Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF463 and GFF464 are separated by 98 nucleotides GFF464 and GFF465 are separated by 2 nucleotides GFF465 and GFF466 overlap by 4 nucleotides GFF466 and GFF467 are separated by 8 nucleotides
GFF463 - Transcriptional regulator, GntR family, at 127,897 to 128,553
GFF463
GFF464 - Isochorismatase (EC 3.3.2.1), at 128,652 to 129,320
GFF464
GFF465 - ABC transporter ATP-binding protein, at 129,323 to 130,891
GFF465
GFF466 - Isochorismatase (EC 3.3.2.1), at 130,888 to 131,577
GFF466
GFF467 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 131,586 to 132,506
GFF467
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1 at 128.343 kb on - strand, within GFF463 at 128.550 kb on - strand at 128.761 kb on + strand, within GFF464 at 128.761 kb on + strand, within GFF464 at 128.761 kb on + strand, within GFF464 at 128.762 kb on - strand, within GFF464 at 128.914 kb on + strand, within GFF464 at 129.007 kb on - strand, within GFF464 at 129.290 kb on - strand at 129.290 kb on - strand at 130.230 kb on + strand, within GFF465 at 130.231 kb on - strand, within GFF465 at 130.231 kb on - strand, within GFF465 at 131.369 kb on + strand, within GFF466 at 131.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 128,343 - GFF463 0.68 -0.5 128,550 - -1.4 128,761 + GFF464 0.16 -0.5 128,761 + GFF464 0.16 -0.1 128,761 + GFF464 0.16 -0.0 128,762 - GFF464 0.16 +0.0 128,914 + GFF464 0.39 -0.2 129,007 - GFF464 0.53 +0.9 129,290 - +1.4 129,290 - +0.7 130,230 + GFF465 0.58 -0.5 130,231 - GFF465 0.58 -2.3 130,231 - GFF465 0.58 -0.1 131,369 + GFF466 0.70 +0.1 131,674 + +0.4
Or see this region's nucleotide sequence