Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5104

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,117,864	-		GFF5102	0.83	+0.6
2,117,912	-		GFF5102	0.90	-1.0
2,117,912	-		GFF5102	0.90	-0.3
2,117,971	-				+0.7
2,118,015	+				-0.9
2,118,036	+				-0.1
2,118,086	-		GFF5103	0.16	+1.1
2,118,318	+		GFF5103	0.47	+1.0
2,118,552	+		GFF5103	0.79	-0.1
2,118,552	+		GFF5103	0.79	-1.5
2,118,552	+		GFF5103	0.79	-0.9
2,118,553	-		GFF5103	0.79	+0.5
2,118,553	-		GFF5103	0.79	-0.3
2,118,553	-		GFF5103	0.79	+0.1
2,118,727	+				+0.4
2,118,728	-				+0.1
2,118,728	-				-0.1
2,118,729	-				+0.2
2,118,836	+				+0.4
2,118,836	+				-0.1
2,118,836	+				-0.4
2,118,836	+				+0.3
2,118,837	-				-0.0
2,118,837	-				+0.5
2,118,889	+		GFF5104	0.15	-0.1
2,118,965	+		GFF5104	0.38	-0.3
2,118,965	+		GFF5104	0.38	+0.1
2,118,965	+		GFF5104	0.38	+0.0
2,118,965	+		GFF5104	0.38	-0.3
2,118,965	+		GFF5104	0.38	+0.2
2,118,966	-		GFF5104	0.38	+0.2
2,118,966	-		GFF5104	0.38	-0.2
2,118,966	-		GFF5104	0.38	+0.1
2,118,966	-		GFF5104	0.38	-0.6
2,118,966	-		GFF5104	0.38	-0.0
2,118,966	-		GFF5104	0.38	-1.2
2,118,966	-		GFF5104	0.38	+0.0
2,118,966	-		GFF5104	0.38	-0.8
2,118,986	+		GFF5104	0.44	+0.1
2,119,106	+		GFF5104	0.80	-0.2
2,119,106	+		GFF5104	0.80	+0.4
2,119,503	+		GFF5105	0.73	+0.3
2,119,503	+		GFF5105	0.73	-0.1
2,119,504	-		GFF5105	0.73	-0.6
2,119,544	+		GFF5105	0.83	+0.6
2,119,544	+		GFF5105	0.83	+0.7
2,119,545	-		GFF5105	0.83	-1.0
2,119,715	+				+0.3
2,119,716	-				-0.2
2,119,716	-				+0.4
2,119,716	-				-0.1
2,120,035	+				-0.3
2,120,035	+				+0.3
2,120,036	-				-0.9
2,120,036	-				-0.3
2,120,070	-				-0.3