Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5114

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5112 and GFF5113 are separated by 10 nucleotidesGFF5113 and GFF5114 are separated by 2 nucleotidesGFF5114 and GFF5115 overlap by 2 nucleotides GFF5112 - hypothetical protein, at 2,124,312 to 2,124,773 GFF5112 GFF5113 - Glutathione S-transferase (EC 2.5.1.18), at 2,124,784 to 2,125,434 GFF5113 GFF5114 - Hydrolase, at 2,125,437 to 2,126,174 GFF5114 GFF5115 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 2,126,173 to 2,127,264 GFF5115 Position (kb) 2125 2126 2127Strain fitness (log2 ratio) -1 0 1at 2124.667 kb on - strand, within GFF5112at 2125.209 kb on - strand, within GFF5113at 2126.147 kb on + strandat 2126.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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2,124,667 - GFF5112 0.77 +0.8
2,125,209 - GFF5113 0.65 +0.4
2,126,147 + +0.7
2,126,148 - -0.2

Or see this region's nucleotide sequence