Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4728

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,678,671	+		GFF4727	0.30	-0.4
1,678,671	+		GFF4727	0.30	-0.7
1,678,701	+		GFF4727	0.33	+0.6
1,678,702	-		GFF4727	0.33	+1.8
1,678,702	-		GFF4727	0.33	-0.2
1,678,702	-		GFF4727	0.33	-0.5
1,678,728	+		GFF4727	0.35	-0.4
1,678,729	-		GFF4727	0.35	+0.0
1,678,836	+		GFF4727	0.44	+0.5
1,678,836	+		GFF4727	0.44	+0.5
1,678,837	-		GFF4727	0.44	+0.3
1,678,848	+		GFF4727	0.45	-0.2
1,678,911	+		GFF4727	0.51	+0.7
1,678,974	+		GFF4727	0.56	+0.3
1,678,974	+		GFF4727	0.56	-0.8
1,679,232	+		GFF4727	0.78	-0.2
1,679,233	-		GFF4727	0.78	+0.0
1,679,233	-		GFF4727	0.78	+0.2
1,679,233	-		GFF4727	0.78	-0.1
1,679,256	+		GFF4727	0.80	+0.8
1,679,257	-		GFF4727	0.80	+0.8
1,679,257	-		GFF4727	0.80	+0.9
1,679,259	+		GFF4727	0.80	-1.0
1,679,260	-		GFF4727	0.80	+0.3
1,679,260	-		GFF4727	0.80	-0.0
1,679,292	+		GFF4727	0.83	-0.3
1,679,292	+		GFF4727	0.83	-0.1
1,679,293	-		GFF4727	0.83	+0.3
1,679,293	-		GFF4727	0.83	-0.8
1,679,293	-		GFF4727	0.83	-0.0
1,679,418	+				-0.3
1,679,418	+				-0.6
1,679,418	+				+0.5
1,679,418	+				+0.5
1,679,418	+				-0.0
1,679,418	+				-0.1
1,679,419	-				+0.1
1,679,419	-				-0.3
1,679,419	-				+0.4
1,679,419	-				-0.4
1,679,463	+				+0.8
1,679,463	+				+0.1
1,679,463	+				-0.0
1,679,463	+				-0.1
1,679,463	+				+0.3
1,679,464	-				-0.5
1,679,508	+				+0.4
1,679,509	-				+0.6
1,679,738	+		GFF4728	0.16	-0.4
1,679,738	+		GFF4728	0.16	-0.1
1,679,738	+		GFF4728	0.16	+0.0
1,679,738	+		GFF4728	0.16	+0.1
1,679,739	-		GFF4728	0.16	+0.0
1,679,739	-		GFF4728	0.16	-0.3
1,679,739	-		GFF4728	0.16	-0.6
1,679,997	-		GFF4728	0.46	-0.2
1,679,997	-		GFF4728	0.46	-0.7
1,680,242	+		GFF4728	0.75	+0.1
1,680,242	+		GFF4728	0.75	-0.2
1,680,461	-				-1.5
1,680,544	+				-0.2
1,680,544	+				-0.7
1,680,545	-				-0.2
1,680,545	-				+0.6
1,680,547	+				-0.0
1,680,547	+				-0.2
1,680,547	+				-0.1
1,680,547	+				+0.6
1,680,548	-				+0.0
1,680,548	-				-0.0
1,680,548	-				-1.2
1,680,556	+				+0.8
1,680,556	+				-1.2
1,680,556	+				+0.2
1,680,557	-				-0.2
1,680,596	-				-0.2
1,680,922	+		GFF4729	0.33	-0.2
1,680,923	-		GFF4729	0.33	+0.9
1,680,923	-		GFF4729	0.33	+0.1
1,680,996	+		GFF4729	0.38	-0.1
1,680,996	+		GFF4729	0.38	+0.7
1,680,997	-		GFF4729	0.39	-0.2
1,680,997	-		GFF4729	0.39	+0.2
1,680,997	-		GFF4729	0.39	-0.1
1,681,132	+		GFF4729	0.48	-1.1
1,681,132	+		GFF4729	0.48	+0.2
1,681,132	+		GFF4729	0.48	-1.2
1,681,337	-		GFF4729	0.63	+0.5
1,681,411	+		GFF4729	0.68	-0.3
1,681,411	+		GFF4729	0.68	+0.4
1,681,411	+		GFF4729	0.68	-1.0
1,681,411	+		GFF4729	0.68	-0.3