Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4934

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,949,326	-				-0.1
1,949,658	+				-1.1
1,949,658	+				-0.1
1,949,658	+				+0.4
1,949,782	-		GFF4934	0.10	-0.0
1,949,815	-		GFF4934	0.11	-1.2
1,950,171	+		GFF4934	0.21	-0.8
1,950,171	+		GFF4934	0.21	-0.3
1,950,172	-		GFF4934	0.21	-0.2
1,950,213	+		GFF4934	0.22	-0.3
1,950,217	-		GFF4934	0.23	-0.6
1,950,233	-		GFF4934	0.23	-0.9
1,950,417	+		GFF4934	0.28	-0.8
1,950,418	-		GFF4934	0.28	-0.2
1,950,444	+		GFF4934	0.29	-0.3
1,950,444	+		GFF4934	0.29	-0.8
1,950,444	+		GFF4934	0.29	-0.5
1,950,445	-		GFF4934	0.29	-0.5
1,950,445	-		GFF4934	0.29	+0.0
1,950,445	-		GFF4934	0.29	-0.2
1,950,993	+		GFF4934	0.45	-0.5
1,950,994	-		GFF4934	0.45	-0.0
1,951,015	-		GFF4934	0.46	-0.6
1,951,015	-		GFF4934	0.46	+0.6
1,951,015	-		GFF4934	0.46	+0.1
1,951,170	+		GFF4934	0.50	-0.6
1,951,170	+		GFF4934	0.50	-1.0
1,951,224	+		GFF4934	0.52	-0.6
1,951,225	-		GFF4934	0.52	-0.2
1,951,226	-		GFF4934	0.52	-0.8
1,951,893	+		GFF4934	0.71	+0.5
1,951,894	-		GFF4934	0.71	-0.2
1,951,894	-		GFF4934	0.71	-0.9
1,951,894	-		GFF4934	0.71	-1.1
1,952,286	+		GFF4934	0.82	-1.2
1,952,286	+		GFF4934	0.82	+0.8
1,952,286	+		GFF4934	0.82	+0.0
1,952,287	-		GFF4934	0.82	-1.0
1,952,379	+		GFF4934	0.85	-1.2
1,952,379	+		GFF4934	0.85	-0.6
1,952,379	+		GFF4934	0.85	-0.5
1,952,380	-		GFF4934	0.85	+0.4
1,952,503	-		GFF4934	0.88	-2.2
1,952,535	+		GFF4934	0.89	-1.3