.526 kb on + strand at 223.526 kb on + strand at 223.536 kb on + strand at 223.717 kb on + strand, within GFF554 at 223.717 kb on + strand, within GFF554 at 223.717 kb on + strand, within GFF554 at 223.941 kb on + strand, within GFF554 at 223.941 kb on + strand, within GFF554 at 223.941 kb on + strand, within GFF554 at 223.941 kb on + strand, within GFF554 at 224.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 221,261 - -0.6 221,261 - +0.3 221,320 + -0.2 221,320 + -0.0 221,320 + -0.1 221,798 + GFF552 0.75 -0.3 221,799 - GFF552 0.75 -0.3 221,799 - GFF552 0.75 -0.0 221,897 + +0.0 221,897 + -1.0 221,897 + -0.2 221,897 + +1.1 221,898 - +0.3 221,898 - -0.2 221,898 - +0.6 221,898 - -0.0 221,898 - +0.4 221,898 - -0.4 221,898 - +0.2 222,202 + GFF553 0.20 -0.1 222,202 + GFF553 0.20 +0.3 222,202 + GFF553 0.20 -0.0 222,203 - GFF553 0.20 -1.5 222,203 - GFF553 0.20 +0.0 222,814 + GFF553 0.66 +0.7 222,814 + GFF553 0.66 -0.8 222,815 - GFF553 0.66 +0.2 222,997 + GFF553 0.80 +0.1 222,997 + GFF553 0.80 -1.1 222,997 + GFF553 0.80 -0.4 223,204 + -0.3 223,204 + -1.2 223,204 + +0.7 223,204 + +1.4 223,205 - -1.1 223,205 - -0.2 223,205 - +0.2 223,205 - +0.1 223,205 - +0.1 223,255 + -0.3 223,255 + +0.6 223,255 + +0.5 223,255 + -0.1 223,256 - +1.4 223,256 - -0.5 223,256 - -0.1 223,369 + -0.3 223,369 + -0.9 223,369 + -0.8 223,370 - -0.4 223,383 + -0.7 223,383 + -0.5 223,383 + +0.2 223,420 + -0.4 223,420 + +1.5 223,420 + +0.1 223,420 + -0.3 223,420 + -1.7 223,420 + -0.2 223,420 + -0.3 223,420 + +0.3 223,434 + +0.7 223,463 + -0.1 223,526 + -0.3 223,526 + +0.3 223,536 + +0.2 223,717 + GFF554 0.20 +0.7 223,717 + GFF554 0.20 +0.3 223,717 + GFF554 0.20 -0.3 223,941 + GFF554 0.81 +0.8 223,941 + GFF554 0.81 +0.3 223,941 + GFF554 0.81 +0.3 223,941 + GFF554 0.81 +0.0 224,096 + -0.2
Or see this region's nucleotide sequence