Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5146

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,155,234	-		GFF5144	0.82	-0.3
2,155,234	-		GFF5144	0.82	-1.0
2,155,234	-		GFF5144	0.82	-0.3
2,155,434	+				-0.6
2,155,434	+				+0.0
2,155,434	+				+0.2
2,155,435	-				+0.2
2,155,435	-				+0.3
2,155,435	-				+0.7
2,155,647	-		GFF5145	0.23	+0.6
2,155,688	+		GFF5145	0.29	+1.2
2,155,688	+		GFF5145	0.29	-0.3
2,155,688	+		GFF5145	0.29	-0.3
2,155,688	+		GFF5145	0.29	-0.1
2,155,706	+		GFF5145	0.31	+0.5
2,155,706	+		GFF5145	0.31	+0.6
2,155,706	+		GFF5145	0.31	+0.7
2,155,706	+		GFF5145	0.31	-0.2
2,155,775	+		GFF5145	0.41	+0.3
2,155,775	+		GFF5145	0.41	+0.5
2,155,775	+		GFF5145	0.41	-0.5
2,155,775	+		GFF5145	0.41	+0.4
2,155,775	+		GFF5145	0.41	+0.6
2,155,776	-		GFF5145	0.41	-0.2
2,155,776	-		GFF5145	0.41	-0.4
2,155,776	-		GFF5145	0.41	-0.3
2,156,000	+		GFF5145	0.73	+1.3
2,156,001	-		GFF5145	0.73	-1.3
2,156,045	+		GFF5145	0.79	-0.1
2,156,051	+		GFF5145	0.80	-0.6
2,156,051	+		GFF5145	0.80	+1.3
2,156,051	+		GFF5145	0.80	+0.1
2,156,051	+		GFF5145	0.80	+0.0
2,156,052	-		GFF5145	0.80	-0.7
2,156,052	-		GFF5145	0.80	-0.3
2,156,052	-		GFF5145	0.80	-0.8
2,156,052	-		GFF5145	0.80	+0.1
2,156,096	+		GFF5145	0.86	+1.3
2,156,296	+		GFF5146	0.20	-0.2
2,156,296	+		GFF5146	0.20	-1.2
2,156,296	+		GFF5146	0.20	+0.2
2,156,297	-		GFF5146	0.20	-3.3
2,156,297	-		GFF5146	0.20	-0.7
2,156,297	-		GFF5146	0.20	-0.7
2,156,314	+		GFF5146	0.24	-0.2
2,156,314	+		GFF5146	0.24	+0.2
2,156,314	+		GFF5146	0.24	-1.2
2,156,314	+		GFF5146	0.24	+1.3
2,156,449	+		GFF5146	0.50	-0.2
2,156,449	+		GFF5146	0.50	+0.3
2,156,449	+		GFF5146	0.50	-0.2
2,156,449	+		GFF5146	0.50	-0.1
2,156,449	+		GFF5146	0.50	-0.2
2,156,449	+		GFF5146	0.50	+2.0
2,156,450	-		GFF5146	0.50	-1.2
2,156,450	-		GFF5146	0.50	-1.6
2,156,450	-		GFF5146	0.50	-0.9
2,156,450	-		GFF5146	0.50	-2.1
2,156,450	-		GFF5146	0.50	-1.5
2,156,450	-		GFF5146	0.50	-3.1
2,156,450	-		GFF5146	0.50	-1.1
2,156,450	-		GFF5146	0.50	-0.7
2,156,567	-		GFF5146	0.74	-1.2
2,156,567	-		GFF5146	0.74	-1.3